Wall clock time and date at job start Tue Mar 31 2020 16:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47485 * 2 1 4 4 C 1.38237 * 120.00174 * 89.99497 * 3 2 1 5 5 C 1.38235 * 120.00208 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99559 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99815 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47019 * 89.99723 * 7 6 5 9 9 C 1.50698 * 109.46828 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00382 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00074 * 180.02562 * 9 8 7 12 12 C 1.47028 * 125.64376 * 0.02562 * 11 9 8 13 13 C 1.54323 * 107.26890 * 181.01498 * 12 11 9 14 14 C 1.55158 * 102.94316 * 22.19439 * 13 12 11 15 15 H 1.08996 * 111.00437 * 82.61034 * 14 13 12 16 16 C 1.53001 * 111.00640 * 206.42094 * 14 13 12 17 17 N 1.46490 * 109.47264 * 293.54603 * 16 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.47422 * 125.65211 * 179.97438 * 11 9 8 27 27 C 1.38240 * 120.00591 * 0.24904 * 6 5 4 28 28 C 1.38232 * 119.99592 * 270.02318 * 3 2 1 29 29 H 1.09002 * 109.47128 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46970 * 300.00599 * 1 2 3 31 31 H 1.08998 * 109.46471 * 59.99867 * 1 2 3 32 32 H 1.08997 * 109.46970 * 239.99401 * 2 1 3 33 33 H 1.09007 * 109.46639 * 120.00236 * 2 1 3 34 34 H 1.08003 * 119.99472 * 0.02562 * 4 3 2 35 35 H 1.07998 * 120.00257 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.46706 * 329.99804 * 7 6 5 37 37 H 1.09000 * 109.46973 * 209.99590 * 7 6 5 38 38 H 1.09002 * 109.46920 * 60.00094 * 8 7 6 39 39 H 1.08997 * 109.47332 * 300.00256 * 8 7 6 40 40 H 1.08999 * 109.87792 * 61.60171 * 12 11 9 41 41 H 1.08993 * 110.01543 * 300.50340 * 12 11 9 42 42 H 1.09000 * 110.72598 * 263.83374 * 13 12 11 43 43 H 1.08998 * 110.72391 * 140.55728 * 13 12 11 44 44 H 1.09003 * 109.46836 * 173.54310 * 16 14 13 45 45 H 1.08999 * 109.47071 * 53.55349 * 16 14 13 46 46 H 0.97000 * 120.00577 * 0.02562 * 17 16 14 47 47 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 48 48 H 1.08997 * 110.36669 * 37.07965 * 26 11 9 49 49 H 1.08994 * 110.36588 * 274.75708 * 26 11 9 50 50 H 1.07996 * 120.00219 * 179.72818 * 27 6 5 51 51 H 1.07998 * 120.00612 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7232 3.3759 1.1972 6 6 2.9527 4.0278 0.0000 7 6 3.4540 5.4490 -0.0001 8 6 4.9840 5.4501 -0.0005 9 6 5.4853 6.8712 0.0000 10 8 4.6965 7.7926 0.0003 11 7 6.8102 7.1185 -0.0008 12 6 7.8717 6.1012 -0.0028 13 6 9.2220 6.8479 0.0231 14 6 8.8418 8.2333 0.6093 15 1 8.7950 8.1974 1.6977 16 6 9.8184 9.3138 0.1406 17 7 11.1429 9.0553 0.7105 18 6 12.1859 9.8966 0.4280 19 1 12.0318 10.7508 -0.2145 20 6 13.4412 9.6514 0.9675 21 7 13.6290 8.6100 1.7503 22 14 14.8637 10.7994 0.5827 23 1 15.5680 10.3237 -0.6351 24 1 14.3440 12.1708 0.3503 25 1 15.8100 10.8158 1.7271 26 6 7.4351 8.4537 -0.0009 27 6 2.7169 3.3780 -1.1972 28 6 2.2624 2.0725 -1.1972 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.0831 1.5632 2.1324 35 1 2.9028 3.8852 2.1324 36 1 3.0906 5.9625 0.8901 37 1 3.0901 5.9626 -0.8899 38 1 5.3474 4.9365 -0.8907 39 1 5.3480 4.9364 0.8892 40 1 7.8012 5.4938 -0.9051 41 1 7.7820 5.4668 0.8790 42 1 9.6241 6.9528 -0.9846 43 1 9.9331 6.3366 0.6719 44 1 9.4651 10.2907 0.4708 45 1 9.8817 9.2991 -0.9474 46 1 11.2815 8.2879 1.2873 47 1 12.8902 8.0141 1.9504 48 1 6.8579 9.1427 0.6157 49 1 7.5185 8.8334 -1.0191 50 1 2.8921 3.8889 -2.1325 51 1 2.0824 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752971860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:33 Heat of formation + Delta-G solvation = -24.159576 kcal Electronic energy + Delta-G solvation = -26774.119697 eV Core-core repulsion = 23058.333382 eV Total energy + Delta-G solvation = -3715.786315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29021 -39.72534 -37.81039 -35.44689 -34.94765 -32.92693 -32.29033 -31.23239 -30.20320 -29.45914 -28.70154 -25.89273 -24.56678 -23.23754 -23.04697 -22.65750 -22.38278 -20.72372 -20.12555 -19.14554 -17.44086 -17.20705 -16.56702 -16.27534 -16.08191 -15.57186 -15.33012 -14.91439 -14.39457 -14.19637 -14.05759 -13.89524 -13.76554 -13.67866 -13.46985 -13.42838 -13.18480 -13.01505 -12.56622 -12.50735 -12.46120 -12.13654 -11.83474 -11.76626 -11.75072 -11.33220 -11.13764 -11.07281 -11.02518 -10.80916 -10.68857 -10.50913 -10.39753 -10.02532 -9.92438 -9.22330 -9.20023 -8.90279 -8.80649 -8.68267 -7.02829 -6.12715 -3.12443 1.00031 1.10178 2.55899 2.90950 3.43277 3.51056 3.55778 3.69844 4.22945 4.39371 4.42726 4.59768 4.66380 4.67293 4.69992 4.72103 4.79440 4.86894 4.92800 4.98719 5.02285 5.11423 5.18725 5.19984 5.23539 5.27291 5.42333 5.46892 5.51711 5.55431 5.56889 5.60816 5.67527 5.77591 5.80916 5.81776 5.90259 5.90983 5.93498 5.95011 6.11874 6.14040 6.23687 6.29972 6.34618 6.35675 6.62003 6.70713 6.73565 7.46726 7.79620 8.08514 8.73872 9.20503 10.06862 10.21636 11.35988 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.001624 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.082412 B =17233.085995 C =17785.056541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.088 4.088 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.085 4.085 7 C -0.065 4.065 8 C -0.129 4.129 9 C 0.526 3.474 10 O -0.546 6.546 11 N -0.617 5.617 12 C 0.099 3.901 13 C -0.121 4.121 14 C -0.107 4.107 15 H 0.083 0.917 16 C 0.170 3.830 17 N -0.742 5.742 18 C -0.332 4.332 19 H 0.065 0.935 20 C -0.045 4.045 21 N -0.944 5.944 22 Si 1.083 2.917 23 H -0.295 1.295 24 H -0.295 1.295 25 H -0.288 1.288 26 C 0.113 3.887 27 C -0.113 4.113 28 C -0.116 4.116 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.023 0.977 45 H 0.023 0.977 46 H 0.367 0.633 47 H 0.254 0.746 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.122 0.878 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.459 -17.348 -4.351 31.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.085 4.085 7 C -0.103 4.103 8 C -0.169 4.169 9 C 0.315 3.685 10 O -0.424 6.424 11 N -0.351 5.351 12 C -0.024 4.024 13 C -0.159 4.159 14 C -0.127 4.127 15 H 0.101 0.899 16 C 0.042 3.958 17 N -0.388 5.388 18 C -0.463 4.463 19 H 0.083 0.917 20 C -0.242 4.242 21 N -0.590 5.590 22 Si 0.914 3.086 23 H -0.223 1.223 24 H -0.221 1.221 25 H -0.214 1.214 26 C -0.010 4.010 27 C -0.131 4.131 28 C -0.134 4.134 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.041 0.959 45 H 0.041 0.959 46 H 0.200 0.800 47 H 0.066 0.934 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.140 0.860 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.384 -16.379 -4.228 29.677 hybrid contribution -1.465 -0.561 -0.138 1.575 sum -25.849 -16.940 -4.366 31.212 Atomic orbital electron populations 1.21749 0.94728 1.01688 1.02242 1.20546 0.96184 0.92723 1.02831 1.19898 0.99377 0.96267 0.93256 1.21017 1.00003 0.94883 0.97513 1.21073 0.99488 0.94782 0.97699 1.19901 0.99349 0.96003 0.93239 1.20339 0.93181 0.92205 1.04537 1.21621 0.96724 0.93874 1.04646 1.20344 0.80520 0.91596 0.76038 1.90703 1.54332 1.46778 1.50556 1.48586 1.05044 1.08634 1.72876 1.22133 0.87540 0.91277 1.01420 1.22642 0.94890 0.95511 1.02879 1.22587 0.93591 0.95936 1.00578 0.89897 1.20479 0.85101 0.94228 0.96004 1.42305 1.05188 1.32157 1.59112 1.20071 0.90755 1.07114 1.28362 0.91698 1.25778 0.98777 1.01442 0.98237 1.70863 1.33862 1.15607 1.38683 0.83193 0.75363 0.74180 0.75897 1.22306 1.22136 1.21370 1.22235 0.92998 0.84436 1.01293 1.21070 0.99565 0.94763 0.97670 1.21012 1.00078 0.94852 0.97500 0.92408 0.92561 0.92565 0.91082 0.91074 0.86207 0.86008 0.90151 0.90168 0.88865 0.88840 0.91468 0.91422 0.90143 0.89724 0.95911 0.95888 0.79996 0.93448 0.90433 0.91189 0.86034 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.90 37.16 0.37 -0.38 16 2 C -0.09 -0.48 6.06 -27.88 -0.17 -0.65 16 3 C -0.09 -0.66 5.13 -104.63 -0.54 -1.20 16 4 C -0.12 -0.90 9.70 -39.58 -0.38 -1.28 16 5 C -0.11 -0.93 9.70 -39.58 -0.38 -1.32 16 6 C -0.08 -0.74 5.13 -104.62 -0.54 -1.28 16 7 C -0.06 -0.61 4.64 -27.88 -0.13 -0.74 16 8 C -0.13 -1.21 4.87 -27.88 -0.14 -1.34 16 9 C 0.53 6.93 7.85 -10.99 -0.09 6.84 16 10 O -0.55 -9.10 16.24 5.55 0.09 -9.01 16 11 N -0.62 -8.01 3.33 -170.52 -0.57 -8.58 16 12 C 0.10 1.09 6.49 -3.06 -0.02 1.07 16 13 C -0.12 -1.65 6.13 -24.90 -0.15 -1.80 16 14 C -0.11 -1.66 3.10 -88.47 -0.27 -1.94 16 15 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.17 3.34 5.71 -4.05 -0.02 3.32 16 17 N -0.74 -18.30 5.45 -59.91 -0.33 -18.62 16 18 C -0.33 -9.34 9.99 -15.06 -0.15 -9.49 16 19 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.04 -1.30 5.50 -17.43 -0.10 -1.39 16 21 N -0.94 -28.90 13.70 55.49 0.76 -28.14 16 22 Si 1.08 25.85 29.92 -169.99 -5.09 20.77 16 23 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.11 1.62 6.38 -2.53 -0.02 1.60 16 27 C -0.11 -0.92 9.70 -39.58 -0.38 -1.31 16 28 C -0.12 -0.89 9.70 -39.58 -0.38 -1.27 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.07 0.36 8.09 -51.92 -0.42 -0.06 16 34 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 37 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.15 8.01 -51.93 -0.42 0.74 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.46 8.11 -51.93 -0.42 0.04 16 46 H 0.37 9.13 6.37 -40.82 -0.26 8.87 16 47 H 0.25 7.61 6.77 -40.82 -0.28 7.33 16 48 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 49 H 0.07 0.99 8.04 -51.93 -0.42 0.58 16 50 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 51 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 414.70 15.07 6.25 6.25 Total: -1.00 -33.50 414.70 -11.38 -44.88 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -9.01 Total: 5.00 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -3.50 Total: -12.54 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.13 Total: -55.34 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.09 Total: 20.77 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.50 -11.38 -44.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752971860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.720 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds