Wall clock time and date at job start Tue Mar 31 2020 16:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50691 * 109.47277 * 2 1 4 4 C 1.38268 * 120.00022 * 265.25230 * 3 2 1 5 5 C 1.38208 * 119.99884 * 180.29584 * 4 3 2 6 6 C 1.38261 * 120.00050 * 359.70494 * 5 4 3 7 7 C 1.38213 * 120.00030 * 0.02562 * 6 5 4 8 8 C 1.38217 * 120.00218 * 85.00096 * 3 2 1 9 9 C 1.50694 * 119.99644 * 359.97438 * 8 3 2 10 10 C 1.50699 * 109.47554 * 84.72709 * 9 8 3 11 11 O 1.21286 * 119.99302 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00187 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00002 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47161 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.69984 * 299.62070 * 14 13 12 16 16 C 1.52760 * 109.50741 * 179.49877 * 14 13 12 17 17 C 1.53039 * 109.38187 * 185.70684 * 16 14 13 18 18 C 1.53044 * 109.53776 * 61.23892 * 17 16 14 19 19 C 1.53191 * 109.31594 * 298.63576 * 18 17 16 20 20 N 1.46923 * 108.77153 * 54.63286 * 19 18 17 21 21 C 1.36944 * 120.62761 * 126.37102 * 20 19 18 22 22 H 1.07996 * 119.99537 * 211.18157 * 21 20 19 23 23 C 1.38807 * 119.99884 * 31.18613 * 21 20 19 24 24 N 1.31622 * 120.00059 * 21.70817 * 23 21 20 25 25 Si 1.86806 * 119.99760 * 201.70913 * 23 21 20 26 26 H 1.48497 * 109.46942 * 269.99678 * 25 23 21 27 27 H 1.48500 * 109.46938 * 29.99983 * 25 23 21 28 28 H 1.48505 * 109.46731 * 150.00076 * 25 23 21 29 29 H 1.08998 * 109.46781 * 59.99932 * 1 2 3 30 30 H 1.08993 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47183 * 300.00351 * 1 2 3 32 32 H 1.09003 * 109.46802 * 239.99931 * 2 1 3 33 33 H 1.09001 * 109.46934 * 120.00581 * 2 1 3 34 34 H 1.08003 * 119.99907 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.00063 * 179.72089 * 5 4 3 36 36 H 1.08006 * 120.00045 * 179.97438 * 6 5 4 37 37 H 1.07996 * 120.00148 * 179.97438 * 7 6 5 38 38 H 1.09009 * 109.47080 * 324.72536 * 9 8 3 39 39 H 1.09001 * 109.47278 * 204.72959 * 9 8 3 40 40 H 0.97002 * 120.00221 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.46932 * 60.00023 * 13 12 10 42 42 H 1.09000 * 109.46980 * 299.99990 * 13 12 10 43 43 H 1.09000 * 109.56728 * 65.67275 * 16 14 13 44 44 H 1.08998 * 109.38941 * 305.63054 * 16 14 13 45 45 H 1.09003 * 109.45674 * 301.22244 * 17 16 14 46 46 H 1.08997 * 109.44933 * 181.25312 * 17 16 14 47 47 H 1.09006 * 109.49409 * 178.68016 * 18 17 16 48 48 H 1.09000 * 109.49394 * 58.58659 * 18 17 16 49 49 H 1.09003 * 109.58514 * 294.85012 * 19 18 17 50 50 H 1.09000 * 109.70266 * 174.48977 * 19 18 17 51 51 H 0.96998 * 119.99800 * 4.92046 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3563 2.0395 -1.1933 5 6 2.8228 3.3404 -1.1928 6 6 2.9599 4.0252 0.0005 7 6 2.6308 3.4086 1.1929 8 6 2.1645 2.1071 1.1924 9 6 1.8055 1.4348 2.4924 10 6 2.9820 0.6318 2.9844 11 8 4.0106 0.6075 2.3422 12 7 2.8912 -0.0592 4.1379 13 6 4.0352 -0.8394 4.6165 14 6 3.6706 -1.5221 5.9363 15 1 3.4171 -0.7686 6.6819 16 6 4.8587 -2.3458 6.4297 17 6 4.4459 -3.1392 7.6716 18 6 3.3077 -4.0970 7.3121 19 6 2.0986 -3.2891 6.8305 20 7 2.5226 -2.4151 5.7283 21 6 1.8637 -2.4364 4.5280 22 1 2.4003 -2.2297 3.6138 23 6 0.5063 -2.7236 4.4864 24 7 -0.2349 -2.5569 5.5612 25 14 -0.2684 -3.3467 2.9049 26 1 -0.7408 -2.1935 2.0973 27 1 0.7386 -4.1147 2.1295 28 1 -1.4191 -4.2271 3.2308 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.2489 1.5047 -2.1255 35 1 3.0801 3.8222 -2.1245 36 1 3.3248 5.0417 0.0009 37 1 2.7382 3.9433 2.1250 38 1 0.9537 0.7728 2.3361 39 1 1.5466 2.1912 3.2333 40 1 2.0687 -0.0395 4.6517 41 1 4.8867 -0.1772 4.7726 42 1 4.2942 -1.5961 3.8759 43 1 5.6849 -1.6807 6.6809 44 1 5.1719 -3.0349 5.6454 45 1 4.1099 -2.4508 8.4471 46 1 5.2991 -3.7102 8.0377 47 1 3.0301 -4.6784 8.1915 48 1 3.6351 -4.7696 6.5193 49 1 1.7142 -2.6826 7.6507 50 1 1.3196 -3.9666 6.4808 51 1 0.1512 -2.1665 6.3608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752820342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:00 Heat of formation + Delta-G solvation = -12.209696 kcal Electronic energy + Delta-G solvation = -29764.118209 eV Core-core repulsion = 26048.850080 eV Total energy + Delta-G solvation = -3715.268129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.96198 -38.76800 -37.73236 -34.22897 -34.06036 -33.37751 -32.38060 -30.83963 -29.76030 -29.33353 -27.65525 -25.73291 -24.55256 -23.62531 -22.11592 -21.93150 -20.97989 -20.42898 -19.63396 -19.10342 -17.38235 -16.34297 -16.20588 -15.96669 -15.40967 -15.29020 -14.71547 -14.31521 -13.93952 -13.79588 -13.71145 -13.48622 -13.40702 -13.30309 -13.14448 -12.89576 -12.72700 -12.40823 -12.21583 -11.96612 -11.83337 -11.58749 -11.50313 -11.32586 -11.13944 -11.08431 -10.74728 -10.58899 -10.45698 -10.42630 -10.27368 -10.13913 -10.01534 -9.76893 -9.38036 -9.15481 -8.62133 -8.52522 -8.37606 -8.19687 -6.91852 -6.09877 -3.34049 1.51510 1.56991 3.24594 3.39997 3.47647 3.61391 3.74786 4.12635 4.48599 4.86118 4.91578 5.05460 5.08139 5.11283 5.30904 5.33010 5.39835 5.42827 5.45834 5.50946 5.59227 5.60552 5.65081 5.69678 5.80066 5.83836 5.84949 5.95156 6.04845 6.06054 6.17674 6.21491 6.21959 6.25418 6.29066 6.34249 6.47683 6.48178 6.51526 6.57306 6.63483 6.64594 6.67486 6.83784 6.87912 7.06254 7.14407 7.17844 7.21095 8.00997 8.27689 8.52047 8.90586 9.02175 9.76233 10.22180 11.15365 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.004152 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.409519 B = 6742.663955 C = 8193.876094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.059 4.059 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.129 4.129 7 C -0.107 4.107 8 C -0.052 4.052 9 C -0.110 4.110 10 C 0.511 3.489 11 O -0.556 6.556 12 N -0.693 5.693 13 C 0.139 3.861 14 C 0.163 3.837 15 H 0.029 0.971 16 C -0.128 4.128 17 C -0.107 4.107 18 C -0.139 4.139 19 C 0.152 3.848 20 N -0.596 5.596 21 C -0.343 4.343 22 H 0.062 0.938 23 C -0.019 4.019 24 N -0.917 5.917 25 Si 1.052 2.948 26 H -0.287 1.287 27 H -0.293 1.293 28 H -0.287 1.287 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.413 0.587 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.048 0.952 48 H 0.056 0.944 49 H 0.016 0.984 50 H 0.077 0.923 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 7.906 -5.119 10.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.059 4.059 4 C -0.138 4.138 5 C -0.142 4.142 6 C -0.147 4.147 7 C -0.125 4.125 8 C -0.053 4.053 9 C -0.150 4.150 10 C 0.296 3.704 11 O -0.436 6.436 12 N -0.344 5.344 13 C 0.014 3.986 14 C 0.056 3.944 15 H 0.046 0.954 16 C -0.168 4.168 17 C -0.145 4.145 18 C -0.178 4.178 19 C 0.026 3.974 20 N -0.321 5.321 21 C -0.472 4.472 22 H 0.079 0.921 23 C -0.221 4.221 24 N -0.558 5.558 25 Si 0.882 3.118 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.213 1.213 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.250 0.750 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.034 0.966 50 H 0.095 0.905 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.179 7.321 -6.257 10.142 hybrid contribution 1.138 0.442 0.983 1.567 sum 4.317 7.763 -5.275 10.331 Atomic orbital electron populations 1.21793 0.94610 1.02220 1.01830 1.20599 0.96114 0.92712 1.03427 1.19723 0.97801 0.95786 0.92553 1.20956 1.00424 0.95169 0.97284 1.21029 1.00415 0.94921 0.97802 1.20996 1.01308 0.99743 0.92623 1.20947 0.98963 0.94597 0.97995 1.19193 0.98896 0.93772 0.93402 1.20758 0.98628 1.00163 0.95441 1.20273 0.88857 0.80049 0.81181 1.90659 1.31344 1.64833 1.56753 1.45973 1.17696 1.47199 1.23540 1.21203 0.87576 0.93782 0.96001 1.20617 0.88892 0.91320 0.93577 0.95371 1.21866 0.97797 0.99133 0.97980 1.21360 0.97864 0.98092 0.97187 1.22076 0.97812 0.98193 0.99712 1.20949 0.94250 0.92419 0.89733 1.44157 1.33667 1.41599 1.12683 1.19997 0.92379 1.49927 0.84933 0.92066 1.25733 0.92606 0.99959 1.03830 1.70767 1.37497 1.42868 1.04622 0.83727 0.75809 0.77120 0.75169 1.21422 1.21938 1.21310 0.92826 0.92043 0.92312 0.91197 0.90413 0.86404 0.86549 0.86506 0.86442 0.87488 0.88620 0.75024 0.92939 0.91750 0.92912 0.92031 0.92881 0.93430 0.93324 0.92487 0.96565 0.90492 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.72 37.16 0.36 -1.71 16 2 C -0.09 -1.40 5.38 -27.88 -0.15 -1.55 16 3 C -0.06 -0.90 5.13 -104.62 -0.54 -1.43 16 4 C -0.12 -1.63 9.68 -39.58 -0.38 -2.01 16 5 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 6 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 7 C -0.11 -1.50 9.68 -39.58 -0.38 -1.88 16 8 C -0.05 -0.81 4.37 -104.63 -0.46 -1.27 16 9 C -0.11 -1.73 5.16 -29.04 -0.15 -1.88 16 10 C 0.51 9.57 7.00 -10.99 -0.08 9.49 16 11 O -0.56 -12.06 16.03 5.55 0.09 -11.97 16 12 N -0.69 -13.12 3.83 -60.29 -0.23 -13.35 16 13 C 0.14 2.64 4.42 -4.04 -0.02 2.62 16 14 C 0.16 3.09 3.00 -67.82 -0.20 2.89 16 15 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 16 C -0.13 -2.13 5.34 -26.83 -0.14 -2.28 16 17 C -0.11 -1.71 5.89 -26.69 -0.16 -1.87 16 18 C -0.14 -2.49 6.08 -26.61 -0.16 -2.66 16 19 C 0.15 3.29 4.66 -3.71 -0.02 3.27 16 20 N -0.60 -13.22 2.81 -165.03 -0.46 -13.68 16 21 C -0.34 -8.36 6.88 -15.06 -0.10 -8.47 16 22 H 0.06 1.56 5.90 -52.49 -0.31 1.26 16 23 C -0.02 -0.47 4.75 -17.43 -0.08 -0.56 16 24 N -0.92 -24.93 12.51 55.49 0.69 -24.23 16 25 Si 1.05 23.71 29.97 -169.99 -5.09 18.62 16 26 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.84 6.79 -51.93 -0.35 0.49 16 32 H 0.07 0.97 8.05 -51.93 -0.42 0.56 16 33 H 0.08 1.39 6.40 -51.93 -0.33 1.05 16 34 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.70 5.63 -51.92 -0.29 1.41 16 39 H 0.10 1.27 8.05 -51.93 -0.42 0.85 16 40 H 0.41 8.08 7.37 -40.82 -0.30 7.78 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.37 7.43 -51.93 -0.39 0.98 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.02 0.36 7.79 -51.93 -0.40 -0.05 16 50 H 0.08 1.89 6.45 -51.93 -0.34 1.55 16 51 H 0.27 7.35 6.52 -40.82 -0.27 7.09 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -28.58 393.79 -11.06 -39.65 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -8.53 Total: 12.28 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -3.46 Total: -13.24 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.00 Total: -51.26 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.09 Total: 18.62 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.58 -11.06 -39.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752820342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.436 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds