Wall clock time and date at job start Tue Mar 31 2020 16:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47485 * 2 1 4 4 C 1.38237 * 120.00174 * 89.99497 * 3 2 1 5 5 C 1.38235 * 120.00208 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99559 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.99815 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47019 * 89.99723 * 7 6 5 9 9 C 1.50698 * 109.46828 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00382 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00074 * 180.02562 * 9 8 7 12 12 C 1.47028 * 125.64376 * 0.02562 * 11 9 8 13 13 C 1.54323 * 107.26890 * 181.01498 * 12 11 9 14 14 C 1.55158 * 102.94316 * 22.19439 * 13 12 11 15 15 H 1.08996 * 111.00437 * 82.61034 * 14 13 12 16 16 C 1.53001 * 111.00640 * 206.42094 * 14 13 12 17 17 N 1.46490 * 109.47264 * 293.54603 * 16 14 13 18 18 C 1.36935 * 120.00121 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.47422 * 125.65211 * 179.97438 * 11 9 8 27 27 C 1.38240 * 120.00591 * 0.24904 * 6 5 4 28 28 C 1.38232 * 119.99592 * 270.02318 * 3 2 1 29 29 H 1.09002 * 109.47128 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46970 * 300.00599 * 1 2 3 31 31 H 1.08998 * 109.46471 * 59.99867 * 1 2 3 32 32 H 1.08997 * 109.46970 * 239.99401 * 2 1 3 33 33 H 1.09007 * 109.46639 * 120.00236 * 2 1 3 34 34 H 1.08003 * 119.99472 * 0.02562 * 4 3 2 35 35 H 1.07998 * 120.00257 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.46706 * 329.99804 * 7 6 5 37 37 H 1.09000 * 109.46973 * 209.99590 * 7 6 5 38 38 H 1.09002 * 109.46920 * 60.00094 * 8 7 6 39 39 H 1.08997 * 109.47332 * 300.00256 * 8 7 6 40 40 H 1.08999 * 109.87792 * 61.60171 * 12 11 9 41 41 H 1.08993 * 110.01543 * 300.50340 * 12 11 9 42 42 H 1.09000 * 110.72598 * 263.83374 * 13 12 11 43 43 H 1.08998 * 110.72391 * 140.55728 * 13 12 11 44 44 H 1.09003 * 109.46836 * 173.54310 * 16 14 13 45 45 H 1.08999 * 109.47071 * 53.55349 * 16 14 13 46 46 H 0.97000 * 120.00577 * 0.02562 * 17 16 14 47 47 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 48 48 H 1.08997 * 110.36669 * 37.07965 * 26 11 9 49 49 H 1.08994 * 110.36588 * 274.75708 * 26 11 9 50 50 H 1.07996 * 120.00219 * 179.72818 * 27 6 5 51 51 H 1.07998 * 120.00612 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7232 3.3759 1.1972 6 6 2.9527 4.0278 0.0000 7 6 3.4540 5.4490 -0.0001 8 6 4.9840 5.4501 -0.0005 9 6 5.4853 6.8712 0.0000 10 8 4.6965 7.7926 0.0003 11 7 6.8102 7.1185 -0.0008 12 6 7.8717 6.1012 -0.0028 13 6 9.2220 6.8479 0.0231 14 6 8.8418 8.2333 0.6093 15 1 8.7950 8.1974 1.6977 16 6 9.8184 9.3138 0.1406 17 7 11.1429 9.0553 0.7105 18 6 12.1859 9.8966 0.4280 19 1 12.0318 10.7508 -0.2145 20 6 13.4412 9.6514 0.9675 21 7 13.6290 8.6100 1.7503 22 14 14.8637 10.7994 0.5827 23 1 15.5680 10.3237 -0.6351 24 1 14.3440 12.1708 0.3503 25 1 15.8100 10.8158 1.7271 26 6 7.4351 8.4537 -0.0009 27 6 2.7169 3.3780 -1.1972 28 6 2.2624 2.0725 -1.1972 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.0831 1.5632 2.1324 35 1 2.9028 3.8852 2.1324 36 1 3.0906 5.9625 0.8901 37 1 3.0901 5.9626 -0.8899 38 1 5.3474 4.9365 -0.8907 39 1 5.3480 4.9364 0.8892 40 1 7.8012 5.4938 -0.9051 41 1 7.7820 5.4668 0.8790 42 1 9.6241 6.9528 -0.9846 43 1 9.9331 6.3366 0.6719 44 1 9.4651 10.2907 0.4708 45 1 9.8817 9.2991 -0.9474 46 1 11.2815 8.2879 1.2873 47 1 12.8902 8.0141 1.9504 48 1 6.8579 9.1427 0.6157 49 1 7.5185 8.8334 -1.0191 50 1 2.8921 3.8889 -2.1325 51 1 2.0824 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752971860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:32 Heat of formation + Delta-G solvation = -41.446728 kcal Electronic energy + Delta-G solvation = -26774.869324 eV Core-core repulsion = 23058.333382 eV Total energy + Delta-G solvation = -3716.535942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28364 -40.38775 -38.99890 -36.75811 -36.04815 -34.13841 -33.36588 -31.79482 -31.74874 -30.43432 -29.65214 -27.14277 -25.78261 -24.54696 -24.04805 -23.61225 -23.16044 -21.46044 -21.28461 -20.15076 -19.37508 -18.32373 -17.68232 -16.93495 -16.87766 -16.48287 -16.32226 -16.09265 -15.76653 -15.57369 -15.11770 -15.03586 -14.63497 -14.59390 -14.39498 -14.14231 -14.10271 -13.96006 -13.83061 -13.60317 -13.23847 -13.07493 -12.77512 -12.71764 -12.60900 -12.39288 -12.32396 -12.20526 -11.91352 -11.88855 -11.86342 -11.72078 -11.65852 -11.61326 -11.27797 -10.98874 -10.93528 -9.80100 -9.74543 -9.39688 -9.11542 -8.40209 -5.34141 0.41141 0.52436 1.54471 1.59491 1.69687 1.84121 1.90204 2.70747 2.84100 3.26140 3.39742 3.55918 3.58044 3.77495 3.87942 3.90110 4.03975 4.08070 4.11208 4.17665 4.22530 4.26067 4.31111 4.35871 4.45450 4.51909 4.53195 4.60000 4.62913 4.64409 4.71557 4.73051 4.77043 4.90656 4.92570 4.98493 5.07071 5.07713 5.09716 5.12355 5.17705 5.24356 5.25479 5.30829 5.38788 5.54986 5.58463 5.74475 5.76134 6.14550 6.45441 6.50665 7.05557 7.09260 7.99488 8.10149 9.12200 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.028886 B = 0.001624 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.082412 B =17233.085995 C =17785.056541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.125 4.125 5 C -0.122 4.122 6 C -0.094 4.094 7 C -0.058 4.058 8 C -0.118 4.118 9 C 0.523 3.477 10 O -0.587 6.587 11 N -0.619 5.619 12 C 0.105 3.895 13 C -0.118 4.118 14 C -0.098 4.098 15 H 0.077 0.923 16 C 0.170 3.830 17 N -0.752 5.752 18 C -0.338 4.338 19 H 0.064 0.936 20 C -0.100 4.100 21 N -0.973 5.973 22 Si 1.129 2.871 23 H -0.283 1.283 24 H -0.276 1.276 25 H -0.292 1.292 26 C 0.119 3.881 27 C -0.121 4.121 28 C -0.124 4.124 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.016 0.984 45 H 0.025 0.975 46 H 0.364 0.636 47 H 0.246 0.754 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.130 0.870 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.018 -18.896 -5.071 32.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.143 4.143 5 C -0.140 4.140 6 C -0.094 4.094 7 C -0.096 4.096 8 C -0.157 4.157 9 C 0.314 3.686 10 O -0.468 6.468 11 N -0.352 5.352 12 C -0.016 4.016 13 C -0.156 4.156 14 C -0.117 4.117 15 H 0.095 0.905 16 C 0.043 3.957 17 N -0.397 5.397 18 C -0.469 4.469 19 H 0.082 0.918 20 C -0.292 4.292 21 N -0.621 5.621 22 Si 0.954 3.046 23 H -0.210 1.210 24 H -0.201 1.201 25 H -0.219 1.219 26 C -0.005 4.005 27 C -0.139 4.139 28 C -0.142 4.142 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.034 0.966 45 H 0.043 0.957 46 H 0.196 0.804 47 H 0.056 0.944 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.148 0.852 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.977 -17.942 -4.968 31.152 hybrid contribution -1.371 -0.072 0.070 1.375 sum -26.347 -18.015 -4.898 32.291 Atomic orbital electron populations 1.21736 0.94412 1.02311 1.01794 1.20584 0.96379 0.91688 1.03545 1.20181 0.98801 0.97164 0.93148 1.21245 0.99864 0.94827 0.98341 1.21232 0.99662 0.95204 0.97897 1.19852 1.00279 0.95550 0.93734 1.20222 0.93282 0.92600 1.03492 1.21625 0.96519 0.91243 1.06317 1.21031 0.79993 0.92735 0.74866 1.90686 1.55286 1.48365 1.52447 1.48661 1.05562 1.08360 1.72593 1.22214 0.85011 0.90608 1.03808 1.22586 0.96500 0.94466 1.02064 1.22359 0.93302 0.95867 1.00219 0.90486 1.20569 0.83965 0.95440 0.95737 1.42456 1.06346 1.31620 1.59268 1.20412 0.91789 1.07228 1.27519 0.91786 1.27164 1.01640 1.02277 0.98101 1.70966 1.33781 1.16805 1.40566 0.82599 0.72721 0.73442 0.75841 1.20985 1.20111 1.21878 1.22041 0.92055 0.85432 1.00943 1.21241 0.99606 0.95158 0.97876 1.21252 0.99849 0.94798 0.98318 0.91270 0.93046 0.92976 0.90334 0.90419 0.84891 0.85394 0.91344 0.91153 0.86877 0.87129 0.88841 0.89282 0.90852 0.90134 0.96613 0.95735 0.80402 0.94386 0.91447 0.91116 0.85205 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.90 71.98 0.71 -0.53 16 2 C -0.08 -0.78 6.06 29.85 0.18 -0.60 16 3 C -0.09 -1.23 5.13 -19.87 -0.10 -1.34 16 4 C -0.12 -1.74 9.70 22.27 0.22 -1.52 16 5 C -0.12 -1.87 9.70 22.27 0.22 -1.66 16 6 C -0.09 -1.52 5.13 -19.86 -0.10 -1.62 16 7 C -0.06 -1.04 4.64 29.85 0.14 -0.90 16 8 C -0.12 -1.95 4.87 29.85 0.15 -1.81 16 9 C 0.52 13.12 7.85 87.66 0.69 13.81 16 10 O -0.59 -19.55 16.24 -3.04 -0.05 -19.60 16 11 N -0.62 -15.06 3.33 -811.80 -2.70 -17.76 16 12 C 0.11 2.04 6.49 86.73 0.56 2.60 16 13 C -0.12 -3.07 6.13 31.78 0.19 -2.87 16 14 C -0.10 -3.00 3.10 -9.40 -0.03 -3.03 16 15 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 16 C 0.17 6.70 5.71 86.38 0.49 7.20 16 17 N -0.75 -37.38 5.45 -343.47 -1.87 -39.26 16 18 C -0.34 -19.04 9.99 84.03 0.84 -18.20 16 19 H 0.06 3.55 7.83 -2.91 -0.02 3.52 16 20 C -0.10 -5.78 5.50 84.86 0.47 -5.31 16 21 N -0.97 -60.02 13.70 21.65 0.30 -59.72 16 22 Si 1.13 51.68 29.92 68.60 2.05 53.74 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 26 C 0.12 3.34 6.38 86.86 0.55 3.89 16 27 C -0.12 -1.81 9.70 22.27 0.22 -1.59 16 28 C -0.12 -1.69 9.70 22.27 0.22 -1.47 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 33 H 0.08 0.62 8.09 -2.38 -0.02 0.60 16 34 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.07 1.37 8.04 -2.39 -0.02 1.35 16 37 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 38 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.07 2.02 8.01 -2.39 -0.02 2.00 16 43 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.02 0.98 8.11 -2.39 -0.02 0.96 16 46 H 0.36 18.38 6.37 -92.71 -0.59 17.79 16 47 H 0.25 14.97 6.77 -92.71 -0.63 14.34 16 48 H 0.07 2.03 8.04 -2.39 -0.02 2.01 16 49 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 50 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 51 H 0.13 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -71.95 414.70 3.77 -68.18 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.44 Total: 29.38 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 5.61 Total: -14.96 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -4.28 Total: -116.74 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.05 Total: -19.60 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.05 Total: 53.74 kcal Total: -71.95 3.77 -68.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752971860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.737 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds