Wall clock time and date at job start Tue Mar 31 2020 16:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47154 * 2 1 4 4 C 1.53003 * 109.46727 * 119.99847 * 2 1 3 5 5 C 1.53005 * 109.47228 * 299.99938 * 4 2 1 6 6 C 1.50702 * 109.47082 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99815 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99728 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99532 * 179.97438 * 8 6 5 10 10 H 1.08999 * 112.91349 * 23.75050 * 9 8 6 11 11 C 1.53793 * 113.61160 * 155.00131 * 9 8 6 12 12 C 1.53781 * 87.07845 * 89.11793 * 11 9 8 13 13 H 1.09002 * 113.61228 * 139.98223 * 12 11 9 14 14 N 1.46500 * 113.61339 * 270.80169 * 12 11 9 15 15 C 1.36936 * 119.99618 * 203.47656 * 14 12 11 16 16 H 1.07990 * 120.00427 * 359.97438 * 15 14 12 17 17 C 1.38824 * 119.99622 * 179.97438 * 15 14 12 18 18 N 1.31617 * 120.00063 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99662 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47190 * 60.00068 * 19 17 15 21 21 H 1.48504 * 109.46839 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47270 * 299.99942 * 19 17 15 23 23 C 1.53777 * 113.61724 * 252.49827 * 9 8 6 24 24 C 1.50697 * 109.47288 * 239.99618 * 2 1 3 25 25 C 1.38236 * 119.99932 * 239.72711 * 24 2 1 26 26 C 1.38244 * 119.99715 * 179.81094 * 25 24 2 27 27 C 1.38230 * 119.99835 * 0.39702 * 26 25 24 28 28 C 1.38237 * 120.00222 * 359.85774 * 27 26 25 29 29 C 1.38236 * 120.00178 * 359.95250 * 28 27 26 30 30 H 1.08993 * 109.46888 * 300.00316 * 1 2 3 31 31 H 1.09001 * 109.46526 * 60.00136 * 1 2 3 32 32 H 1.09000 * 109.46634 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46997 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46957 * 300.00061 * 3 2 1 35 35 H 1.09001 * 109.46920 * 59.99794 * 3 2 1 36 36 H 1.09000 * 109.46759 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.46908 * 60.00085 * 4 2 1 38 38 H 1.08998 * 109.46859 * 59.99951 * 5 4 2 39 39 H 1.08999 * 109.46820 * 300.00115 * 5 4 2 40 40 H 0.96998 * 119.99873 * 359.97438 * 8 6 5 41 41 H 1.09000 * 113.61258 * 334.56928 * 11 9 8 42 42 H 1.09001 * 113.68788 * 203.67855 * 11 9 8 43 43 H 0.96998 * 120.00149 * 23.46564 * 14 12 11 44 44 H 0.96996 * 120.00147 * 180.02562 * 18 17 15 45 45 H 1.08999 * 113.61947 * 156.34089 * 23 9 8 46 46 H 1.08997 * 113.61348 * 25.43304 * 23 9 8 47 47 H 1.07993 * 120.00239 * 0.02562 * 25 24 2 48 48 H 1.07992 * 119.99846 * 180.23367 * 26 25 24 49 49 H 1.08001 * 120.00401 * 179.83496 * 27 26 25 50 50 H 1.08003 * 120.00411 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00098 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5300 0.0001 2.4986 6 6 2.0327 -0.7100 3.7291 7 8 2.7307 -1.6956 3.6178 8 7 1.7076 -0.2491 4.9531 9 6 2.1959 -0.9397 6.1493 10 1 3.1004 -1.5194 5.9651 11 6 2.2861 -0.0347 7.3894 12 6 0.8312 -0.4327 7.6886 13 1 0.6339 -0.6031 8.7470 14 7 -0.1586 0.4452 7.0595 15 6 -1.4203 0.5405 7.5832 16 1 -1.6858 -0.0319 8.4596 17 6 -2.3581 1.3728 6.9874 18 7 -2.0343 2.0708 5.9195 19 14 -4.0793 1.5022 7.7014 20 1 -3.9994 1.9950 9.0999 21 1 -4.8825 2.4503 6.8882 22 1 -4.7243 0.1647 7.6839 23 6 1.1042 -1.7228 6.8973 24 6 2.0324 -0.7105 -1.2304 25 6 2.8318 -1.8311 -1.1034 26 6 3.2895 -2.4851 -2.2322 27 6 2.9544 -2.0136 -3.4876 28 6 2.1593 -0.8899 -3.6145 29 6 1.6985 -0.2382 -2.4859 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 -0.7217 1.2491 37 1 1.6766 -1.7489 1.2493 38 1 0.4400 0.0001 2.4985 39 1 1.8933 1.0277 2.4985 40 1 1.1503 0.5398 5.0420 41 1 2.4096 1.0217 7.1509 42 1 2.9974 -0.3858 8.1370 43 1 0.0798 0.9592 6.2721 44 1 -2.6894 2.6526 5.5035 45 1 1.4924 -2.5367 7.5097 46 1 0.2734 -2.0292 6.2617 47 1 3.0960 -2.1977 -0.1226 48 1 3.9109 -3.3627 -2.1330 49 1 3.3140 -2.5230 -4.3695 50 1 1.8979 -0.5213 -4.5955 51 1 1.0777 0.6399 -2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752776364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:02 Heat of formation + Delta-G solvation = -8.652729 kcal Electronic energy + Delta-G solvation = -28279.873217 eV Core-core repulsion = 24564.759330 eV Total energy + Delta-G solvation = -3715.113887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37801 -40.71407 -39.38492 -37.54881 -35.46301 -34.10726 -32.51552 -31.86017 -31.60330 -30.16656 -28.15648 -26.78715 -26.52487 -26.00525 -24.26979 -23.42234 -22.78130 -21.38476 -20.39970 -19.66293 -19.25462 -18.40312 -17.58296 -16.92145 -16.65611 -16.57006 -16.07230 -15.93678 -15.69932 -15.50863 -15.14622 -14.90526 -14.83919 -14.52116 -14.31280 -14.25459 -13.98795 -13.51686 -13.38734 -13.23358 -13.18759 -13.16971 -12.76847 -12.67408 -12.57146 -12.37664 -12.22841 -12.19284 -12.10020 -11.76763 -11.69495 -11.65162 -11.40510 -11.30958 -11.13818 -10.83955 -10.76644 -9.91072 -9.77014 -9.54625 -9.00182 -7.94828 -5.22000 0.51118 0.54519 1.49873 1.50820 1.56657 1.65838 2.25341 2.57161 2.93000 3.37722 3.58608 3.60858 3.70216 3.88134 3.94773 3.98770 4.03852 4.19078 4.21005 4.30099 4.32471 4.36095 4.37964 4.39092 4.44216 4.61649 4.68368 4.75584 4.82833 4.87258 4.88685 4.94203 4.98293 5.00863 5.04976 5.07641 5.08655 5.20284 5.21439 5.23495 5.26425 5.36960 5.39868 5.45888 5.53978 5.66137 5.67628 5.76061 5.80386 6.17719 6.29127 6.59115 7.26471 7.35802 8.08347 8.32094 9.27749 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013854 B = 0.002679 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.644050 B =10447.490789 C =11891.539297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.019 4.019 3 C -0.141 4.141 4 C -0.080 4.080 5 C -0.140 4.140 6 C 0.511 3.489 7 O -0.585 6.585 8 N -0.704 5.704 9 C 0.121 3.879 10 H 0.094 0.906 11 C -0.144 4.144 12 C 0.147 3.853 13 H 0.067 0.933 14 N -0.715 5.715 15 C -0.246 4.246 16 H 0.074 0.926 17 C -0.066 4.066 18 N -0.960 5.960 19 Si 0.968 3.032 20 H -0.280 1.280 21 H -0.295 1.295 22 H -0.284 1.284 23 C -0.179 4.179 24 C -0.076 4.076 25 C -0.140 4.140 26 C -0.129 4.129 27 C -0.134 4.134 28 C -0.125 4.125 29 C -0.124 4.124 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.404 0.596 41 H 0.066 0.934 42 H 0.125 0.875 43 H 0.374 0.626 44 H 0.253 0.747 45 H 0.103 0.897 46 H 0.038 0.962 47 H 0.119 0.881 48 H 0.132 0.868 49 H 0.140 0.860 50 H 0.142 0.858 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.787 -3.551 -15.370 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 C -0.198 4.198 4 C -0.118 4.118 5 C -0.179 4.179 6 C 0.300 3.700 7 O -0.466 6.466 8 N -0.356 5.356 9 C 0.015 3.985 10 H 0.112 0.888 11 C -0.184 4.184 12 C 0.036 3.964 13 H 0.086 0.914 14 N -0.356 5.356 15 C -0.378 4.378 16 H 0.092 0.908 17 C -0.259 4.259 18 N -0.610 5.610 19 Si 0.797 3.203 20 H -0.206 1.206 21 H -0.221 1.221 22 H -0.211 1.211 23 C -0.221 4.221 24 C -0.076 4.076 25 C -0.158 4.158 26 C -0.147 4.147 27 C -0.152 4.152 28 C -0.143 4.143 29 C -0.142 4.142 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.242 0.758 41 H 0.085 0.915 42 H 0.143 0.857 43 H 0.209 0.791 44 H 0.062 0.938 45 H 0.122 0.878 46 H 0.057 0.943 47 H 0.137 0.863 48 H 0.150 0.850 49 H 0.158 0.842 50 H 0.159 0.841 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.106 -4.225 -15.323 19.390 hybrid contribution -1.328 0.431 0.261 1.420 sum 9.778 -3.794 -15.062 18.354 Atomic orbital electron populations 1.21970 0.93426 1.01796 1.02770 1.19462 0.95786 0.95563 0.91118 1.21962 1.01104 0.93783 1.02938 1.21333 1.00563 0.98410 0.91523 1.21846 1.03205 1.01511 0.91341 1.21224 0.79140 0.84095 0.85566 1.90613 1.40337 1.28114 1.87506 1.46015 1.52520 1.31724 1.05323 1.21807 0.97110 0.95106 0.84437 0.88822 1.23745 0.97991 0.99622 0.97000 1.21469 0.88896 0.90225 0.95768 0.91450 1.42315 1.09282 1.50698 1.33270 1.19568 0.89167 1.20332 1.08728 0.90810 1.25424 1.01722 1.00019 0.98772 1.69723 1.35432 1.32396 1.23448 0.85308 0.80414 0.77017 0.77544 1.20589 1.22127 1.21053 1.24207 0.98271 0.99493 1.00086 1.19930 0.97281 0.95572 0.94780 1.21385 0.98741 0.96309 0.99352 1.21400 1.00252 1.00315 0.92764 1.21433 0.98819 0.97165 0.97764 1.21444 0.97741 0.95879 0.99232 1.21196 1.00552 1.00646 0.91759 0.91860 0.91192 0.93424 0.92637 0.91292 0.91447 0.91692 0.92660 0.88310 0.86857 0.75793 0.91510 0.85734 0.79122 0.93850 0.87835 0.94315 0.86302 0.85030 0.84232 0.84053 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 7.93 71.98 0.57 -2.45 16 2 C -0.02 -0.41 0.63 -52.92 -0.03 -0.44 16 3 C -0.14 -2.62 7.93 71.98 0.57 -2.05 16 4 C -0.08 -2.03 2.22 30.60 0.07 -1.96 16 5 C -0.14 -3.76 4.99 29.85 0.15 -3.61 16 6 C 0.51 17.29 7.83 87.66 0.69 17.98 16 7 O -0.58 -22.82 15.58 -3.02 -0.05 -22.87 16 8 N -0.70 -24.04 5.13 -440.03 -2.26 -26.30 16 9 C 0.12 3.93 4.32 45.52 0.20 4.13 16 10 H 0.09 3.01 7.47 -2.39 -0.02 2.99 16 11 C -0.14 -4.28 7.58 31.12 0.24 -4.05 16 12 C 0.15 5.45 4.55 45.52 0.21 5.66 16 13 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 14 N -0.71 -33.44 5.17 -320.44 -1.66 -35.10 16 15 C -0.25 -13.00 9.97 84.04 0.84 -12.17 16 16 H 0.07 3.79 7.83 -2.92 -0.02 3.77 16 17 C -0.07 -3.60 5.50 84.87 0.47 -3.14 16 18 N -0.96 -54.32 13.06 21.66 0.28 -54.04 16 19 Si 0.97 44.44 29.55 68.60 2.03 46.46 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 C -0.18 -6.19 7.68 31.12 0.24 -5.95 16 24 C -0.08 -1.63 4.76 -19.87 -0.09 -1.72 16 25 C -0.14 -3.17 8.98 22.27 0.20 -2.97 16 26 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 27 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 28 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 29 C -0.12 -2.30 8.71 22.27 0.19 -2.11 16 30 H 0.06 1.40 6.43 -2.39 -0.02 1.39 16 31 H 0.07 1.27 7.39 -2.39 -0.02 1.25 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.11 7.39 -2.39 -0.02 1.09 16 35 H 0.07 1.23 6.43 -2.39 -0.02 1.22 16 36 H 0.06 1.71 7.46 -2.39 -0.02 1.70 16 37 H 0.05 1.57 7.48 -2.39 -0.02 1.55 16 38 H 0.10 2.73 6.43 -2.39 -0.02 2.71 16 39 H 0.11 2.62 6.43 -2.39 -0.02 2.61 16 40 H 0.40 14.53 6.15 -92.71 -0.57 13.96 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.37 17.95 5.37 -92.71 -0.50 17.45 16 44 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 45 H 0.10 2.98 8.14 -2.39 -0.02 2.97 16 46 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.12 2.86 5.89 -2.91 -0.02 2.84 16 48 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 49 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 50 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 51 H 0.13 2.04 7.10 -2.91 -0.02 2.02 16 Total: -1.00 -64.07 398.25 3.38 -60.69 By element: Atomic # 1 Polarization: 52.33 SS G_CDS: -0.14 Total: 52.19 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 5.17 Total: -21.04 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -3.63 Total: -115.44 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -64.07 3.38 -60.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752776364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.036 kcal (2) G-P(sol) polarization free energy of solvation -64.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds