Wall clock time and date at job start Tue Mar 31 2020 16:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47344 * 2 1 4 4 C 1.38258 * 119.99657 * 270.02531 * 3 2 1 5 5 C 1.38209 * 119.99974 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99995 * 359.80489 * 5 4 3 7 7 C 1.38214 * 119.99571 * 0.42083 * 6 5 4 8 8 C 1.50705 * 119.99498 * 179.81007 * 7 6 5 9 9 C 1.50701 * 109.47066 * 269.72594 * 8 7 6 10 10 O 1.21275 * 120.00046 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99864 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99998 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46028 * 60.02961 * 12 11 9 14 14 C 1.53045 * 109.45984 * 179.97438 * 12 11 9 15 15 C 1.53192 * 109.33739 * 58.64004 * 14 12 11 16 16 N 1.46998 * 108.74154 * 54.62332 * 15 14 12 17 17 C 1.36930 * 120.61644 * 126.38326 * 16 15 14 18 18 H 1.07998 * 120.00280 * 207.68527 * 17 16 15 19 19 C 1.38815 * 119.99720 * 27.69315 * 17 16 15 20 20 N 1.31614 * 120.00332 * 17.34405 * 19 17 16 21 21 Si 1.86808 * 119.99812 * 197.34769 * 19 17 16 22 22 H 1.48504 * 109.46698 * 59.99692 * 21 19 17 23 23 H 1.48500 * 109.47100 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46909 * 299.99973 * 21 19 17 25 25 C 1.46925 * 118.75135 * 306.40734 * 16 15 14 26 26 C 1.53043 * 109.45982 * 300.06576 * 12 11 9 27 27 C 1.38205 * 120.00278 * 89.99662 * 3 2 1 28 28 H 1.09006 * 109.47042 * 300.00354 * 1 2 3 29 29 H 1.08992 * 109.46856 * 60.00155 * 1 2 3 30 30 H 1.08995 * 109.46945 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47074 * 239.99407 * 2 1 3 32 32 H 1.09004 * 109.47042 * 119.99457 * 2 1 3 33 33 H 1.07998 * 120.00222 * 359.97438 * 4 3 2 34 34 H 1.08005 * 120.00208 * 180.02562 * 5 4 3 35 35 H 1.08002 * 120.00374 * 180.23797 * 6 5 4 36 36 H 1.09007 * 109.46805 * 149.72799 * 8 7 6 37 37 H 1.08999 * 109.47561 * 29.72951 * 8 7 6 38 38 H 0.96999 * 119.99944 * 0.02562 * 11 9 8 39 39 H 1.08997 * 109.47018 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.46672 * 299.97447 * 13 12 11 41 41 H 1.08997 * 109.47407 * 59.96860 * 13 12 11 42 42 H 1.09003 * 109.49403 * 178.60771 * 14 12 11 43 43 H 1.09000 * 109.49888 * 298.66959 * 14 12 11 44 44 H 1.09004 * 109.58473 * 174.44160 * 15 14 12 45 45 H 1.08995 * 109.58791 * 294.86074 * 15 14 12 46 46 H 0.97007 * 120.00009 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.58839 * 293.82233 * 25 16 15 48 48 H 1.09002 * 109.58770 * 173.39618 * 25 16 15 49 49 H 1.09007 * 109.49362 * 61.29718 * 26 12 11 50 50 H 1.08996 * 109.49819 * 181.35998 * 26 12 11 51 51 H 1.08004 * 119.99944 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0727 -1.1974 5 6 2.7226 3.3759 -1.1975 6 6 2.9492 4.0290 -0.0002 7 6 2.7238 3.3758 1.1968 8 6 2.9749 4.0863 2.5019 9 6 4.3980 3.8492 2.9372 10 8 5.1358 3.1704 2.2548 11 7 4.8508 4.3913 4.0850 12 6 6.2344 4.1613 4.5080 13 6 7.1898 4.7018 3.4422 14 6 6.4891 4.8829 5.8334 15 6 5.5080 4.3648 6.8897 16 7 5.6256 2.9015 6.9663 17 6 5.8596 2.2825 8.1650 18 1 6.3733 1.3328 8.1912 19 6 5.4365 2.8755 9.3466 20 7 4.5320 3.8312 9.3163 21 14 6.1510 2.3173 10.9799 22 1 7.6204 2.5321 10.9766 23 1 5.5389 3.1020 12.0821 24 1 5.8622 0.8743 11.1791 25 6 5.4878 2.1159 5.7324 26 6 6.4694 2.6598 4.6887 27 6 2.2627 2.0724 1.1969 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0823 1.5636 -2.1327 34 1 2.9018 3.8853 -2.1328 35 1 3.3052 5.0487 -0.0002 36 1 2.2938 3.7025 3.2615 37 1 2.8082 5.1556 2.3714 38 1 4.2606 4.9339 4.6311 39 1 8.2193 4.5311 3.7570 40 1 7.0087 4.1884 2.4979 41 1 7.0220 5.7709 3.3124 42 1 7.5110 4.6917 6.1611 43 1 6.3451 5.9547 5.6976 44 1 5.7491 4.8027 7.8584 45 1 4.4906 4.6353 6.6073 46 1 4.2361 4.2453 10.1421 47 1 4.4687 2.2030 5.3555 48 1 5.7155 1.0699 5.9378 49 1 6.3106 2.1498 3.7385 50 1 7.4915 2.4896 5.0267 51 1 2.0831 1.5632 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699771347.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:08 Heat of formation + Delta-G solvation = -22.250838 kcal Electronic energy + Delta-G solvation = -29064.223839 eV Core-core repulsion = 25348.520294 eV Total energy + Delta-G solvation = -3715.703546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.50250 -40.29348 -38.75062 -36.10329 -35.26904 -33.80993 -33.27599 -32.22075 -31.58288 -30.35500 -29.08697 -28.34575 -25.91860 -24.78375 -23.96866 -23.40196 -22.64733 -21.96842 -20.85224 -20.10996 -18.77349 -18.03112 -17.34473 -16.84700 -16.77963 -16.36927 -15.92447 -15.76412 -15.57025 -15.26313 -14.90079 -14.85790 -14.67722 -14.51800 -14.47073 -14.10226 -13.93899 -13.73689 -13.29229 -13.21749 -13.03808 -12.96806 -12.85935 -12.72001 -12.60390 -12.56870 -12.49700 -12.19971 -12.12103 -11.98425 -11.75772 -11.68104 -11.60792 -11.33535 -11.29231 -10.53394 -10.46020 -9.87223 -9.64119 -9.45134 -8.65572 -7.87545 -5.31039 0.47018 0.54716 1.47018 1.48748 1.55525 1.80430 2.35112 2.51521 2.95052 3.27050 3.69017 3.72512 3.82052 3.85631 4.01177 4.04152 4.15355 4.19935 4.26075 4.30803 4.41136 4.48482 4.51344 4.60309 4.63286 4.64346 4.71901 4.74790 4.80539 4.82829 4.89985 4.92224 4.98667 5.03846 5.08938 5.16436 5.21707 5.23707 5.25594 5.29331 5.37572 5.38340 5.49655 5.60931 5.63995 5.71039 5.73403 5.77048 5.80318 6.18103 6.39484 6.75530 7.16380 7.42806 7.86586 8.38477 9.18062 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015783 B = 0.002939 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.669642 B = 9525.825356 C =10541.683897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.069 4.069 8 C -0.101 4.101 9 C 0.516 3.484 10 O -0.565 6.565 11 N -0.710 5.710 12 C 0.189 3.811 13 C -0.149 4.149 14 C -0.132 4.132 15 C 0.179 3.821 16 N -0.606 5.606 17 C -0.267 4.267 18 H 0.058 0.942 19 C -0.043 4.043 20 N -0.928 5.928 21 Si 0.963 3.037 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.155 3.845 26 C -0.130 4.130 27 C -0.124 4.124 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.406 0.594 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.011 0.989 46 H 0.251 0.749 47 H 0.009 0.991 48 H 0.037 0.963 49 H 0.069 0.931 50 H 0.057 0.943 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 2.159 -20.089 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.146 4.146 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.069 4.069 8 C -0.140 4.140 9 C 0.304 3.696 10 O -0.444 6.444 11 N -0.362 5.362 12 C 0.103 3.897 13 C -0.207 4.207 14 C -0.171 4.171 15 C 0.054 3.946 16 N -0.330 5.330 17 C -0.397 4.397 18 H 0.075 0.925 19 C -0.239 4.239 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.029 3.971 26 C -0.170 4.170 27 C -0.143 4.143 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.149 0.851 36 H 0.126 0.874 37 H 0.145 0.855 38 H 0.242 0.758 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.029 0.971 46 H 0.060 0.940 47 H 0.027 0.973 48 H 0.056 0.944 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.021 1.751 -20.418 21.099 hybrid contribution 0.045 -0.165 1.648 1.657 sum -4.977 1.586 -18.770 19.483 Atomic orbital electron populations 1.21710 0.93820 1.02379 1.01969 1.20581 0.96900 0.91764 1.03077 1.20099 0.98957 0.96983 0.93065 1.21264 1.00252 0.95275 0.97859 1.21381 0.99004 0.95124 0.98481 1.21185 1.00202 1.00705 0.92061 1.19419 0.98781 0.94428 0.94303 1.20734 0.93254 1.03971 0.96085 1.20810 0.89892 0.78589 0.80320 1.90619 1.58943 1.39814 1.55050 1.46133 1.13434 1.53128 1.23477 1.20111 0.81540 0.94315 0.93759 1.22094 0.98687 1.01030 0.98893 1.22329 1.00983 0.99589 0.94194 1.20610 0.94261 0.82911 0.96840 1.44272 1.83844 1.02074 1.02787 1.19412 1.29949 1.05517 0.84865 0.92452 1.25668 0.97410 1.00031 1.00801 1.70135 1.30626 1.29655 1.26941 0.85418 0.78171 0.77619 0.79673 1.20603 1.21698 1.20575 1.20821 0.95449 0.94032 0.86751 1.22234 0.99503 0.96409 0.98867 1.21005 1.00690 0.94561 0.98008 0.93351 0.92147 0.91238 0.89968 0.91748 0.84354 0.83960 0.85131 0.87430 0.85499 0.75844 0.91678 0.92149 0.91632 0.91719 0.89944 0.92562 0.97140 0.93992 0.97315 0.94418 0.91296 0.92449 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.90 71.98 0.71 -1.46 16 2 C -0.09 -1.56 6.06 29.85 0.18 -1.38 16 3 C -0.09 -2.05 5.13 -19.87 -0.10 -2.15 16 4 C -0.13 -2.57 9.70 22.27 0.22 -2.36 16 5 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 6 C -0.12 -2.73 9.70 22.27 0.22 -2.52 16 7 C -0.07 -1.70 4.37 -19.87 -0.09 -1.79 16 8 C -0.10 -2.28 5.83 29.10 0.17 -2.11 16 9 C 0.52 15.19 7.24 87.66 0.63 15.83 16 10 O -0.56 -20.24 12.25 -3.01 -0.04 -20.28 16 11 N -0.71 -20.88 4.10 -422.80 -1.73 -22.61 16 12 C 0.19 6.13 0.66 3.63 0.00 6.13 16 13 C -0.15 -4.27 8.40 71.98 0.60 -3.66 16 14 C -0.13 -4.57 4.95 30.67 0.15 -4.42 16 15 C 0.18 8.05 5.04 86.35 0.44 8.48 16 16 N -0.61 -30.16 3.00 -698.81 -2.09 -32.25 16 17 C -0.27 -14.78 9.59 84.04 0.81 -13.97 16 18 H 0.06 3.17 7.89 -2.91 -0.02 3.15 16 19 C -0.04 -2.38 4.91 84.86 0.42 -1.96 16 20 N -0.93 -53.03 11.19 21.65 0.24 -52.78 16 21 Si 0.96 44.55 29.59 68.60 2.03 46.58 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 C 0.16 6.83 6.26 86.38 0.54 7.37 16 26 C -0.13 -4.92 4.67 30.69 0.14 -4.78 16 27 C -0.12 -3.19 9.36 22.26 0.21 -2.98 16 28 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 32 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.11 2.29 8.09 -2.38 -0.02 2.28 16 37 H 0.13 2.10 8.08 -2.39 -0.02 2.08 16 38 H 0.41 10.99 7.27 -92.71 -0.67 10.32 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.92 6.17 -2.39 -0.01 1.91 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.06 2.91 6.04 -2.38 -0.01 2.89 16 45 H 0.01 0.48 6.94 -2.39 -0.02 0.46 16 46 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 47 H 0.01 0.40 7.74 -2.38 -0.02 0.38 16 48 H 0.04 1.70 7.93 -2.39 -0.02 1.68 16 49 H 0.07 2.68 6.20 -2.38 -0.01 2.67 16 50 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.11 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -66.47 397.45 4.11 -62.36 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.23 Total: 28.90 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 5.47 Total: -9.91 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -3.58 Total: -107.65 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.04 Total: -20.28 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.47 4.11 -62.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699771347.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.110 kcal (2) G-P(sol) polarization free energy of solvation -66.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds