Wall clock time and date at job start Tue Mar 31 2020 16:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47562 * 2 1 4 4 C 1.38234 * 120.00409 * 89.99172 * 3 2 1 5 5 C 1.38231 * 120.00223 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99819 * 359.95226 * 5 4 3 7 7 C 1.50702 * 119.99633 * 180.02562 * 6 5 4 8 8 H 1.08994 * 109.47587 * 359.97438 * 7 6 5 9 9 C 1.53007 * 109.46728 * 240.00223 * 7 6 5 10 10 C 1.52993 * 109.47236 * 120.00530 * 7 6 5 11 11 C 1.50703 * 109.47498 * 184.99884 * 10 7 6 12 12 O 1.21287 * 119.99478 * 359.97438 * 11 10 7 13 13 N 1.34774 * 120.00261 * 179.97438 * 11 10 7 14 14 C 1.46496 * 119.99894 * 359.97438 * 13 11 10 15 15 C 1.46500 * 119.99905 * 179.97438 * 13 11 10 16 16 C 1.53495 * 114.20946 * 239.99851 * 15 13 11 17 17 N 1.47064 * 87.98647 * 220.14789 * 16 15 13 18 18 C 1.36929 * 136.05710 * 207.07951 * 17 16 15 19 19 H 1.08004 * 120.00104 * 6.50631 * 18 17 16 20 20 C 1.38818 * 120.00175 * 186.49548 * 18 17 16 21 21 N 1.31615 * 119.99847 * 6.43003 * 20 18 17 22 22 Si 1.86802 * 119.99925 * 186.42380 * 20 18 17 23 23 H 1.48502 * 109.46990 * 265.01960 * 22 20 18 24 24 H 1.48491 * 109.47236 * 25.02406 * 22 20 18 25 25 H 1.48506 * 109.46777 * 145.02360 * 22 20 18 26 26 C 1.47067 * 87.88549 * 27.33957 * 17 16 15 27 27 C 1.38228 * 120.00164 * 0.28110 * 6 5 4 28 28 C 1.38237 * 119.99898 * 359.51339 * 27 6 5 29 29 H 1.08997 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47787 * 300.00336 * 1 2 3 31 31 H 1.09007 * 109.47329 * 60.00459 * 1 2 3 32 32 H 1.08997 * 109.47674 * 239.99679 * 2 1 3 33 33 H 1.09007 * 109.47329 * 119.99540 * 2 1 3 34 34 H 1.08006 * 119.99675 * 359.97438 * 4 3 2 35 35 H 1.08006 * 119.99976 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.46480 * 299.99929 * 9 7 6 37 37 H 1.08999 * 109.47204 * 59.99710 * 9 7 6 38 38 H 1.08995 * 109.47010 * 180.02562 * 9 7 6 39 39 H 1.08998 * 109.47692 * 64.99313 * 10 7 6 40 40 H 1.09009 * 109.47132 * 304.99457 * 10 7 6 41 41 H 1.09001 * 109.46983 * 270.00218 * 14 13 11 42 42 H 1.08991 * 109.47247 * 30.00032 * 14 13 11 43 43 H 1.09001 * 109.46779 * 150.00246 * 14 13 11 44 44 H 1.09008 * 113.28018 * 13.06715 * 15 13 11 45 45 H 1.08996 * 113.46596 * 105.36686 * 16 15 13 46 46 H 1.09007 * 113.51449 * 334.93936 * 16 15 13 47 47 H 0.97003 * 120.00226 * 179.97438 * 21 20 18 48 48 H 1.09005 * 113.46771 * 87.43754 * 26 17 16 49 49 H 1.09002 * 113.46911 * 217.87594 * 26 17 16 50 50 H 1.07997 * 120.00187 * 179.72624 * 27 6 5 51 51 H 1.08003 * 120.00428 * 180.24978 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7230 3.3759 1.1970 6 6 2.9540 4.0273 -0.0002 7 6 3.4565 5.4481 -0.0002 8 1 3.5767 5.7910 1.0274 9 6 2.4490 6.3453 -0.7221 10 6 4.8045 5.5123 -0.7209 11 6 5.3651 6.9072 -0.6145 12 8 4.7469 7.7655 -0.0211 13 7 6.5533 7.2008 -1.1788 14 6 7.3002 6.1638 -1.8951 15 6 7.0980 8.5569 -1.0759 16 6 7.3303 9.2461 -2.4276 17 7 8.5837 9.7851 -1.8786 18 6 9.3652 10.8868 -2.1033 19 1 9.0274 11.6602 -2.7773 20 6 10.5916 11.0098 -1.4646 21 7 11.0609 10.0137 -0.7437 22 14 11.5758 12.5890 -1.6286 23 1 12.5625 12.4453 -2.7290 24 1 10.6571 13.7156 -1.9315 25 1 12.2902 12.8614 -0.3555 26 6 8.6317 8.6168 -0.9866 27 6 2.7192 3.3773 -1.1973 28 6 2.2628 2.0724 -1.1972 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0821 1.5636 2.1325 35 1 2.9026 3.8853 2.1324 36 1 2.3284 6.0024 -1.7498 37 1 1.4886 6.2995 -0.2087 38 1 2.8126 7.3728 -0.7225 39 1 4.6678 5.2548 -1.7711 40 1 5.4965 4.8067 -0.2609 41 1 7.9635 5.6484 -1.2004 42 1 6.6025 5.4482 -2.3298 43 1 7.8905 6.6234 -2.6879 44 1 6.5798 9.1747 -0.3424 45 1 6.5910 10.0137 -2.6562 46 1 7.4818 8.5483 -3.2512 47 1 11.9180 10.0995 -0.2977 48 1 9.1264 7.7524 -1.4297 49 1 9.0012 8.8483 0.0124 50 1 2.8954 3.8876 -2.1326 51 1 2.0831 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699719566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:29 Heat of formation + Delta-G solvation = 16.499537 kcal Electronic energy + Delta-G solvation = -27724.095874 eV Core-core repulsion = 24010.072671 eV Total energy + Delta-G solvation = -3714.023203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.45260 -40.49834 -39.44342 -36.64004 -35.91564 -34.14054 -33.80459 -31.74698 -30.24022 -29.42589 -28.56637 -27.84049 -26.44074 -25.44653 -24.77082 -23.63834 -22.69791 -21.49255 -20.63556 -19.78666 -18.87060 -18.27394 -17.47998 -16.96158 -16.74192 -16.66977 -16.30913 -15.92977 -15.71481 -15.21218 -14.87472 -14.64981 -14.55622 -14.43914 -14.33398 -13.97910 -13.80051 -13.72474 -13.55790 -13.33306 -13.15043 -13.09873 -12.99626 -12.83854 -12.72524 -12.62711 -12.29828 -12.22784 -12.10992 -12.00272 -11.97182 -11.76853 -11.55136 -11.44356 -11.38125 -10.89251 -10.64242 -9.73808 -9.49773 -9.33834 -8.99975 -7.98341 -5.31179 0.48398 0.58503 1.44467 1.46914 1.56458 1.67672 2.00476 2.47195 2.90280 3.25524 3.43834 3.55496 3.75820 3.81168 3.93742 4.06947 4.11487 4.14993 4.23281 4.25805 4.34825 4.39798 4.45485 4.56147 4.57027 4.64783 4.66047 4.70308 4.72728 4.74706 4.77259 4.83762 4.89230 4.97329 5.06553 5.11392 5.12345 5.13217 5.21431 5.23364 5.23755 5.32854 5.39973 5.41116 5.44527 5.63134 5.70118 5.80945 5.83204 5.83958 6.20184 6.52700 6.84179 7.25043 7.52632 8.52194 9.20835 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.035783 B = 0.001906 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.313422 B =14686.228491 C =14853.624647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.125 4.125 5 C -0.126 4.126 6 C -0.085 4.085 7 C -0.030 4.030 8 H 0.066 0.934 9 C -0.144 4.144 10 C -0.119 4.119 11 C 0.508 3.492 12 O -0.581 6.581 13 N -0.600 5.600 14 C 0.072 3.928 15 C 0.112 3.888 16 C 0.113 3.887 17 N -0.636 5.636 18 C -0.234 4.234 19 H 0.087 0.913 20 C -0.064 4.064 21 N -0.952 5.952 22 Si 0.984 3.016 23 H -0.282 1.282 24 H -0.267 1.267 25 H -0.293 1.293 26 C 0.160 3.840 27 C -0.115 4.115 28 C -0.122 4.122 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.045 0.955 46 H 0.055 0.945 47 H 0.251 0.749 48 H 0.040 0.960 49 H 0.025 0.975 50 H 0.135 0.865 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.988 -23.118 -1.163 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.143 4.143 5 C -0.144 4.144 6 C -0.085 4.085 7 C -0.049 4.049 8 H 0.084 0.916 9 C -0.201 4.201 10 C -0.159 4.159 11 C 0.298 3.702 12 O -0.461 6.461 13 N -0.332 5.332 14 C -0.070 4.070 15 C 0.007 3.993 16 C -0.014 4.014 17 N -0.362 5.362 18 C -0.362 4.362 19 H 0.105 0.895 20 C -0.258 4.258 21 N -0.600 5.600 22 Si 0.811 3.189 23 H -0.209 1.209 24 H -0.192 1.192 25 H -0.219 1.219 26 C 0.034 3.966 27 C -0.132 4.132 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.043 0.957 50 H 0.152 0.848 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.028 -22.455 -0.841 30.101 hybrid contribution 1.095 1.150 0.217 1.603 sum -18.933 -21.305 -0.623 28.509 Atomic orbital electron populations 1.21733 0.94464 1.02257 1.01784 1.20572 0.96330 0.91712 1.03503 1.20165 0.98940 0.97147 0.93134 1.21195 1.00037 0.94680 0.98377 1.21232 1.00050 0.95311 0.97829 1.19802 0.99974 0.94921 0.93808 1.19769 0.93407 0.91589 1.00163 0.91567 1.21887 0.98161 0.99781 1.00237 1.21795 0.97444 0.92024 1.04589 1.21378 0.79985 0.91578 0.77231 1.90640 1.59772 1.51418 1.44271 1.47941 1.20409 1.10557 1.54286 1.22035 0.97604 0.90399 0.96966 1.22987 0.94468 0.83556 0.98313 1.22886 0.87892 0.95355 0.95257 1.45652 1.25780 1.21965 1.42803 1.19319 0.97913 0.95284 1.23672 0.89493 1.25721 0.98102 1.01409 1.00522 1.70020 1.20268 1.32324 1.37372 0.84991 0.78316 0.78822 0.76758 1.20904 1.19202 1.21949 1.22311 0.90938 0.89119 0.94269 1.21161 0.99339 0.94924 0.97810 1.21258 0.99717 0.94807 0.98239 0.91308 0.93174 0.92890 0.90216 0.90583 0.85137 0.86040 0.91614 0.92901 0.92828 0.86189 0.87237 0.91731 0.87400 0.91450 0.88647 0.93647 0.92711 0.94033 0.94254 0.95684 0.84763 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 71.98 0.71 -0.62 16 2 C -0.08 -0.83 6.06 29.85 0.18 -0.65 16 3 C -0.09 -1.33 5.13 -19.86 -0.10 -1.43 16 4 C -0.12 -1.95 9.70 22.27 0.22 -1.73 16 5 C -0.13 -2.25 9.67 22.27 0.22 -2.04 16 6 C -0.08 -1.53 4.78 -19.87 -0.09 -1.62 16 7 C -0.03 -0.63 2.21 -11.54 -0.03 -0.65 16 8 H 0.07 1.62 7.69 -2.39 -0.02 1.61 16 9 C -0.14 -3.14 8.74 71.98 0.63 -2.51 16 10 C -0.12 -2.32 3.47 29.85 0.10 -2.21 16 11 C 0.51 14.99 7.39 87.66 0.65 15.63 16 12 O -0.58 -21.83 13.47 -3.05 -0.04 -21.87 16 13 N -0.60 -18.41 3.11 -821.41 -2.56 -20.97 16 14 C 0.07 1.62 8.92 127.77 1.14 2.76 16 15 C 0.11 4.52 4.57 45.55 0.21 4.73 16 16 C 0.11 4.71 8.24 83.18 0.69 5.39 16 17 N -0.64 -33.52 3.76 -738.02 -2.78 -36.30 16 18 C -0.23 -13.39 10.73 84.04 0.90 -12.49 16 19 H 0.09 4.74 7.84 -2.91 -0.02 4.72 16 20 C -0.06 -3.69 5.50 84.86 0.47 -3.23 16 21 N -0.95 -57.98 11.81 21.65 0.26 -57.72 16 22 Si 0.98 46.02 29.56 68.60 2.03 48.05 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 C 0.16 7.71 6.65 83.27 0.55 8.27 16 27 C -0.11 -1.74 8.76 22.27 0.20 -1.55 16 28 C -0.12 -1.70 9.70 22.27 0.22 -1.49 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16 33 H 0.08 0.67 8.09 -2.38 -0.02 0.65 16 34 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.12 2.05 7.95 -2.91 -0.02 2.03 16 36 H 0.06 1.18 7.37 -2.39 -0.02 1.16 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.05 1.49 5.95 -2.39 -0.01 1.48 16 39 H 0.12 1.70 6.85 -2.39 -0.02 1.68 16 40 H 0.11 1.83 8.11 -2.38 -0.02 1.81 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.11 1.53 6.44 -2.39 -0.02 1.52 16 43 H 0.07 1.70 6.18 -2.39 -0.01 1.69 16 44 H 0.10 4.30 7.29 -2.38 -0.02 4.28 16 45 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.06 2.09 6.97 -2.38 -0.02 2.07 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 48 H 0.04 1.84 6.57 -2.38 -0.02 1.83 16 49 H 0.02 1.37 7.57 -2.39 -0.02 1.35 16 50 H 0.13 1.62 7.16 -2.91 -0.02 1.60 16 51 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -72.49 402.56 4.65 -67.84 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.90 Total: 16.42 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 6.85 Total: 4.55 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -5.08 Total: -114.99 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.04 Total: -21.87 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -72.49 4.65 -67.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699719566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.337 kcal (2) G-P(sol) polarization free energy of solvation -72.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds