Wall clock time and date at job start Tue Mar 31 2020 16:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46948 * 2 1 4 4 C 1.38261 * 119.99804 * 264.99826 * 3 2 1 5 5 C 1.38217 * 119.99619 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.00533 * 0.02813 * 5 4 3 7 7 C 1.38218 * 119.99799 * 359.96885 * 6 5 4 8 8 C 1.38216 * 120.00051 * 84.72278 * 3 2 1 9 9 C 1.50694 * 120.00185 * 0.02562 * 8 3 2 10 10 C 1.50702 * 109.47499 * 84.99634 * 9 8 3 11 11 O 1.21281 * 119.99774 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00056 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99668 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46574 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.58546 * 59.68832 * 14 13 12 16 16 C 1.53188 * 109.58359 * 179.97438 * 14 13 12 17 17 C 1.53037 * 109.31449 * 174.42250 * 16 14 13 18 18 C 1.53040 * 109.54034 * 298.63476 * 17 16 14 19 19 C 1.53189 * 109.31030 * 61.36079 * 18 17 16 20 20 N 1.46928 * 109.58848 * 299.40179 * 14 13 12 21 21 C 1.36936 * 120.62826 * 6.61180 * 20 14 13 22 22 H 1.08001 * 119.99909 * 329.10000 * 21 20 14 23 23 C 1.38815 * 119.99908 * 149.10666 * 21 20 14 24 24 N 1.31614 * 119.99634 * 346.08454 * 23 21 20 25 25 Si 1.86798 * 120.00064 * 166.08973 * 23 21 20 26 26 H 1.48490 * 109.47412 * 59.99394 * 25 23 21 27 27 H 1.48495 * 109.47220 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47037 * 299.99403 * 25 23 21 29 29 H 1.08993 * 109.47246 * 300.00151 * 1 2 3 30 30 H 1.09000 * 109.46928 * 60.00479 * 1 2 3 31 31 H 1.09003 * 109.46720 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47342 * 119.99535 * 2 1 3 33 33 H 1.09004 * 109.47669 * 239.99794 * 2 1 3 34 34 H 1.07996 * 119.99882 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.99771 * 179.97438 * 5 4 3 36 36 H 1.07998 * 120.00285 * 179.97438 * 6 5 4 37 37 H 1.08003 * 120.00268 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47442 * 205.00042 * 9 8 3 39 39 H 1.09004 * 109.46810 * 324.99691 * 9 8 3 40 40 H 0.97003 * 119.99880 * 0.02562 * 12 10 9 41 41 H 1.08990 * 109.47088 * 299.99917 * 13 12 10 42 42 H 1.08997 * 109.46736 * 60.00157 * 13 12 10 43 43 H 1.09003 * 109.49661 * 294.37427 * 16 14 13 44 44 H 1.09001 * 109.50303 * 54.46822 * 16 14 13 45 45 H 1.09002 * 109.45671 * 58.65315 * 17 16 14 46 46 H 1.09002 * 109.46384 * 178.62968 * 17 16 14 47 47 H 1.08998 * 109.49996 * 181.31612 * 18 17 16 48 48 H 1.09004 * 109.49578 * 301.41205 * 18 17 16 49 49 H 1.09006 * 109.58996 * 65.15860 * 19 18 17 50 50 H 1.09003 * 109.58591 * 185.43740 * 19 18 17 51 51 H 0.97000 * 119.99597 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0378 -1.1928 5 6 2.8213 3.3411 -1.1928 6 6 2.9533 4.0277 -0.0001 7 6 2.6245 3.4109 1.1923 8 6 2.1588 2.1091 1.1919 9 6 1.7951 1.4386 2.4915 10 6 2.9724 0.6427 2.9930 11 8 4.0054 0.6224 2.3578 12 7 2.8774 -0.0465 4.1473 13 6 4.0218 -0.8207 4.6344 14 6 3.6524 -1.5013 5.9540 15 1 2.8011 -2.1639 5.7976 16 6 4.8472 -2.3122 6.4656 17 6 4.5207 -2.8759 7.8504 18 6 4.2661 -1.7238 8.8250 19 6 3.0647 -0.9062 8.3402 20 7 3.3062 -0.4820 6.9540 21 6 3.2138 0.8380 6.6016 22 1 3.8310 1.2290 5.8062 23 6 2.3270 1.6735 7.2667 24 7 1.3895 1.1602 8.0348 25 14 2.4642 3.5262 7.0716 26 1 2.2933 3.8873 5.6414 27 1 1.4080 4.1885 7.8784 28 1 3.8000 3.9757 7.5394 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 2.2584 1.5013 -2.1245 35 1 3.0785 3.8229 -2.1246 36 1 3.3133 5.0459 -0.0001 37 1 2.7281 3.9471 2.1241 38 1 1.5278 2.1957 3.2287 39 1 0.9475 0.7720 2.3316 40 1 2.0511 -0.0306 4.6551 41 1 4.2888 -1.5776 3.8971 42 1 4.8695 -0.1544 4.7945 43 1 5.0513 -3.1327 5.7777 44 1 5.7230 -1.6668 6.5328 45 1 3.6303 -3.5015 7.7870 46 1 5.3598 -3.4736 8.2063 47 1 4.0566 -2.1255 9.8164 48 1 5.1473 -1.0839 8.8700 49 1 2.1647 -1.5198 8.3808 50 1 2.9385 -0.0300 8.9761 51 1 0.7696 1.7441 8.4993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752820343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:04 Heat of formation + Delta-G solvation = -10.472440 kcal Electronic energy + Delta-G solvation = -29440.553177 eV Core-core repulsion = 25725.360381 eV Total energy + Delta-G solvation = -3715.192796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.96744 -38.70347 -37.58084 -34.26142 -34.06959 -33.07814 -32.38387 -30.74825 -29.92936 -29.41280 -27.64650 -25.78556 -24.55778 -23.72967 -22.18885 -21.92699 -20.83702 -20.42519 -19.62211 -19.05966 -16.93596 -16.31499 -16.05598 -15.96574 -15.48020 -15.30202 -14.72593 -14.26462 -14.04564 -13.77812 -13.72661 -13.52887 -13.43513 -13.20676 -12.90733 -12.88512 -12.70449 -12.46605 -12.04436 -12.02756 -11.92336 -11.70161 -11.48733 -11.24690 -11.13818 -10.96342 -10.80000 -10.69712 -10.57757 -10.54079 -10.31466 -10.16352 -10.01440 -9.56168 -9.46018 -9.24448 -8.62816 -8.58919 -8.40430 -8.18613 -6.67953 -5.86410 -3.32429 1.50118 1.56089 3.25359 3.30744 3.37661 3.40706 3.75028 4.13319 4.40636 4.79623 4.86531 5.03750 5.10834 5.20194 5.21585 5.30536 5.36325 5.39103 5.50712 5.54467 5.58207 5.62619 5.64201 5.68862 5.73081 5.83039 5.91608 5.96436 5.99340 6.05680 6.13170 6.15144 6.23850 6.30933 6.33497 6.35383 6.41334 6.58645 6.62056 6.65194 6.69724 6.72006 6.83935 6.84450 6.97859 7.16929 7.22327 7.36214 7.62839 7.76886 8.30683 8.38684 8.92579 9.14141 9.75737 10.34139 11.20618 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013044 B = 0.003847 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.024635 B = 7277.464716 C = 8442.999597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.065 4.065 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.051 4.051 9 C -0.111 4.111 10 C 0.511 3.489 11 O -0.556 6.556 12 N -0.695 5.695 13 C 0.136 3.864 14 C 0.161 3.839 15 H 0.031 0.969 16 C -0.128 4.128 17 C -0.107 4.107 18 C -0.144 4.144 19 C 0.174 3.826 20 N -0.588 5.588 21 C -0.250 4.250 22 H 0.069 0.931 23 C 0.008 3.992 24 N -0.900 5.900 25 Si 0.893 3.107 26 H -0.282 1.282 27 H -0.290 1.290 28 H -0.284 1.284 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.414 0.586 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.044 0.956 47 H 0.046 0.954 48 H 0.053 0.947 49 H 0.018 0.982 50 H 0.084 0.916 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 -2.417 -11.693 11.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.065 4.065 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.051 4.051 9 C -0.150 4.150 10 C 0.297 3.703 11 O -0.436 6.436 12 N -0.346 5.346 13 C 0.012 3.988 14 C 0.054 3.946 15 H 0.049 0.951 16 C -0.167 4.167 17 C -0.145 4.145 18 C -0.184 4.184 19 C 0.048 3.952 20 N -0.312 5.312 21 C -0.380 4.380 22 H 0.087 0.913 23 C -0.191 4.191 24 N -0.544 5.544 25 Si 0.723 3.277 26 H -0.208 1.208 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.252 0.748 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.036 0.964 50 H 0.102 0.898 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.422 -2.351 -12.025 12.260 hybrid contribution -0.231 1.139 0.409 1.232 sum -0.653 -1.212 -11.616 11.698 Atomic orbital electron populations 1.21778 0.94823 1.01706 1.02165 1.20548 0.95852 0.92985 1.03051 1.19652 0.98618 0.95675 0.92597 1.20918 1.00647 0.95196 0.97160 1.21030 1.00477 0.94906 0.97795 1.21033 1.00949 0.99830 0.92567 1.21049 0.98325 0.94698 0.98212 1.19195 0.98780 0.93811 0.93310 1.20762 0.98094 1.00502 0.95671 1.20254 0.89063 0.79880 0.81131 1.90658 1.31006 1.64050 1.57843 1.46000 1.17699 1.48586 1.22347 1.21252 0.89360 0.94074 0.94157 1.20719 0.94503 0.90925 0.88442 0.95125 1.21941 0.99454 0.98852 0.96488 1.21362 0.99877 0.97605 0.95656 1.22196 1.01687 0.97438 0.97049 1.20753 0.91365 0.97192 0.85878 1.44066 1.81732 1.02497 1.02912 1.19157 1.15943 0.84335 1.18539 0.91302 1.25058 0.95606 0.97888 1.00551 1.69992 1.17297 1.33700 1.33367 0.86528 0.77329 0.86132 0.77755 1.20800 1.21635 1.21074 0.92313 0.92661 0.92375 0.90796 0.91259 0.86491 0.86533 0.86410 0.86193 0.87939 0.88193 0.74830 0.92860 0.91763 0.93059 0.92127 0.92880 0.93738 0.93530 0.92863 0.96394 0.89793 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.72 37.16 0.36 -1.16 16 2 C -0.09 -1.07 5.38 -27.88 -0.15 -1.22 16 3 C -0.07 -0.93 5.13 -104.62 -0.54 -1.46 16 4 C -0.12 -1.55 9.68 -39.58 -0.38 -1.94 16 5 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 6 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 7 C -0.10 -1.60 9.68 -39.58 -0.38 -1.98 16 8 C -0.05 -0.79 4.37 -104.62 -0.46 -1.24 16 9 C -0.11 -1.73 5.16 -29.04 -0.15 -1.88 16 10 C 0.51 9.52 7.03 -10.98 -0.08 9.44 16 11 O -0.56 -11.99 16.03 5.56 0.09 -11.90 16 12 N -0.70 -13.03 3.85 -60.29 -0.23 -13.26 16 13 C 0.14 2.55 4.43 -4.04 -0.02 2.53 16 14 C 0.16 3.07 3.00 -67.60 -0.20 2.87 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C -0.13 -2.13 5.37 -26.61 -0.14 -2.28 16 17 C -0.11 -1.75 5.88 -26.69 -0.16 -1.90 16 18 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 19 C 0.17 3.86 5.26 -3.69 -0.02 3.84 16 20 N -0.59 -13.23 2.98 -164.74 -0.49 -13.72 16 21 C -0.25 -6.12 7.00 -15.06 -0.11 -6.23 16 22 H 0.07 1.75 5.85 -52.49 -0.31 1.44 16 23 C 0.01 0.21 4.97 -17.43 -0.09 0.12 16 24 N -0.90 -23.92 11.23 55.49 0.62 -23.30 16 25 Si 0.89 20.67 29.58 -169.99 -5.03 15.65 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H 0.06 0.62 6.77 -51.93 -0.35 0.27 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.02 6.43 -51.93 -0.33 0.69 16 33 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 34 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.80 8.06 -52.48 -0.42 1.37 16 38 H 0.10 1.61 8.05 -51.93 -0.42 1.19 16 39 H 0.10 1.34 5.60 -51.93 -0.29 1.05 16 40 H 0.41 8.02 7.43 -40.82 -0.30 7.72 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.34 7.40 -51.93 -0.38 0.96 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 2.12 6.20 -51.93 -0.32 1.79 16 51 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -28.47 395.14 -11.16 -39.63 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -8.61 Total: 10.27 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.47 Total: -9.32 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.10 Total: -50.28 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.47 -11.16 -39.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752820343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.157 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds