Wall clock time and date at job start Tue Mar 31 2020 16:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47154 * 2 1 4 4 C 1.53003 * 109.46727 * 119.99847 * 2 1 3 5 5 C 1.53005 * 109.47228 * 299.99938 * 4 2 1 6 6 C 1.50702 * 109.47082 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99815 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99728 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99532 * 179.97438 * 8 6 5 10 10 H 1.08999 * 112.91349 * 23.75050 * 9 8 6 11 11 C 1.53793 * 113.61160 * 155.00131 * 9 8 6 12 12 C 1.53781 * 87.07845 * 89.11793 * 11 9 8 13 13 H 1.09002 * 113.61228 * 139.98223 * 12 11 9 14 14 N 1.46500 * 113.61339 * 270.80169 * 12 11 9 15 15 C 1.36936 * 119.99618 * 203.47656 * 14 12 11 16 16 H 1.07990 * 120.00427 * 359.97438 * 15 14 12 17 17 C 1.38824 * 119.99622 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00063 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99662 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47190 * 60.00068 * 19 17 15 21 21 H 1.48504 * 109.46839 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47270 * 299.99942 * 19 17 15 23 23 C 1.53777 * 113.61724 * 252.49827 * 9 8 6 24 24 C 1.50697 * 109.47288 * 239.99618 * 2 1 3 25 25 C 1.38236 * 119.99932 * 239.72711 * 24 2 1 26 26 C 1.38244 * 119.99715 * 179.81094 * 25 24 2 27 27 C 1.38230 * 119.99835 * 0.39702 * 26 25 24 28 28 C 1.38237 * 120.00222 * 359.85774 * 27 26 25 29 29 C 1.38236 * 120.00178 * 359.95250 * 28 27 26 30 30 H 1.08993 * 109.46888 * 300.00316 * 1 2 3 31 31 H 1.09001 * 109.46526 * 60.00136 * 1 2 3 32 32 H 1.09000 * 109.46634 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46997 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46957 * 300.00061 * 3 2 1 35 35 H 1.09001 * 109.46920 * 59.99794 * 3 2 1 36 36 H 1.09000 * 109.46759 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.46908 * 60.00085 * 4 2 1 38 38 H 1.08998 * 109.46859 * 59.99951 * 5 4 2 39 39 H 1.08999 * 109.46820 * 300.00115 * 5 4 2 40 40 H 0.96998 * 119.99873 * 359.97438 * 8 6 5 41 41 H 1.09000 * 113.61258 * 334.56928 * 11 9 8 42 42 H 1.09001 * 113.68788 * 203.67855 * 11 9 8 43 43 H 0.96998 * 120.00149 * 23.46564 * 14 12 11 44 44 H 0.96996 * 120.00147 * 180.02562 * 18 17 15 45 45 H 1.08999 * 113.61947 * 156.34089 * 23 9 8 46 46 H 1.08997 * 113.61348 * 25.43304 * 23 9 8 47 47 H 1.07993 * 120.00239 * 0.02562 * 25 24 2 48 48 H 1.07992 * 119.99846 * 180.23367 * 26 25 24 49 49 H 1.08001 * 120.00401 * 179.83496 * 27 26 25 50 50 H 1.08003 * 120.00411 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00098 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 0.0001 2.4986 6 6 2.0327 -0.7100 3.7291 7 8 2.7307 -1.6956 3.6178 8 7 1.7076 -0.2491 4.9531 9 6 2.1959 -0.9397 6.1493 10 1 3.1004 -1.5194 5.9651 11 6 2.2861 -0.0347 7.3894 12 6 0.8312 -0.4327 7.6886 13 1 0.6339 -0.6031 8.7470 14 7 -0.1586 0.4452 7.0595 15 6 -1.4203 0.5405 7.5832 16 1 -1.6858 -0.0319 8.4596 17 6 -2.3581 1.3728 6.9874 18 7 -2.0343 2.0708 5.9195 19 14 -4.0793 1.5022 7.7014 20 1 -3.9994 1.9950 9.0999 21 1 -4.8825 2.4503 6.8882 22 1 -4.7243 0.1647 7.6839 23 6 1.1042 -1.7228 6.8973 24 6 2.0324 -0.7105 -1.2304 25 6 2.8318 -1.8311 -1.1034 26 6 3.2895 -2.4851 -2.2322 27 6 2.9544 -2.0136 -3.4876 28 6 2.1593 -0.8899 -3.6145 29 6 1.6985 -0.2382 -2.4859 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 -0.7217 1.2491 37 1 1.6766 -1.7489 1.2493 38 1 0.4400 0.0001 2.4985 39 1 1.8933 1.0277 2.4985 40 1 1.1503 0.5398 5.0420 41 1 2.4096 1.0217 7.1509 42 1 2.9974 -0.3858 8.1370 43 1 0.0798 0.9592 6.2721 44 1 -2.6894 2.6526 5.5035 45 1 1.4924 -2.5367 7.5097 46 1 0.2734 -2.0292 6.2617 47 1 3.0960 -2.1977 -0.1226 48 1 3.9109 -3.3627 -2.1330 49 1 3.3140 -2.5230 -4.3695 50 1 1.8979 -0.5213 -4.5955 51 1 1.0777 0.6399 -2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752776364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:03 Heat of formation + Delta-G solvation = 6.534942 kcal Electronic energy + Delta-G solvation = -28279.214630 eV Core-core repulsion = 24564.759330 eV Total energy + Delta-G solvation = -3714.455301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.23931 -39.63454 -38.02939 -36.62017 -33.63710 -32.61917 -31.51268 -30.92351 -29.93067 -29.28579 -27.32763 -25.58398 -25.12073 -24.33952 -23.02083 -22.48480 -21.78306 -20.06815 -19.02050 -18.66403 -17.57302 -17.20063 -16.47552 -15.58152 -15.42090 -15.14334 -15.04958 -14.77340 -14.39995 -14.21520 -14.05664 -13.66451 -13.64536 -13.43579 -13.21895 -13.04357 -12.78811 -12.44901 -12.32067 -12.04840 -11.99231 -11.76244 -11.56089 -11.47517 -11.41599 -11.19011 -10.91247 -10.84122 -10.64058 -10.56769 -10.44155 -10.27809 -10.15974 -9.88456 -9.59616 -9.41664 -9.00900 -8.95662 -8.77961 -8.50148 -7.09915 -5.90206 -3.18614 1.27017 1.30765 3.01062 3.38028 3.42914 3.43223 3.55692 3.69139 4.47302 4.49608 4.60058 4.88109 4.92899 4.93759 4.99991 5.06871 5.11811 5.24974 5.30691 5.31495 5.35641 5.42231 5.43149 5.49208 5.53325 5.63485 5.72137 5.78630 5.84601 5.86648 5.89029 5.95176 5.96748 6.02745 6.04928 6.13562 6.14514 6.26625 6.31063 6.32059 6.34477 6.41240 6.44643 6.58340 6.60022 6.71087 6.84930 6.91620 7.15759 7.62399 7.97246 8.29664 8.63808 9.39998 9.94516 10.28065 11.32597 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013854 B = 0.002679 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.644050 B =10447.490789 C =11891.539297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 C -0.142 4.142 4 C -0.090 4.090 5 C -0.147 4.147 6 C 0.516 3.484 7 O -0.557 6.557 8 N -0.702 5.702 9 C 0.124 3.876 10 H 0.089 0.911 11 C -0.168 4.168 12 C 0.164 3.836 13 H 0.065 0.935 14 N -0.704 5.704 15 C -0.243 4.243 16 H 0.073 0.927 17 C -0.011 4.011 18 N -0.934 5.934 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.187 4.187 24 C -0.063 4.063 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.130 4.130 28 C -0.122 4.122 29 C -0.116 4.116 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.408 0.592 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.379 0.621 44 H 0.257 0.743 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.130 0.870 48 H 0.119 0.881 49 H 0.117 0.883 50 H 0.118 0.882 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.274 -3.729 -14.842 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 C -0.199 4.199 4 C -0.128 4.128 5 C -0.186 4.186 6 C 0.303 3.697 7 O -0.436 6.436 8 N -0.355 5.355 9 C 0.018 3.982 10 H 0.107 0.893 11 C -0.207 4.207 12 C 0.052 3.948 13 H 0.083 0.917 14 N -0.344 5.344 15 C -0.374 4.374 16 H 0.091 0.909 17 C -0.207 4.207 18 N -0.582 5.582 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.229 4.229 24 C -0.063 4.063 25 C -0.138 4.138 26 C -0.138 4.138 27 C -0.148 4.148 28 C -0.140 4.140 29 C -0.134 4.134 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.246 0.754 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.214 0.786 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.148 0.852 48 H 0.137 0.863 49 H 0.135 0.865 50 H 0.136 0.864 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.569 -4.379 -14.823 18.724 hybrid contribution -1.222 0.576 0.078 1.353 sum 9.347 -3.803 -14.745 17.867 Atomic orbital electron populations 1.21981 0.93374 1.02336 1.02390 1.19552 0.95960 0.95168 0.91984 1.21969 1.01174 0.94507 1.02285 1.21443 1.01122 0.99230 0.91032 1.21829 1.03472 1.00824 0.92506 1.20671 0.79759 0.84424 0.84883 1.90633 1.39002 1.26874 1.87127 1.45919 1.52726 1.31922 1.04888 1.21733 0.97465 0.94899 0.84108 0.89262 1.23847 0.99922 0.99914 0.97045 1.21204 0.87788 0.89953 0.95862 0.91724 1.42197 1.09247 1.49892 1.33114 1.19242 0.87861 1.21197 1.09055 0.90912 1.24735 0.98532 0.99455 0.97970 1.69601 1.34785 1.31540 1.22313 0.86225 0.84165 0.77364 0.78171 1.21198 1.21648 1.21225 1.24275 0.98936 0.99309 1.00395 1.19869 0.96797 0.95361 0.94301 1.21335 0.97646 0.95512 0.99271 1.21168 1.00080 0.99867 0.92639 1.21112 0.99233 0.97119 0.97357 1.21102 0.98399 0.96156 0.98364 1.20992 1.00353 1.00093 0.91982 0.91283 0.92585 0.92417 0.92517 0.92548 0.91501 0.91029 0.90927 0.88135 0.88711 0.75381 0.91146 0.89250 0.78595 0.93302 0.90584 0.91151 0.85186 0.86277 0.86504 0.86400 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 7.93 37.16 0.29 -1.25 16 2 C -0.03 -0.28 0.63 -155.65 -0.10 -0.38 16 3 C -0.14 -1.39 7.93 37.16 0.29 -1.10 16 4 C -0.09 -1.11 2.22 -26.73 -0.06 -1.17 16 5 C -0.15 -1.95 4.99 -27.88 -0.14 -2.08 16 6 C 0.52 8.60 7.83 -10.98 -0.09 8.52 16 7 O -0.56 -10.71 15.58 5.56 0.09 -10.63 16 8 N -0.70 -11.96 5.13 -53.02 -0.27 -12.23 16 9 C 0.12 2.07 4.32 -67.12 -0.29 1.78 16 10 H 0.09 1.50 7.47 -51.93 -0.39 1.11 16 11 C -0.17 -2.66 7.58 -25.91 -0.20 -2.86 16 12 C 0.16 3.13 4.55 -67.12 -0.31 2.83 16 13 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 14 N -0.70 -16.46 5.17 -52.63 -0.27 -16.74 16 15 C -0.24 -6.41 9.97 -15.06 -0.15 -6.56 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -26.19 13.06 55.49 0.72 -25.47 16 19 Si 0.91 21.58 29.55 -169.99 -5.02 16.55 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.19 -3.32 7.68 -25.92 -0.20 -3.52 16 24 C -0.06 -0.69 4.76 -104.62 -0.50 -1.19 16 25 C -0.12 -1.34 8.98 -39.58 -0.36 -1.69 16 26 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 27 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 28 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 29 C -0.12 -1.16 8.71 -39.58 -0.34 -1.51 16 30 H 0.07 0.77 6.43 -51.93 -0.33 0.43 16 31 H 0.06 0.54 7.39 -51.93 -0.38 0.15 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 35 H 0.07 0.65 6.43 -51.93 -0.33 0.31 16 36 H 0.07 0.91 7.46 -51.93 -0.39 0.52 16 37 H 0.07 0.97 7.48 -51.93 -0.39 0.59 16 38 H 0.10 1.35 6.43 -51.93 -0.33 1.02 16 39 H 0.09 1.11 6.43 -51.93 -0.33 0.78 16 40 H 0.41 7.25 6.15 -40.82 -0.25 7.00 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.38 9.00 5.37 -40.82 -0.22 8.78 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.13 1.47 5.89 -52.49 -0.31 1.16 16 48 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 50 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 51 H 0.12 1.04 7.10 -52.49 -0.37 0.67 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -29.98 398.25 -10.37 -40.35 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -8.19 Total: 17.47 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -3.42 Total: -15.31 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.18 Total: -54.44 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.98 -10.37 -40.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752776364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.884 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds