Wall clock time and date at job start Tue Mar 31 2020 16:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 10 10 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 11 11 C 1.50707 * 109.46916 * 175.00063 * 10 7 6 12 12 O 1.21279 * 120.00095 * 0.02562 * 11 10 7 13 13 N 1.34774 * 119.99887 * 180.02562 * 11 10 7 14 14 C 1.46507 * 120.00106 * 359.97438 * 13 11 10 15 15 C 1.46499 * 120.00014 * 179.97438 * 13 11 10 16 16 C 1.53942 * 113.74226 * 218.73852 * 15 13 11 17 17 N 1.47817 * 86.03548 * 222.08513 * 16 15 13 18 18 C 1.36936 * 134.45404 * 204.64441 * 17 16 15 19 19 H 1.07996 * 119.99717 * 179.86830 * 18 17 16 20 20 C 1.38813 * 120.00127 * 359.86663 * 18 17 16 21 21 N 1.31621 * 119.99979 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00133 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46775 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47305 * 119.99625 * 22 20 18 25 25 H 1.48499 * 109.46885 * 240.00316 * 22 20 18 26 26 C 1.47573 * 91.04913 * 24.54962 * 17 16 15 27 27 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 28 28 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 29 29 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 36 36 H 1.09002 * 109.46914 * 299.99679 * 9 7 6 37 37 H 1.08996 * 109.47648 * 59.99983 * 9 7 6 38 38 H 1.09000 * 109.47142 * 180.02562 * 9 7 6 39 39 H 1.08992 * 109.47643 * 294.99744 * 10 7 6 40 40 H 1.08995 * 109.47103 * 55.00299 * 10 7 6 41 41 H 1.08996 * 109.47071 * 90.00084 * 14 13 11 42 42 H 1.08997 * 109.47158 * 210.00576 * 14 13 11 43 43 H 1.09000 * 109.46839 * 330.00625 * 14 13 11 44 44 H 1.09000 * 112.94104 * 350.33349 * 15 13 11 45 45 H 1.09007 * 113.76942 * 336.34750 * 16 15 13 46 46 H 1.09000 * 113.77280 * 107.74978 * 16 15 13 47 47 H 0.97003 * 119.99747 * 179.97438 * 21 20 18 48 48 H 1.09002 * 113.76905 * 221.15101 * 26 17 16 49 49 H 1.09003 * 113.77051 * 89.75723 * 26 17 16 50 50 H 1.08002 * 120.00166 * 179.97438 * 27 6 5 51 51 H 1.07996 * 120.00605 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 4.8036 5.5137 -0.7205 10 6 2.4474 6.3448 -0.7223 11 6 2.8872 7.7824 -0.6160 12 8 3.9065 8.0624 -0.0216 13 7 2.1475 8.7568 -1.1815 14 6 0.9164 8.4186 -1.9000 15 6 2.5746 10.1543 -1.0777 16 6 1.4141 11.1429 -0.8636 17 7 2.1085 12.0101 -1.8387 18 6 2.1230 13.3572 -2.0841 19 1 2.7362 13.7546 -2.8794 20 6 1.3495 14.2119 -1.3108 21 7 0.6018 13.7275 -0.3419 22 14 1.3687 16.0495 -1.6461 23 1 2.2834 16.3362 -2.7803 24 1 -0.0027 16.5046 -1.9884 25 1 1.8413 16.7686 -0.4358 26 6 2.7813 10.8420 -2.4394 27 6 2.7234 3.3758 1.1971 28 6 2.2627 2.0725 1.1971 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0926 1.5598 -2.1325 35 1 2.9045 3.8845 -2.1325 36 1 5.5218 4.8752 -0.2060 37 1 4.6835 5.1709 -1.7481 38 1 5.1665 6.5416 -0.7201 39 1 2.3934 6.0582 -1.7724 40 1 1.4654 6.2304 -0.2634 41 1 0.0753 8.4337 -1.2069 42 1 0.7468 9.1468 -2.6931 43 1 1.0111 7.4235 -2.3346 44 1 3.4043 10.2947 -0.3848 45 1 0.4508 10.7719 -1.2136 46 1 1.3710 11.5585 0.1431 47 1 0.0616 14.3249 0.1987 48 1 3.8278 11.0178 -2.6885 49 1 2.2204 10.3825 -3.2533 50 1 2.9031 3.8851 2.1324 51 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699719565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:27 Heat of formation + Delta-G solvation = 29.985119 kcal Electronic energy + Delta-G solvation = -27783.954280 eV Core-core repulsion = 24070.515855 eV Total energy + Delta-G solvation = -3713.438425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.27345 -39.53376 -37.77871 -35.80752 -34.43702 -33.21022 -31.98402 -31.11323 -29.14560 -28.21497 -27.28866 -26.50668 -24.82056 -24.57071 -23.17869 -23.00126 -21.80861 -20.40127 -19.36224 -18.39666 -17.30022 -16.79870 -16.25631 -16.00728 -15.53161 -15.46525 -15.18482 -14.79682 -14.25022 -14.17145 -13.88488 -13.80800 -13.61393 -13.41766 -13.27140 -13.03730 -12.90553 -12.46351 -12.32389 -12.09831 -12.02172 -11.73924 -11.66728 -11.59980 -11.44467 -11.29585 -11.19849 -11.15497 -10.89199 -10.85569 -10.72174 -10.69419 -10.23921 -10.03965 -9.57151 -9.34530 -9.09036 -8.82643 -8.66981 -8.11255 -6.92545 -5.80306 -3.13127 1.14782 1.23238 2.90301 3.29461 3.38552 3.43640 3.45844 3.57470 4.40965 4.45642 4.51842 4.57706 4.72949 4.83099 4.94368 5.00286 5.02366 5.03849 5.18896 5.20914 5.27613 5.30209 5.34324 5.43050 5.46469 5.50300 5.54708 5.57347 5.62423 5.67278 5.79803 5.81489 5.87478 5.88704 5.90709 5.97834 6.09994 6.11425 6.18320 6.24717 6.39724 6.41777 6.44138 6.54556 6.58100 6.80542 6.84123 7.18616 7.34006 7.50958 7.80005 7.93853 8.49944 9.00912 9.66997 10.54100 11.36997 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028671 B = 0.001978 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.356337 B =14151.893379 C =14468.912853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.075 4.075 7 C -0.036 4.036 8 H 0.086 0.914 9 C -0.148 4.148 10 C -0.131 4.131 11 C 0.510 3.490 12 O -0.544 6.544 13 N -0.601 5.601 14 C 0.077 3.923 15 C 0.090 3.910 16 C 0.157 3.843 17 N -0.607 5.607 18 C -0.222 4.222 19 H 0.082 0.918 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.108 3.892 27 C -0.113 4.113 28 C -0.117 4.117 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.115 0.885 45 H 0.031 0.969 46 H 0.076 0.924 47 H 0.254 0.746 48 H 0.046 0.954 49 H 0.035 0.965 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 -27.953 -0.565 27.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.075 4.075 7 C -0.055 4.055 8 H 0.104 0.896 9 C -0.205 4.205 10 C -0.171 4.171 11 C 0.298 3.702 12 O -0.422 6.422 13 N -0.333 5.333 14 C -0.066 4.066 15 C -0.013 4.013 16 C 0.031 3.969 17 N -0.333 5.333 18 C -0.349 4.349 19 H 0.100 0.900 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.019 4.019 27 C -0.131 4.131 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.133 0.867 45 H 0.049 0.951 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.029 -27.438 -0.213 27.458 hybrid contribution -0.372 1.018 -0.311 1.128 sum 0.657 -26.419 -0.524 26.433 Atomic orbital electron populations 1.21749 0.94744 1.01604 1.02323 1.20531 0.96185 0.92808 1.02646 1.19866 0.99682 0.96232 0.93285 1.20988 1.00185 0.94918 0.97393 1.20997 0.99533 0.94629 0.97757 1.19933 0.98597 0.95867 0.93151 1.19895 0.94718 0.89492 1.01373 0.89579 1.21956 0.95578 1.03869 0.99097 1.21779 1.00633 0.92119 1.02598 1.20590 0.83692 0.87326 0.78544 1.90640 1.24952 1.83775 1.42808 1.48065 1.24256 1.07490 1.53503 1.21778 0.86546 1.01035 0.97253 1.24003 1.00977 0.77144 0.99204 1.22659 0.91792 0.86009 0.96475 1.45719 1.50688 1.00529 1.36408 1.19043 1.22372 0.79592 1.13942 0.90002 1.24812 0.99080 0.98259 0.98295 1.69829 1.31246 1.33621 1.22055 0.86014 0.77268 0.84782 0.77504 1.20396 1.21717 1.21618 1.22964 0.96756 0.87933 0.94228 1.21096 0.99493 0.94758 0.97715 1.20991 1.00131 0.94912 0.97425 0.92529 0.92511 0.92514 0.91216 0.91203 0.86351 0.86111 0.92980 0.93283 0.89987 0.89080 0.89019 0.92495 0.90407 0.91663 0.86686 0.95081 0.90581 0.93604 0.93561 0.94761 0.86031 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.08 -0.53 6.07 -27.88 -0.17 -0.70 16 3 C -0.09 -0.75 5.13 -104.62 -0.54 -1.29 16 4 C -0.12 -0.98 9.70 -39.58 -0.38 -1.37 16 5 C -0.11 -1.01 8.76 -39.58 -0.35 -1.36 16 6 C -0.08 -0.75 4.78 -104.62 -0.50 -1.25 16 7 C -0.04 -0.40 2.21 -91.77 -0.20 -0.60 16 8 H 0.09 1.06 7.69 -51.93 -0.40 0.66 16 9 C -0.15 -1.69 8.75 37.16 0.33 -1.36 16 10 C -0.13 -1.45 3.47 -27.88 -0.10 -1.55 16 11 C 0.51 7.84 7.39 -10.98 -0.08 7.76 16 12 O -0.54 -10.14 13.44 5.56 0.07 -10.06 16 13 N -0.60 -9.59 3.09 -175.74 -0.54 -10.14 16 14 C 0.08 0.97 8.83 59.85 0.53 1.50 16 15 C 0.09 1.80 4.40 -70.15 -0.31 1.49 16 16 C 0.16 3.69 6.97 -2.84 -0.02 3.67 16 17 N -0.61 -15.67 3.70 -177.89 -0.66 -16.33 16 18 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 19 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -27.34 11.39 55.49 0.63 -26.70 16 22 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.11 2.26 8.46 -2.97 -0.03 2.24 16 27 C -0.11 -1.08 9.67 -39.58 -0.38 -1.46 16 28 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.12 0.96 7.16 -52.49 -0.38 0.58 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.49 7.39 -51.93 -0.38 0.11 16 38 H 0.08 1.14 5.95 -51.93 -0.31 0.84 16 39 H 0.09 0.85 6.83 -51.93 -0.35 0.49 16 40 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.06 6.35 -51.93 -0.33 0.73 16 43 H 0.06 0.61 6.44 -51.93 -0.33 0.28 16 44 H 0.12 2.52 7.22 -51.93 -0.37 2.14 16 45 H 0.03 0.72 6.83 -51.93 -0.35 0.36 16 46 H 0.08 2.02 7.17 -51.93 -0.37 1.65 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.03 0.67 6.84 -51.93 -0.36 0.32 16 50 H 0.12 1.05 7.95 -52.49 -0.42 0.63 16 51 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -32.49 402.09 -10.48 -42.97 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -8.55 Total: -0.06 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.47 Total: -2.90 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.57 Total: -53.17 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.49 -10.48 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699719565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.957 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds