Wall clock time and date at job start Tue Mar 31 2020 16:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46948 * 2 1 4 4 C 1.38261 * 119.99804 * 264.99826 * 3 2 1 5 5 C 1.38217 * 119.99619 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.00533 * 0.02813 * 5 4 3 7 7 C 1.38218 * 119.99799 * 359.96885 * 6 5 4 8 8 C 1.38216 * 120.00051 * 84.72278 * 3 2 1 9 9 C 1.50694 * 120.00185 * 0.02562 * 8 3 2 10 10 C 1.50702 * 109.47499 * 84.99634 * 9 8 3 11 11 O 1.21281 * 119.99774 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00056 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99668 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46574 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.58546 * 59.68832 * 14 13 12 16 16 C 1.53188 * 109.58359 * 179.97438 * 14 13 12 17 17 C 1.53037 * 109.31449 * 174.42250 * 16 14 13 18 18 C 1.53040 * 109.54034 * 298.63476 * 17 16 14 19 19 C 1.53189 * 109.31030 * 61.36079 * 18 17 16 20 20 N 1.46928 * 109.58848 * 299.40179 * 14 13 12 21 21 C 1.36936 * 120.62826 * 6.61180 * 20 14 13 22 22 H 1.08001 * 119.99909 * 329.10000 * 21 20 14 23 23 C 1.38815 * 119.99908 * 149.10666 * 21 20 14 24 24 N 1.31614 * 119.99634 * 346.08454 * 23 21 20 25 25 Si 1.86798 * 120.00064 * 166.08973 * 23 21 20 26 26 H 1.48490 * 109.47412 * 59.99394 * 25 23 21 27 27 H 1.48495 * 109.47220 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47037 * 299.99403 * 25 23 21 29 29 H 1.08993 * 109.47246 * 300.00151 * 1 2 3 30 30 H 1.09000 * 109.46928 * 60.00479 * 1 2 3 31 31 H 1.09003 * 109.46720 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47342 * 119.99535 * 2 1 3 33 33 H 1.09004 * 109.47669 * 239.99794 * 2 1 3 34 34 H 1.07996 * 119.99882 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.99771 * 179.97438 * 5 4 3 36 36 H 1.07998 * 120.00285 * 179.97438 * 6 5 4 37 37 H 1.08003 * 120.00268 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47442 * 205.00042 * 9 8 3 39 39 H 1.09004 * 109.46810 * 324.99691 * 9 8 3 40 40 H 0.97003 * 119.99880 * 0.02562 * 12 10 9 41 41 H 1.08990 * 109.47088 * 299.99917 * 13 12 10 42 42 H 1.08997 * 109.46736 * 60.00157 * 13 12 10 43 43 H 1.09003 * 109.49661 * 294.37427 * 16 14 13 44 44 H 1.09001 * 109.50303 * 54.46822 * 16 14 13 45 45 H 1.09002 * 109.45671 * 58.65315 * 17 16 14 46 46 H 1.09002 * 109.46384 * 178.62968 * 17 16 14 47 47 H 1.08998 * 109.49996 * 181.31612 * 18 17 16 48 48 H 1.09004 * 109.49578 * 301.41205 * 18 17 16 49 49 H 1.09006 * 109.58996 * 65.15860 * 19 18 17 50 50 H 1.09003 * 109.58591 * 185.43740 * 19 18 17 51 51 H 0.97000 * 119.99597 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3611 2.0378 -1.1928 5 6 2.8213 3.3411 -1.1928 6 6 2.9533 4.0277 -0.0001 7 6 2.6245 3.4109 1.1923 8 6 2.1588 2.1091 1.1919 9 6 1.7951 1.4386 2.4915 10 6 2.9724 0.6427 2.9930 11 8 4.0054 0.6224 2.3578 12 7 2.8774 -0.0465 4.1473 13 6 4.0218 -0.8207 4.6344 14 6 3.6524 -1.5013 5.9540 15 1 2.8011 -2.1639 5.7976 16 6 4.8472 -2.3122 6.4656 17 6 4.5207 -2.8759 7.8504 18 6 4.2661 -1.7238 8.8250 19 6 3.0647 -0.9062 8.3402 20 7 3.3062 -0.4820 6.9540 21 6 3.2138 0.8380 6.6016 22 1 3.8310 1.2290 5.8062 23 6 2.3270 1.6735 7.2667 24 7 1.3895 1.1602 8.0348 25 14 2.4642 3.5262 7.0716 26 1 2.2933 3.8873 5.6414 27 1 1.4080 4.1885 7.8784 28 1 3.8000 3.9757 7.5394 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 2.2584 1.5013 -2.1245 35 1 3.0785 3.8229 -2.1246 36 1 3.3133 5.0459 -0.0001 37 1 2.7281 3.9471 2.1241 38 1 1.5278 2.1957 3.2287 39 1 0.9475 0.7720 2.3316 40 1 2.0511 -0.0306 4.6551 41 1 4.2888 -1.5776 3.8971 42 1 4.8695 -0.1544 4.7945 43 1 5.0513 -3.1327 5.7777 44 1 5.7230 -1.6668 6.5328 45 1 3.6303 -3.5015 7.7870 46 1 5.3598 -3.4736 8.2063 47 1 4.0566 -2.1255 9.8164 48 1 5.1473 -1.0839 8.8700 49 1 2.1647 -1.5198 8.3808 50 1 2.9385 -0.0300 8.9761 51 1 0.7696 1.7441 8.4993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752820343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:03 Heat of formation + Delta-G solvation = -23.660588 kcal Electronic energy + Delta-G solvation = -29441.125058 eV Core-core repulsion = 25725.360381 eV Total energy + Delta-G solvation = -3715.764677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.23514 -40.06790 -39.11640 -35.65764 -35.19268 -34.88656 -33.55700 -32.29022 -31.66800 -30.38913 -28.88663 -27.45078 -26.15561 -24.68833 -23.82404 -23.07473 -22.26734 -21.65881 -21.01798 -20.61330 -18.59056 -17.67588 -17.47079 -17.32715 -16.92291 -16.61265 -16.01053 -15.86543 -15.66640 -15.26470 -14.92146 -14.79648 -14.62341 -14.51951 -14.32659 -14.06446 -13.96562 -13.84471 -13.58961 -13.51250 -13.02211 -12.88941 -12.81555 -12.68364 -12.64468 -12.56484 -12.32567 -12.14319 -12.04034 -11.79770 -11.68200 -11.55493 -11.53628 -11.15693 -11.09319 -10.77529 -10.50679 -9.80021 -9.68871 -9.46384 -8.54837 -7.82165 -5.28555 0.44461 0.51283 1.40660 1.46226 1.49931 1.76811 2.42905 2.50502 2.94337 3.33152 3.59193 3.70711 3.86573 3.99656 4.01711 4.09694 4.13879 4.22205 4.28026 4.29983 4.33339 4.43802 4.50987 4.53978 4.56364 4.63636 4.65795 4.73224 4.75735 4.78531 4.87361 4.99890 5.03214 5.08907 5.14359 5.17292 5.21541 5.24048 5.28161 5.38704 5.40811 5.46461 5.60108 5.61953 5.63742 5.67085 5.76376 5.77786 5.84435 6.15519 6.45197 6.76642 7.20622 7.40268 7.89655 8.43212 9.22285 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013044 B = 0.003847 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.024635 B = 7277.464716 C = 8442.999597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.077 4.077 4 C -0.126 4.126 5 C -0.122 4.122 6 C -0.133 4.133 7 C -0.130 4.130 8 C -0.074 4.074 9 C -0.103 4.103 10 C 0.512 3.488 11 O -0.586 6.586 12 N -0.696 5.696 13 C 0.141 3.859 14 C 0.161 3.839 15 H 0.034 0.966 16 C -0.123 4.123 17 C -0.102 4.102 18 C -0.136 4.136 19 C 0.178 3.822 20 N -0.601 5.601 21 C -0.235 4.235 22 H 0.059 0.941 23 C -0.031 4.031 24 N -0.923 5.923 25 Si 0.935 3.065 26 H -0.275 1.275 27 H -0.294 1.294 28 H -0.293 1.293 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.411 0.589 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.043 0.957 49 H 0.002 0.998 50 H 0.049 0.951 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 -3.564 -13.587 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.077 4.077 4 C -0.143 4.143 5 C -0.140 4.140 6 C -0.151 4.151 7 C -0.149 4.149 8 C -0.075 4.075 9 C -0.143 4.143 10 C 0.299 3.701 11 O -0.468 6.468 12 N -0.346 5.346 13 C 0.017 3.983 14 C 0.055 3.945 15 H 0.052 0.948 16 C -0.162 4.162 17 C -0.140 4.140 18 C -0.175 4.175 19 C 0.053 3.947 20 N -0.326 5.326 21 C -0.365 4.365 22 H 0.077 0.923 23 C -0.228 4.228 24 N -0.569 5.569 25 Si 0.765 3.235 26 H -0.201 1.201 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.138 0.862 40 H 0.248 0.752 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.062 0.938 49 H 0.020 0.980 50 H 0.067 0.933 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.017 -3.512 -13.926 14.362 hybrid contribution -0.307 1.477 0.944 1.780 sum -0.324 -2.035 -12.981 13.144 Atomic orbital electron populations 1.21749 0.93311 1.02644 1.02299 1.20560 0.97129 0.91888 1.02694 1.19934 0.98626 0.96490 0.92645 1.21299 0.99749 0.95602 0.97692 1.21436 0.99118 0.94804 0.98623 1.21326 1.00592 1.00883 0.92299 1.21190 0.99685 0.95126 0.98862 1.19285 1.00306 0.94257 0.93607 1.20722 0.97385 1.00239 0.95917 1.20716 0.89424 0.79376 0.80556 1.90628 1.32379 1.65096 1.58649 1.46041 1.17459 1.48715 1.22409 1.21201 0.88550 0.93900 0.94628 1.20870 0.95654 0.90288 0.87684 0.94840 1.21899 0.97558 0.99208 0.97553 1.21344 1.01332 0.96807 0.94503 1.22058 0.99129 0.97671 0.98660 1.20575 0.92654 0.96035 0.85455 1.44252 1.81777 1.02625 1.03923 1.19140 1.14587 0.85466 1.17355 0.92306 1.25463 0.95937 1.00177 1.01177 1.70099 1.18147 1.34089 1.34609 0.85851 0.76423 0.83459 0.77789 1.20096 1.22049 1.21976 0.93031 0.91656 0.91029 0.92780 0.89923 0.83849 0.83410 0.84441 0.87177 0.88560 0.86232 0.75215 0.91138 0.94170 0.90001 0.93027 0.92304 0.90787 0.91696 0.93769 0.97998 0.93295 0.94264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.72 71.98 0.70 -1.99 16 2 C -0.09 -1.99 5.38 29.85 0.16 -1.83 16 3 C -0.08 -2.09 5.13 -19.86 -0.10 -2.19 16 4 C -0.13 -2.93 9.68 22.27 0.22 -2.72 16 5 C -0.12 -2.73 10.05 22.27 0.22 -2.50 16 6 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 7 C -0.13 -4.02 9.68 22.27 0.22 -3.81 16 8 C -0.07 -2.31 4.37 -19.87 -0.09 -2.39 16 9 C -0.10 -3.28 5.16 29.10 0.15 -3.13 16 10 C 0.51 19.37 7.03 87.66 0.62 19.99 16 11 O -0.59 -25.60 16.03 -3.03 -0.05 -25.65 16 12 N -0.70 -26.40 3.85 -463.06 -1.78 -28.19 16 13 C 0.14 5.29 4.43 86.38 0.38 5.67 16 14 C 0.16 6.00 3.00 44.97 0.13 6.13 16 15 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 16 C -0.12 -3.82 5.37 30.67 0.16 -3.65 16 17 C -0.10 -3.03 5.88 30.62 0.18 -2.85 16 18 C -0.14 -4.83 6.08 30.67 0.19 -4.65 16 19 C 0.18 8.02 5.26 86.36 0.45 8.47 16 20 N -0.60 -27.26 2.98 -675.13 -2.01 -29.27 16 21 C -0.23 -11.73 7.00 84.03 0.59 -11.14 16 22 H 0.06 3.06 5.85 -2.91 -0.02 3.04 16 23 C -0.03 -1.61 4.97 84.86 0.42 -1.19 16 24 N -0.92 -50.52 11.23 21.65 0.24 -50.27 16 25 Si 0.93 43.49 29.58 68.60 2.03 45.52 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 29 H 0.05 1.03 6.77 -2.39 -0.02 1.02 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.47 6.43 -2.38 -0.02 1.45 16 33 H 0.08 1.67 8.05 -2.38 -0.02 1.65 16 34 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 37 H 0.11 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.10 3.14 8.05 -2.39 -0.02 3.12 16 39 H 0.12 3.23 5.60 -2.39 -0.01 3.21 16 40 H 0.41 16.19 7.43 -92.71 -0.69 15.50 16 41 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.04 1.70 7.40 -2.39 -0.02 1.68 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 49 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 50 H 0.05 2.54 6.20 -2.39 -0.01 2.52 16 51 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -62.58 395.14 3.48 -59.10 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 0.22 Total: 35.72 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 4.83 Total: -6.97 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -3.55 Total: -107.73 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -62.58 3.48 -59.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752820343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.439 kcal (2) G-P(sol) polarization free energy of solvation -62.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds