Wall clock time and date at job start Tue Mar 31 2020 16:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50691 * 109.47277 * 2 1 4 4 C 1.38268 * 120.00022 * 265.25230 * 3 2 1 5 5 C 1.38208 * 119.99884 * 180.29584 * 4 3 2 6 6 C 1.38261 * 120.00050 * 359.70494 * 5 4 3 7 7 C 1.38213 * 120.00030 * 0.02562 * 6 5 4 8 8 C 1.38217 * 120.00218 * 85.00096 * 3 2 1 9 9 C 1.50694 * 119.99644 * 359.97438 * 8 3 2 10 10 C 1.50699 * 109.47554 * 84.72709 * 9 8 3 11 11 O 1.21286 * 119.99302 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00187 * 179.97438 * 10 9 8 13 13 C 1.46505 * 120.00002 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47161 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.69984 * 299.62070 * 14 13 12 16 16 C 1.52760 * 109.50741 * 179.49877 * 14 13 12 17 17 C 1.53039 * 109.38187 * 185.70684 * 16 14 13 18 18 C 1.53044 * 109.53776 * 61.23892 * 17 16 14 19 19 C 1.53191 * 109.31594 * 298.63576 * 18 17 16 20 20 N 1.46923 * 108.77153 * 54.63286 * 19 18 17 21 21 C 1.36944 * 120.62761 * 126.37102 * 20 19 18 22 22 H 1.07996 * 119.99537 * 211.18157 * 21 20 19 23 23 C 1.38807 * 119.99884 * 31.18613 * 21 20 19 24 24 N 1.31622 * 120.00059 * 21.70817 * 23 21 20 25 25 Si 1.86806 * 119.99760 * 201.70913 * 23 21 20 26 26 H 1.48497 * 109.46942 * 269.99678 * 25 23 21 27 27 H 1.48500 * 109.46938 * 29.99983 * 25 23 21 28 28 H 1.48505 * 109.46731 * 150.00076 * 25 23 21 29 29 H 1.08998 * 109.46781 * 59.99932 * 1 2 3 30 30 H 1.08993 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47183 * 300.00351 * 1 2 3 32 32 H 1.09003 * 109.46802 * 239.99931 * 2 1 3 33 33 H 1.09001 * 109.46934 * 120.00581 * 2 1 3 34 34 H 1.08003 * 119.99907 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.00063 * 179.72089 * 5 4 3 36 36 H 1.08006 * 120.00045 * 179.97438 * 6 5 4 37 37 H 1.07996 * 120.00148 * 179.97438 * 7 6 5 38 38 H 1.09009 * 109.47080 * 324.72536 * 9 8 3 39 39 H 1.09001 * 109.47278 * 204.72959 * 9 8 3 40 40 H 0.97002 * 120.00221 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.46932 * 60.00023 * 13 12 10 42 42 H 1.09000 * 109.46980 * 299.99990 * 13 12 10 43 43 H 1.09000 * 109.56728 * 65.67275 * 16 14 13 44 44 H 1.08998 * 109.38941 * 305.63054 * 16 14 13 45 45 H 1.09003 * 109.45674 * 301.22244 * 17 16 14 46 46 H 1.08997 * 109.44933 * 181.25312 * 17 16 14 47 47 H 1.09006 * 109.49409 * 178.68016 * 18 17 16 48 48 H 1.09000 * 109.49394 * 58.58659 * 18 17 16 49 49 H 1.09003 * 109.58514 * 294.85012 * 19 18 17 50 50 H 1.09000 * 109.70266 * 174.48977 * 19 18 17 51 51 H 0.96998 * 119.99800 * 4.92046 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3563 2.0395 -1.1933 5 6 2.8228 3.3404 -1.1928 6 6 2.9599 4.0252 0.0005 7 6 2.6308 3.4086 1.1929 8 6 2.1645 2.1071 1.1924 9 6 1.8055 1.4348 2.4924 10 6 2.9820 0.6318 2.9844 11 8 4.0106 0.6075 2.3422 12 7 2.8912 -0.0592 4.1379 13 6 4.0352 -0.8394 4.6165 14 6 3.6706 -1.5221 5.9363 15 1 3.4171 -0.7686 6.6819 16 6 4.8587 -2.3458 6.4297 17 6 4.4459 -3.1392 7.6716 18 6 3.3077 -4.0970 7.3121 19 6 2.0986 -3.2891 6.8305 20 7 2.5226 -2.4151 5.7283 21 6 1.8637 -2.4364 4.5280 22 1 2.4003 -2.2297 3.6138 23 6 0.5063 -2.7236 4.4864 24 7 -0.2349 -2.5569 5.5612 25 14 -0.2684 -3.3467 2.9049 26 1 -0.7408 -2.1935 2.0973 27 1 0.7386 -4.1147 2.1295 28 1 -1.4191 -4.2271 3.2308 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.2489 1.5047 -2.1255 35 1 3.0801 3.8222 -2.1245 36 1 3.3248 5.0417 0.0009 37 1 2.7382 3.9433 2.1250 38 1 0.9537 0.7728 2.3361 39 1 1.5466 2.1912 3.2333 40 1 2.0687 -0.0395 4.6517 41 1 4.8867 -0.1772 4.7726 42 1 4.2942 -1.5961 3.8759 43 1 5.6849 -1.6807 6.6809 44 1 5.1719 -3.0349 5.6454 45 1 4.1099 -2.4508 8.4471 46 1 5.2991 -3.7102 8.0377 47 1 3.0301 -4.6784 8.1915 48 1 3.6351 -4.7696 6.5193 49 1 1.7142 -2.6826 7.6507 50 1 1.3196 -3.9666 6.4808 51 1 0.1512 -2.1665 6.3608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752820342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:59 Heat of formation + Delta-G solvation = -25.475888 kcal Electronic energy + Delta-G solvation = -29764.693474 eV Core-core repulsion = 26048.850080 eV Total energy + Delta-G solvation = -3715.843394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.25624 -40.14990 -39.24541 -35.72811 -35.22233 -35.15583 -33.57573 -32.34836 -31.50678 -30.40123 -28.90578 -27.37388 -26.17399 -24.73502 -23.75569 -23.09404 -22.44135 -21.68616 -21.03135 -20.67127 -19.13559 -17.78345 -17.43935 -17.35134 -16.81022 -16.65080 -15.95501 -15.86424 -15.57520 -15.35178 -15.08358 -14.98527 -14.80153 -14.62884 -14.36017 -14.01806 -14.00832 -13.82365 -13.71365 -13.39983 -13.15283 -12.98763 -12.82827 -12.71197 -12.68182 -12.46744 -12.16762 -12.00655 -11.97933 -11.73702 -11.70374 -11.64816 -11.55982 -11.30086 -11.05290 -10.77799 -10.41706 -9.83652 -9.66391 -9.45443 -8.79861 -8.08491 -5.31506 0.46153 0.53814 1.55560 1.61571 1.75055 1.77535 2.41295 2.63611 2.95299 3.30225 3.48550 3.70665 3.85286 3.91045 4.00835 4.06866 4.08703 4.11450 4.18971 4.30256 4.30699 4.35350 4.43856 4.45294 4.51826 4.53563 4.63970 4.67689 4.69737 4.72322 4.76328 4.88532 4.98747 5.01110 5.06505 5.08257 5.14010 5.14692 5.25031 5.27472 5.29363 5.34075 5.35012 5.57527 5.61176 5.63777 5.65854 5.79789 6.02665 6.17139 6.51325 6.73777 7.12938 7.37442 7.85267 8.31599 9.13940 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.004152 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.409519 B = 6742.663955 C = 8193.876094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.079 4.079 4 C -0.129 4.129 5 C -0.122 4.122 6 C -0.130 4.130 7 C -0.119 4.119 8 C -0.075 4.075 9 C -0.103 4.103 10 C 0.512 3.488 11 O -0.587 6.587 12 N -0.695 5.695 13 C 0.144 3.856 14 C 0.162 3.838 15 H 0.033 0.967 16 C -0.123 4.123 17 C -0.102 4.102 18 C -0.131 4.131 19 C 0.157 3.843 20 N -0.609 5.609 21 C -0.323 4.323 22 H 0.048 0.952 23 C -0.058 4.058 24 N -0.944 5.944 25 Si 1.082 2.918 26 H -0.267 1.267 27 H -0.293 1.293 28 H -0.297 1.297 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.409 0.591 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.045 0.955 49 H 0.009 0.991 50 H 0.040 0.960 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 9.407 -5.651 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 C -0.079 4.079 4 C -0.147 4.147 5 C -0.140 4.140 6 C -0.148 4.148 7 C -0.137 4.137 8 C -0.076 4.076 9 C -0.142 4.142 10 C 0.299 3.701 11 O -0.468 6.468 12 N -0.345 5.345 13 C 0.020 3.980 14 C 0.057 3.943 15 H 0.051 0.949 16 C -0.163 4.163 17 C -0.139 4.139 18 C -0.170 4.170 19 C 0.031 3.969 20 N -0.335 5.335 21 C -0.453 4.453 22 H 0.065 0.935 23 C -0.256 4.256 24 N -0.587 5.587 25 Si 0.909 3.091 26 H -0.193 1.193 27 H -0.219 1.219 28 H -0.223 1.223 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.154 0.846 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.118 0.882 39 H 0.136 0.864 40 H 0.245 0.755 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.064 0.936 49 H 0.027 0.973 50 H 0.059 0.941 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.455 8.831 -6.783 11.993 hybrid contribution 0.831 0.006 1.127 1.400 sum 5.286 8.838 -5.656 11.749 Atomic orbital electron populations 1.21766 0.93795 1.02007 1.02505 1.20537 0.96879 0.93049 1.02143 1.19844 0.98946 0.95690 0.93451 1.21242 1.00125 0.95977 0.97323 1.21437 0.99021 0.94426 0.99121 1.21388 1.00298 1.01006 0.92105 1.21213 0.98895 0.94214 0.99417 1.19290 1.00478 0.94715 0.93103 1.20719 0.96778 1.00155 0.96585 1.20776 0.89272 0.79619 0.80435 1.90627 1.32834 1.65940 1.57427 1.46012 1.17465 1.47202 1.23783 1.21144 0.88194 0.93424 0.95248 1.20764 0.88688 0.91280 0.93602 0.94943 1.21826 0.97343 0.99138 0.97979 1.21344 0.97871 0.97854 0.96864 1.21967 0.96907 0.98129 1.00018 1.20815 0.95000 0.91956 0.89124 1.44331 1.34312 1.42713 1.12163 1.19925 0.92032 1.47950 0.85423 0.93474 1.26494 0.93422 1.00694 1.05022 1.70846 1.37799 1.45090 1.04935 0.83299 0.74942 0.77258 0.73583 1.19261 1.21937 1.22312 0.90724 0.92618 0.93030 0.90299 0.93780 0.84598 0.83479 0.83667 0.85194 0.88176 0.86404 0.75455 0.91372 0.94448 0.89956 0.93188 0.92122 0.90507 0.91293 0.93633 0.97288 0.94125 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.72 71.98 0.70 -3.28 16 2 C -0.09 -2.74 5.38 29.85 0.16 -2.58 16 3 C -0.08 -2.38 5.13 -19.87 -0.10 -2.48 16 4 C -0.13 -3.24 9.68 22.27 0.22 -3.03 16 5 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 6 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 7 C -0.12 -3.17 9.68 22.27 0.22 -2.95 16 8 C -0.08 -2.31 4.37 -19.87 -0.09 -2.40 16 9 C -0.10 -3.26 5.16 29.10 0.15 -3.11 16 10 C 0.51 19.50 7.00 87.66 0.61 20.12 16 11 O -0.59 -25.84 16.03 -3.05 -0.05 -25.89 16 12 N -0.69 -26.78 3.83 -463.06 -1.77 -28.55 16 13 C 0.14 5.51 4.42 86.38 0.38 5.89 16 14 C 0.16 6.08 3.00 44.83 0.13 6.21 16 15 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 16 C -0.12 -3.86 5.34 30.53 0.16 -3.70 16 17 C -0.10 -2.97 5.89 30.62 0.18 -2.79 16 18 C -0.13 -4.56 6.08 30.67 0.19 -4.38 16 19 C 0.16 6.86 4.66 86.36 0.40 7.26 16 20 N -0.61 -27.42 2.81 -676.03 -1.90 -29.33 16 21 C -0.32 -16.19 6.88 84.03 0.58 -15.61 16 22 H 0.05 2.50 5.90 -2.91 -0.02 2.48 16 23 C -0.06 -3.05 4.75 84.86 0.40 -2.65 16 24 N -0.94 -52.88 12.51 21.65 0.27 -52.61 16 25 Si 1.08 49.13 29.97 68.60 2.06 51.18 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 28 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.48 6.79 -2.39 -0.02 1.46 16 32 H 0.08 2.20 8.05 -2.39 -0.02 2.18 16 33 H 0.04 1.63 6.40 -2.39 -0.02 1.62 16 34 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.10 3.29 5.63 -2.38 -0.01 3.28 16 39 H 0.12 3.09 8.05 -2.39 -0.02 3.07 16 40 H 0.41 16.40 7.37 -92.71 -0.68 15.71 16 41 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.04 1.63 7.43 -2.39 -0.02 1.61 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 48 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.01 0.41 7.79 -2.39 -0.02 0.39 16 50 H 0.04 2.06 6.45 -2.39 -0.02 2.04 16 51 H 0.26 14.65 6.52 -92.71 -0.60 14.05 16 Total: -1.00 -63.49 393.79 3.74 -59.75 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: 0.39 Total: 40.06 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 4.74 Total: -14.62 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -3.40 Total: -110.49 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.06 Total: 51.18 kcal Total: -63.49 3.74 -59.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752820342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.275 kcal (2) G-P(sol) polarization free energy of solvation -63.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds