Wall clock time and date at job start Tue Mar 31 2020 16:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 10 10 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 11 11 C 1.50707 * 109.46916 * 175.00063 * 10 7 6 12 12 O 1.21279 * 120.00095 * 0.02562 * 11 10 7 13 13 N 1.34774 * 119.99887 * 180.02562 * 11 10 7 14 14 C 1.46507 * 120.00106 * 359.97438 * 13 11 10 15 15 C 1.46499 * 120.00014 * 179.97438 * 13 11 10 16 16 C 1.53942 * 113.74226 * 218.73852 * 15 13 11 17 17 N 1.47817 * 86.03548 * 222.08513 * 16 15 13 18 18 C 1.36936 * 134.45404 * 204.64441 * 17 16 15 19 19 H 1.07996 * 119.99717 * 179.86830 * 18 17 16 20 20 C 1.38813 * 120.00127 * 359.86663 * 18 17 16 21 21 N 1.31621 * 119.99979 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00133 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46775 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47305 * 119.99625 * 22 20 18 25 25 H 1.48499 * 109.46885 * 240.00316 * 22 20 18 26 26 C 1.47573 * 91.04913 * 24.54962 * 17 16 15 27 27 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 28 28 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 29 29 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 36 36 H 1.09002 * 109.46914 * 299.99679 * 9 7 6 37 37 H 1.08996 * 109.47648 * 59.99983 * 9 7 6 38 38 H 1.09000 * 109.47142 * 180.02562 * 9 7 6 39 39 H 1.08992 * 109.47643 * 294.99744 * 10 7 6 40 40 H 1.08995 * 109.47103 * 55.00299 * 10 7 6 41 41 H 1.08996 * 109.47071 * 90.00084 * 14 13 11 42 42 H 1.08997 * 109.47158 * 210.00576 * 14 13 11 43 43 H 1.09000 * 109.46839 * 330.00625 * 14 13 11 44 44 H 1.09000 * 112.94104 * 350.33349 * 15 13 11 45 45 H 1.09007 * 113.76942 * 336.34750 * 16 15 13 46 46 H 1.09000 * 113.77280 * 107.74978 * 16 15 13 47 47 H 0.97003 * 119.99747 * 179.97438 * 21 20 18 48 48 H 1.09002 * 113.76905 * 221.15101 * 26 17 16 49 49 H 1.09003 * 113.77051 * 89.75723 * 26 17 16 50 50 H 1.08002 * 120.00166 * 179.97438 * 27 6 5 51 51 H 1.07996 * 120.00605 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 4.8036 5.5137 -0.7205 10 6 2.4474 6.3448 -0.7223 11 6 2.8872 7.7824 -0.6160 12 8 3.9065 8.0624 -0.0216 13 7 2.1475 8.7568 -1.1815 14 6 0.9164 8.4186 -1.9000 15 6 2.5746 10.1543 -1.0777 16 6 1.4141 11.1429 -0.8636 17 7 2.1085 12.0101 -1.8387 18 6 2.1230 13.3572 -2.0841 19 1 2.7362 13.7546 -2.8794 20 6 1.3495 14.2119 -1.3108 21 7 0.6018 13.7275 -0.3419 22 14 1.3687 16.0495 -1.6461 23 1 2.2834 16.3362 -2.7803 24 1 -0.0027 16.5046 -1.9884 25 1 1.8413 16.7686 -0.4358 26 6 2.7813 10.8420 -2.4394 27 6 2.7234 3.3758 1.1971 28 6 2.2627 2.0725 1.1971 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.0926 1.5598 -2.1325 35 1 2.9045 3.8845 -2.1325 36 1 5.5218 4.8752 -0.2060 37 1 4.6835 5.1709 -1.7481 38 1 5.1665 6.5416 -0.7201 39 1 2.3934 6.0582 -1.7724 40 1 1.4654 6.2304 -0.2634 41 1 0.0753 8.4337 -1.2069 42 1 0.7468 9.1468 -2.6931 43 1 1.0111 7.4235 -2.3346 44 1 3.4043 10.2947 -0.3848 45 1 0.4508 10.7719 -1.2136 46 1 1.3710 11.5585 0.1431 47 1 0.0616 14.3249 0.1987 48 1 3.8278 11.0178 -2.6885 49 1 2.2204 10.3825 -3.2533 50 1 2.9031 3.8851 2.1324 51 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699719565.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:26 Heat of formation + Delta-G solvation = 13.328464 kcal Electronic energy + Delta-G solvation = -27784.676566 eV Core-core repulsion = 24070.515855 eV Total energy + Delta-G solvation = -3714.160711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.41071 -40.46267 -39.31873 -36.63205 -35.88429 -34.09355 -33.78369 -31.74824 -30.20851 -29.40867 -28.55511 -27.79918 -26.63196 -25.40716 -24.71781 -23.63817 -22.68577 -21.44813 -20.59223 -19.75804 -18.87051 -18.31051 -17.44125 -16.98085 -16.73338 -16.66078 -16.30012 -15.92544 -15.68249 -15.19482 -14.84892 -14.82462 -14.53799 -14.35337 -14.10406 -13.93464 -13.86193 -13.78777 -13.54042 -13.38023 -13.19419 -13.14836 -12.93478 -12.81006 -12.61391 -12.57508 -12.30584 -12.23699 -12.06101 -12.01045 -11.91124 -11.76623 -11.57348 -11.53827 -11.43571 -10.90622 -10.62742 -9.73905 -9.50769 -9.33889 -8.97829 -7.94733 -5.29063 0.48346 0.58362 1.44546 1.46209 1.56499 1.68514 2.03074 2.47538 2.90212 3.24770 3.38606 3.55421 3.80366 3.83663 3.93930 4.06736 4.11903 4.15202 4.23145 4.28989 4.35658 4.40158 4.45455 4.56397 4.57275 4.64689 4.65935 4.70746 4.73089 4.75483 4.77366 4.84709 4.89513 4.97997 5.06707 5.11783 5.13504 5.18205 5.22148 5.23727 5.25008 5.32825 5.41733 5.44877 5.45079 5.63054 5.71780 5.80846 5.83141 5.87514 6.20080 6.53684 6.87141 7.25859 7.55400 8.49119 9.22593 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028671 B = 0.001978 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.356337 B =14151.893379 C =14468.912853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.122 4.122 5 C -0.114 4.114 6 C -0.085 4.085 7 C -0.030 4.030 8 H 0.065 0.935 9 C -0.143 4.143 10 C -0.119 4.119 11 C 0.507 3.493 12 O -0.582 6.582 13 N -0.603 5.603 14 C 0.072 3.928 15 C 0.115 3.885 16 C 0.161 3.839 17 N -0.638 5.638 18 C -0.234 4.234 19 H 0.086 0.914 20 C -0.067 4.067 21 N -0.954 5.954 22 Si 0.983 3.017 23 H -0.264 1.264 24 H -0.289 1.289 25 H -0.293 1.293 26 C 0.116 3.884 27 C -0.127 4.127 28 C -0.125 4.125 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.250 0.750 48 H 0.049 0.951 49 H 0.061 0.939 50 H 0.121 0.879 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 -30.258 -2.360 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.140 4.140 5 C -0.132 4.132 6 C -0.085 4.085 7 C -0.049 4.049 8 H 0.084 0.916 9 C -0.200 4.200 10 C -0.158 4.158 11 C 0.297 3.703 12 O -0.462 6.462 13 N -0.335 5.335 14 C -0.069 4.069 15 C 0.010 3.990 16 C 0.035 3.965 17 N -0.365 5.365 18 C -0.363 4.363 19 H 0.104 0.896 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.810 3.190 23 H -0.188 1.188 24 H -0.216 1.216 25 H -0.220 1.220 26 C -0.010 4.010 27 C -0.145 4.145 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.139 0.861 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.456 -29.791 -2.036 29.864 hybrid contribution -0.162 1.616 0.267 1.646 sum 0.293 -28.175 -1.770 28.232 Atomic orbital electron populations 1.21734 0.94415 1.02253 1.01856 1.20573 0.96373 0.91687 1.03452 1.20164 0.98932 0.97159 0.93129 1.21257 0.99691 0.94814 0.98240 1.21165 0.99256 0.95003 0.97796 1.19802 0.99757 0.95127 0.93819 1.19771 0.94602 0.90441 1.00131 0.91646 1.21884 0.95875 1.02029 1.00255 1.21791 1.01086 0.88402 1.04559 1.21386 0.82847 0.88779 0.77265 1.90637 1.26754 1.84551 1.44280 1.48052 1.25570 1.05673 1.54160 1.22021 0.85025 1.02999 0.96886 1.23222 0.98340 0.79439 0.98010 1.22518 0.93224 0.86708 0.94087 1.46046 1.51664 1.01002 1.37787 1.19434 1.21939 0.81200 1.13693 0.89582 1.25684 0.99240 1.02718 0.98393 1.70017 1.32254 1.34835 1.23138 0.84952 0.77291 0.79280 0.77438 1.18810 1.21622 1.21993 1.23062 0.96770 0.86140 0.95037 1.21229 1.00005 0.95393 0.97827 1.21193 1.00024 0.94683 0.98386 0.93163 0.92793 0.91352 0.90621 0.90242 0.84526 0.84735 0.92901 0.91566 0.92849 0.86175 0.87338 0.91890 0.91349 0.87451 0.89164 0.94428 0.94559 0.94139 0.93252 0.92158 0.86085 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 71.98 0.71 -0.65 16 2 C -0.08 -0.83 6.07 29.85 0.18 -0.65 16 3 C -0.09 -1.34 5.13 -19.87 -0.10 -1.44 16 4 C -0.12 -1.71 9.70 22.27 0.22 -1.49 16 5 C -0.11 -1.75 8.76 22.27 0.20 -1.55 16 6 C -0.08 -1.54 4.78 -19.87 -0.09 -1.64 16 7 C -0.03 -0.64 2.21 -11.54 -0.03 -0.67 16 8 H 0.07 1.63 7.69 -2.39 -0.02 1.61 16 9 C -0.14 -3.15 8.75 71.98 0.63 -2.52 16 10 C -0.12 -2.34 3.47 29.85 0.10 -2.24 16 11 C 0.51 15.11 7.39 87.66 0.65 15.76 16 12 O -0.58 -22.12 13.44 -3.03 -0.04 -22.16 16 13 N -0.60 -18.57 3.09 -828.33 -2.56 -21.14 16 14 C 0.07 1.63 8.83 127.77 1.13 2.76 16 15 C 0.12 4.66 4.40 46.75 0.21 4.86 16 16 C 0.16 7.77 6.97 86.44 0.60 8.37 16 17 N -0.64 -33.39 3.70 -716.71 -2.65 -36.04 16 18 C -0.23 -13.36 10.70 84.03 0.90 -12.46 16 19 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 20 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 21 N -0.95 -58.22 11.39 21.65 0.25 -57.98 16 22 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 C 0.12 4.78 8.46 86.49 0.73 5.51 16 27 C -0.13 -2.29 9.67 22.27 0.22 -2.07 16 28 C -0.12 -1.97 9.70 22.27 0.22 -1.75 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.67 8.09 -2.39 -0.02 0.65 16 33 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 34 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.13 1.62 7.16 -2.91 -0.02 1.60 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.19 7.39 -2.39 -0.02 1.18 16 38 H 0.05 1.50 5.95 -2.39 -0.01 1.48 16 39 H 0.12 1.71 6.83 -2.39 -0.02 1.70 16 40 H 0.11 1.85 8.11 -2.39 -0.02 1.83 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.70 6.35 -2.39 -0.02 1.68 16 43 H 0.11 1.52 6.44 -2.39 -0.02 1.51 16 44 H 0.09 4.12 7.22 -2.39 -0.02 4.10 16 45 H 0.04 1.76 6.83 -2.38 -0.02 1.74 16 46 H 0.04 2.02 7.17 -2.39 -0.02 2.00 16 47 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.06 2.22 6.84 -2.39 -0.02 2.20 16 50 H 0.12 2.08 7.95 -2.91 -0.02 2.06 16 51 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -72.53 402.09 4.84 -67.69 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.90 Total: 16.74 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 6.93 Total: 4.71 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -4.97 Total: -115.16 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.04 Total: -22.16 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.53 4.84 -67.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699719565.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.018 kcal (2) G-P(sol) polarization free energy of solvation -72.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds