Wall clock time and date at job start Tue Mar 31 2020 16:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47562 * 2 1 4 4 C 1.38234 * 120.00409 * 89.99172 * 3 2 1 5 5 C 1.38231 * 120.00223 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99819 * 359.95226 * 5 4 3 7 7 C 1.50702 * 119.99633 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47587 * 359.97438 * 7 6 5 9 9 C 1.53007 * 109.46728 * 240.00223 * 7 6 5 10 10 C 1.52993 * 109.47236 * 120.00530 * 7 6 5 11 11 C 1.50703 * 109.47498 * 184.99884 * 10 7 6 12 12 O 1.21287 * 119.99478 * 359.97438 * 11 10 7 13 13 N 1.34774 * 120.00261 * 179.97438 * 11 10 7 14 14 C 1.46496 * 119.99894 * 359.97438 * 13 11 10 15 15 C 1.46500 * 119.99905 * 179.97438 * 13 11 10 16 16 C 1.53495 * 114.20946 * 239.99851 * 15 13 11 17 17 N 1.47064 * 87.98647 * 220.14789 * 16 15 13 18 18 C 1.36929 * 136.05710 * 207.07951 * 17 16 15 19 19 H 1.08004 * 120.00104 * 6.50631 * 18 17 16 20 20 C 1.38818 * 120.00175 * 186.49548 * 18 17 16 21 21 N 1.31615 * 119.99847 * 6.43003 * 20 18 17 22 22 Si 1.86802 * 119.99925 * 186.42380 * 20 18 17 23 23 H 1.48502 * 109.46990 * 265.01960 * 22 20 18 24 24 H 1.48491 * 109.47236 * 25.02406 * 22 20 18 25 25 H 1.48506 * 109.46777 * 145.02360 * 22 20 18 26 26 C 1.47067 * 87.88549 * 27.33957 * 17 16 15 27 27 C 1.38228 * 120.00164 * 0.28110 * 6 5 4 28 28 C 1.38237 * 119.99898 * 359.51339 * 27 6 5 29 29 H 1.08997 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47787 * 300.00336 * 1 2 3 31 31 H 1.09007 * 109.47329 * 60.00459 * 1 2 3 32 32 H 1.08997 * 109.47674 * 239.99679 * 2 1 3 33 33 H 1.09007 * 109.47329 * 119.99540 * 2 1 3 34 34 H 1.08006 * 119.99675 * 359.97438 * 4 3 2 35 35 H 1.08006 * 119.99976 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.46480 * 299.99929 * 9 7 6 37 37 H 1.08999 * 109.47204 * 59.99710 * 9 7 6 38 38 H 1.08995 * 109.47010 * 180.02562 * 9 7 6 39 39 H 1.08998 * 109.47692 * 64.99313 * 10 7 6 40 40 H 1.09009 * 109.47132 * 304.99457 * 10 7 6 41 41 H 1.09001 * 109.46983 * 270.00218 * 14 13 11 42 42 H 1.08991 * 109.47247 * 30.00032 * 14 13 11 43 43 H 1.09001 * 109.46779 * 150.00246 * 14 13 11 44 44 H 1.09008 * 113.28018 * 13.06715 * 15 13 11 45 45 H 1.08996 * 113.46596 * 105.36686 * 16 15 13 46 46 H 1.09007 * 113.51449 * 334.93936 * 16 15 13 47 47 H 0.97003 * 120.00226 * 179.97438 * 21 20 18 48 48 H 1.09005 * 113.46771 * 87.43754 * 26 17 16 49 49 H 1.09002 * 113.46911 * 217.87594 * 26 17 16 50 50 H 1.07997 * 120.00187 * 179.72624 * 27 6 5 51 51 H 1.08003 * 120.00428 * 180.24978 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7230 3.3759 1.1970 6 6 2.9540 4.0273 -0.0002 7 6 3.4565 5.4481 -0.0002 8 1 3.5767 5.7910 1.0274 9 6 2.4490 6.3453 -0.7221 10 6 4.8045 5.5123 -0.7209 11 6 5.3651 6.9072 -0.6145 12 8 4.7469 7.7655 -0.0211 13 7 6.5533 7.2008 -1.1788 14 6 7.3002 6.1638 -1.8951 15 6 7.0980 8.5569 -1.0759 16 6 7.3303 9.2461 -2.4276 17 7 8.5837 9.7851 -1.8786 18 6 9.3652 10.8868 -2.1033 19 1 9.0274 11.6602 -2.7773 20 6 10.5916 11.0098 -1.4646 21 7 11.0609 10.0137 -0.7437 22 14 11.5758 12.5890 -1.6286 23 1 12.5625 12.4453 -2.7290 24 1 10.6571 13.7156 -1.9315 25 1 12.2902 12.8614 -0.3555 26 6 8.6317 8.6168 -0.9866 27 6 2.7192 3.3773 -1.1973 28 6 2.2628 2.0724 -1.1972 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0821 1.5636 2.1325 35 1 2.9026 3.8853 2.1324 36 1 2.3284 6.0024 -1.7498 37 1 1.4886 6.2995 -0.2087 38 1 2.8126 7.3728 -0.7225 39 1 4.6678 5.2548 -1.7711 40 1 5.4965 4.8067 -0.2609 41 1 7.9635 5.6484 -1.2004 42 1 6.6025 5.4482 -2.3298 43 1 7.8905 6.6234 -2.6879 44 1 6.5798 9.1747 -0.3424 45 1 6.5910 10.0137 -2.6562 46 1 7.4818 8.5483 -3.2512 47 1 11.9180 10.0995 -0.2977 48 1 9.1264 7.7524 -1.4297 49 1 9.0012 8.8483 0.0124 50 1 2.8954 3.8876 -2.1326 51 1 2.0831 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699719566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:30 Heat of formation + Delta-G solvation = 33.288897 kcal Electronic energy + Delta-G solvation = -27723.367833 eV Core-core repulsion = 24010.072671 eV Total energy + Delta-G solvation = -3713.295162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.29176 -39.56887 -37.92477 -35.82512 -34.48507 -33.21936 -32.04111 -31.11699 -29.16385 -28.23728 -27.30910 -26.55506 -24.63511 -24.57473 -23.25628 -23.00674 -21.82750 -20.42253 -19.41319 -18.45169 -17.31724 -16.76419 -16.25592 -16.02527 -15.57631 -15.46632 -15.18003 -14.78210 -14.26261 -14.08813 -13.94174 -13.82556 -13.69793 -13.48305 -13.38659 -12.90877 -12.80135 -12.48267 -12.35437 -12.21002 -12.00588 -11.82027 -11.66770 -11.58622 -11.47403 -11.27169 -11.20568 -11.16259 -10.96205 -10.84775 -10.76523 -10.70731 -10.19492 -10.11871 -9.46596 -9.37196 -9.09444 -8.82042 -8.67493 -8.08994 -6.94342 -5.83586 -3.14929 1.14321 1.22874 2.88792 3.26923 3.38147 3.43112 3.45308 3.56888 4.40387 4.45224 4.51355 4.56792 4.72215 4.82681 4.94271 4.98838 5.01723 5.03037 5.19032 5.25230 5.28868 5.30146 5.33750 5.39288 5.43970 5.50206 5.53801 5.56809 5.61470 5.66134 5.77688 5.79720 5.86718 5.88032 5.90008 5.97349 6.07889 6.10338 6.17520 6.24324 6.39532 6.41488 6.44363 6.54007 6.58004 6.79111 6.83640 7.11556 7.31088 7.45811 7.78137 7.90974 8.48514 8.98239 9.64607 10.57316 11.35255 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.035783 B = 0.001906 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.313422 B =14686.228491 C =14853.624647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.075 4.075 7 C -0.036 4.036 8 H 0.086 0.914 9 C -0.148 4.148 10 C -0.131 4.131 11 C 0.511 3.489 12 O -0.543 6.543 13 N -0.598 5.598 14 C 0.076 3.924 15 C 0.085 3.915 16 C 0.106 3.894 17 N -0.603 5.603 18 C -0.219 4.219 19 H 0.083 0.917 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.279 1.279 25 H -0.289 1.289 26 C 0.155 3.845 27 C -0.111 4.111 28 C -0.117 4.117 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.043 0.957 46 H 0.033 0.967 47 H 0.255 0.745 48 H 0.034 0.966 49 H 0.063 0.937 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.954 -21.057 0.330 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.076 4.076 7 C -0.055 4.055 8 H 0.104 0.896 9 C -0.205 4.205 10 C -0.171 4.171 11 C 0.299 3.701 12 O -0.421 6.421 13 N -0.330 5.330 14 C -0.067 4.067 15 C -0.019 4.019 16 C -0.022 4.022 17 N -0.329 5.329 18 C -0.347 4.347 19 H 0.101 0.899 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.204 1.204 25 H -0.215 1.215 26 C 0.029 3.971 27 C -0.129 4.129 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.136 0.864 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.065 0.935 48 H 0.052 0.948 49 H 0.082 0.918 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.961 -20.358 0.676 27.828 hybrid contribution 0.873 0.586 -0.264 1.085 sum -18.087 -19.772 0.412 26.800 Atomic orbital electron populations 1.21747 0.94812 1.01587 1.02242 1.20530 0.96116 0.92832 1.02715 1.19868 0.99691 0.96212 0.93285 1.20991 1.00150 0.94894 0.97426 1.21096 0.99561 0.94699 0.97705 1.19931 0.98782 0.95690 0.93154 1.19892 0.93432 0.90778 1.01369 0.89580 1.21958 0.98115 1.01338 0.99100 1.21778 0.97520 0.95172 1.02648 1.20581 0.80804 0.90182 0.78520 1.90643 1.58841 1.49821 1.42826 1.47932 1.19828 1.11645 1.53615 1.21797 0.96741 0.90815 0.97338 1.23751 0.97127 0.81293 0.99680 1.22812 0.89949 0.95100 0.94314 1.45346 1.24533 1.21640 1.41360 1.18924 0.97501 0.94204 1.24025 0.89887 1.24848 0.96870 0.98148 1.00445 1.69848 1.20068 1.30367 1.36199 0.86062 0.79896 0.82452 0.77123 1.21558 1.20407 1.21515 1.22398 0.88493 0.89630 0.96618 1.20994 0.99570 0.94582 0.97763 1.20992 1.00190 0.94898 0.97397 0.92506 0.92582 0.92567 0.91154 0.91175 0.86347 0.86036 0.93279 0.92976 0.89981 0.89041 0.88986 0.92435 0.91611 0.90342 0.86364 0.93917 0.94980 0.93534 0.94800 0.91834 0.86103 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.15 0.37 -0.46 16 2 C -0.08 -0.53 6.06 -27.89 -0.17 -0.69 16 3 C -0.09 -0.75 5.13 -104.62 -0.54 -1.28 16 4 C -0.12 -1.00 9.70 -39.59 -0.38 -1.39 16 5 C -0.11 -1.07 9.67 -39.58 -0.38 -1.45 16 6 C -0.08 -0.75 4.78 -104.62 -0.50 -1.25 16 7 C -0.04 -0.39 2.21 -91.77 -0.20 -0.60 16 8 H 0.09 1.05 7.69 -51.93 -0.40 0.65 16 9 C -0.15 -1.68 8.74 37.16 0.32 -1.36 16 10 C -0.13 -1.44 3.47 -27.89 -0.10 -1.54 16 11 C 0.51 7.79 7.39 -10.99 -0.08 7.71 16 12 O -0.54 -10.06 13.47 5.55 0.07 -9.98 16 13 N -0.60 -9.51 3.11 -173.56 -0.54 -10.05 16 14 C 0.08 0.96 8.92 59.84 0.53 1.49 16 15 C 0.09 1.70 4.57 -67.68 -0.31 1.39 16 16 C 0.11 2.23 8.24 -8.51 -0.07 2.16 16 17 N -0.60 -15.65 3.76 -184.62 -0.69 -16.34 16 18 C -0.22 -6.20 10.73 -15.06 -0.16 -6.36 16 19 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -27.28 11.81 55.49 0.66 -26.63 16 22 Si 0.91 22.13 29.56 -169.99 -5.02 17.11 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.16 3.64 6.65 -8.37 -0.06 3.58 16 27 C -0.11 -1.00 8.76 -39.59 -0.35 -1.35 16 28 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 34 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.12 1.04 7.95 -52.48 -0.42 0.62 16 36 H 0.05 0.49 7.37 -51.93 -0.38 0.11 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.14 5.95 -51.93 -0.31 0.83 16 39 H 0.09 0.85 6.85 -51.93 -0.36 0.49 16 40 H 0.09 0.92 8.11 -51.92 -0.42 0.50 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.61 6.44 -51.93 -0.33 0.28 16 43 H 0.08 1.08 6.18 -51.93 -0.32 0.76 16 44 H 0.12 2.56 7.29 -51.92 -0.38 2.18 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.03 0.64 6.97 -51.93 -0.36 0.28 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.03 0.78 6.57 -51.93 -0.34 0.44 16 49 H 0.06 1.66 7.57 -51.93 -0.39 1.27 16 50 H 0.12 0.96 7.16 -52.49 -0.38 0.58 16 51 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 402.56 15.07 6.07 6.07 Total: -1.00 -32.55 402.56 -10.57 -43.13 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.56 Total: -0.28 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.55 Total: -3.02 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.58 Total: -53.02 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.55 -10.57 -43.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699719566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.415 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds