Wall clock time and date at job start Tue Mar 31 2020 16:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47175 * 2 1 4 4 C 1.38262 * 119.99774 * 89.99555 * 3 2 1 5 5 C 1.38214 * 120.00033 * 179.71892 * 4 3 2 6 6 C 1.38258 * 119.99736 * 0.28269 * 5 4 3 7 7 C 1.38218 * 120.00315 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00109 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46883 * 90.00215 * 8 7 6 10 10 O 1.21281 * 120.00328 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99975 * 179.97438 * 9 8 7 12 12 C 1.47026 * 125.64688 * 359.69193 * 11 9 8 13 13 C 1.54317 * 107.27768 * 180.96512 * 12 11 9 14 14 C 1.55165 * 102.86071 * 22.52562 * 13 12 11 15 15 H 1.09007 * 111.03216 * 82.38964 * 14 13 12 16 16 C 1.52996 * 111.00584 * 206.22719 * 14 13 12 17 17 N 1.46502 * 109.47206 * 287.20108 * 16 14 13 18 18 C 1.46500 * 120.00481 * 89.99361 * 17 16 14 19 19 C 1.36940 * 119.99775 * 269.99637 * 17 16 14 20 20 H 1.08002 * 120.00107 * 142.10229 * 19 17 16 21 21 C 1.38816 * 120.00061 * 322.11332 * 19 17 16 22 22 N 1.31615 * 120.00423 * 157.12326 * 21 19 17 23 23 Si 1.86798 * 119.99644 * 337.11739 * 21 19 17 24 24 H 1.48496 * 109.47139 * 95.74664 * 23 21 19 25 25 H 1.48500 * 109.47176 * 215.75037 * 23 21 19 26 26 H 1.48505 * 109.47272 * 335.74709 * 23 21 19 27 27 C 1.47422 * 125.65357 * 179.97438 * 11 9 8 28 28 C 1.38209 * 120.00257 * 270.18683 * 3 2 1 29 29 H 1.09007 * 109.46977 * 59.99934 * 1 2 3 30 30 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47769 * 300.00283 * 1 2 3 32 32 H 1.08997 * 109.47037 * 239.99591 * 2 1 3 33 33 H 1.09002 * 109.46576 * 119.99828 * 2 1 3 34 34 H 1.07997 * 120.00061 * 0.02562 * 4 3 2 35 35 H 1.07998 * 120.00472 * 180.25779 * 5 4 3 36 36 H 1.07997 * 120.00062 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47179 * 209.99780 * 8 7 6 38 38 H 1.08994 * 109.46890 * 329.99761 * 8 7 6 39 39 H 1.09002 * 109.88544 * 300.51041 * 12 11 9 40 40 H 1.09004 * 109.88249 * 61.67882 * 12 11 9 41 41 H 1.08999 * 110.92741 * 264.11715 * 13 12 11 42 42 H 1.08999 * 110.74397 * 140.85271 * 13 12 11 43 43 H 1.09001 * 109.46747 * 47.19490 * 16 14 13 44 44 H 1.08995 * 109.47383 * 167.19953 * 16 14 13 45 45 H 1.09001 * 109.46422 * 89.95364 * 18 17 16 46 46 H 1.08997 * 109.47163 * 209.95174 * 18 17 16 47 47 H 1.09001 * 109.47261 * 329.95983 * 18 17 16 48 48 H 0.96991 * 120.00398 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.37211 * 274.67822 * 27 11 9 50 50 H 1.09008 * 110.36122 * 36.99998 * 27 11 9 51 51 H 1.08001 * 120.00202 * 0.04739 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7289 3.3736 1.1975 6 6 2.9594 4.0254 0.0001 7 6 2.7241 3.3757 -1.1969 8 6 2.9748 4.0863 -2.5020 9 6 4.3963 3.8448 -2.9404 10 8 5.1334 3.1632 -2.2599 11 7 4.8485 4.3863 -4.0887 12 6 4.0643 5.2235 -5.0084 13 6 4.9846 5.5910 -6.1913 14 6 6.0558 4.4689 -6.1571 15 1 5.6967 3.5698 -6.6580 16 6 7.3717 4.9479 -6.7732 17 7 7.2228 5.0465 -8.2273 18 6 6.7665 6.2997 -8.8336 19 6 7.5101 3.9673 -9.0197 20 1 6.9026 3.7577 -9.8877 21 6 8.5820 3.1424 -8.7072 22 7 8.6097 1.9032 -9.1497 23 14 9.9852 3.7914 -7.6589 24 1 9.7590 3.4141 -6.2406 25 1 11.2662 3.2056 -8.1288 26 1 10.0459 5.2708 -7.7738 27 6 6.2096 4.2325 -4.6337 28 6 2.2590 2.0736 -1.1969 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.0830 1.5633 2.1327 35 1 2.9128 3.8814 2.1328 36 1 3.3234 5.0422 0.0001 37 1 2.2910 3.7052 -3.2604 38 1 2.8118 5.1559 -2.3703 39 1 3.1985 4.6679 -5.3686 40 1 3.7395 6.1305 -4.4984 41 1 5.4442 6.5674 -6.0384 42 1 4.4329 5.5688 -7.1311 43 1 7.6281 5.9264 -6.3670 44 1 8.1637 4.2374 -6.5365 45 1 7.6278 6.9276 -9.0615 46 1 6.2225 6.0817 -9.7526 47 1 6.1100 6.8221 -8.1378 48 1 9.3588 1.3270 -8.9316 49 1 6.8783 4.9759 -4.1999 50 1 6.5836 3.2267 -4.4418 51 1 2.0754 1.5659 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753350865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:56 Heat of formation + Delta-G solvation = 3.465320 kcal Electronic energy + Delta-G solvation = -28029.788487 eV Core-core repulsion = 24315.200077 eV Total energy + Delta-G solvation = -3714.588409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.27547 -39.31985 -37.61804 -35.54718 -34.60996 -32.70059 -31.97192 -31.12796 -29.70243 -29.34570 -27.95507 -26.37516 -25.25760 -24.13916 -23.08842 -22.13622 -21.23140 -20.66268 -20.04972 -19.01889 -17.09767 -16.85803 -16.66056 -16.09905 -15.78523 -15.39055 -15.17054 -14.87799 -14.55898 -14.09612 -13.93244 -13.69224 -13.49215 -13.33239 -13.20859 -13.10379 -12.86754 -12.70753 -12.38274 -12.31219 -12.21940 -11.96618 -11.90868 -11.70678 -11.51735 -11.45669 -11.17661 -11.01905 -10.94197 -10.82988 -10.75073 -10.30752 -10.24892 -9.85802 -9.75617 -9.53084 -8.89217 -8.72105 -8.53712 -8.50548 -6.83935 -6.02311 -3.43665 1.20946 1.29488 2.70936 3.06610 3.30658 3.46336 3.50835 3.67099 4.45808 4.50370 4.51960 4.60276 4.68546 4.81209 4.88659 4.93509 4.96714 5.02025 5.11101 5.14091 5.25269 5.26553 5.30386 5.36254 5.39319 5.46219 5.51912 5.56867 5.65856 5.66659 5.78995 5.87223 5.95051 5.98652 5.99883 6.05315 6.11545 6.19883 6.24250 6.30394 6.33452 6.42343 6.44737 6.49970 6.58811 6.66986 6.70760 6.89316 6.91173 7.63388 8.03242 8.25569 8.35459 8.96118 9.68741 10.09531 11.13339 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017599 B = 0.002423 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.661395 B =11554.877014 C =11993.353003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.081 4.081 4 C -0.120 4.120 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.060 4.060 8 C -0.098 4.098 9 C 0.526 3.474 10 O -0.535 6.535 11 N -0.617 5.617 12 C 0.100 3.900 13 C -0.119 4.119 14 C -0.113 4.113 15 H 0.093 0.907 16 C 0.150 3.850 17 N -0.609 5.609 18 C 0.123 3.877 19 C -0.272 4.272 20 H 0.078 0.922 21 C 0.037 3.963 22 N -0.898 5.898 23 Si 0.875 3.125 24 H -0.284 1.284 25 H -0.301 1.301 26 H -0.270 1.270 27 C 0.107 3.893 28 C -0.102 4.102 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.041 0.959 44 H 0.056 0.944 45 H 0.006 0.994 46 H 0.041 0.959 47 H 0.031 0.969 48 H 0.264 0.736 49 H 0.063 0.937 50 H 0.076 0.924 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.045 5.118 17.903 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.138 4.138 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.060 4.060 8 C -0.138 4.138 9 C 0.314 3.686 10 O -0.412 6.412 11 N -0.351 5.351 12 C -0.023 4.023 13 C -0.157 4.157 14 C -0.135 4.135 15 H 0.111 0.889 16 C 0.024 3.976 17 N -0.333 5.333 18 C -0.022 4.022 19 C -0.400 4.400 20 H 0.096 0.904 21 C -0.164 4.164 22 N -0.539 5.539 23 Si 0.705 3.295 24 H -0.212 1.212 25 H -0.229 1.229 26 H -0.195 1.195 27 C -0.015 4.015 28 C -0.120 4.120 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.024 0.976 46 H 0.060 0.940 47 H 0.050 0.950 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.591 4.583 18.281 25.109 hybrid contribution 0.938 0.308 0.485 1.100 sum -15.653 4.890 18.766 24.922 Atomic orbital electron populations 1.21743 0.94751 1.01657 1.02133 1.20547 0.96094 0.92720 1.02987 1.19830 0.99156 0.96096 0.93066 1.20978 1.00504 0.95004 0.97361 1.21051 0.99663 0.95027 0.97781 1.20941 0.99875 1.00005 0.92010 1.19275 0.98691 0.94419 0.93621 1.20655 0.94744 1.02273 0.96089 1.20131 0.89235 0.79430 0.79762 1.90731 1.58362 1.38680 1.53387 1.48597 1.13926 1.50929 1.21675 1.22112 0.95168 0.93960 0.91073 1.22657 0.96972 0.99149 0.96945 1.23094 0.98541 0.99381 0.92490 0.88853 1.21060 0.93776 0.98069 0.84737 1.43994 1.78904 1.10098 1.00284 1.21129 0.96391 0.87891 0.96796 1.18762 1.09475 1.01867 1.09907 0.90443 1.25475 0.97462 0.95638 0.97811 1.69869 1.31449 1.04938 1.47610 0.86961 0.83093 0.79906 0.79579 1.21160 1.22851 1.19454 1.22367 0.82954 1.02117 0.94085 1.20854 0.99553 0.93891 0.97685 0.92531 0.92431 0.92654 0.90920 0.91076 0.86365 0.86175 0.86397 0.88061 0.88148 0.91543 0.91827 0.91056 0.89839 0.94048 0.92625 0.97621 0.94009 0.95009 0.92649 0.91830 0.90547 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.09 -0.74 6.06 -27.89 -0.17 -0.90 16 3 C -0.08 -0.87 5.13 -104.63 -0.54 -1.41 16 4 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 5 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 6 C -0.11 -1.23 9.70 -39.58 -0.38 -1.62 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.16 16 8 C -0.10 -1.04 5.02 -29.03 -0.15 -1.19 16 9 C 0.53 7.88 7.84 -10.99 -0.09 7.79 16 10 O -0.53 -10.26 16.29 5.56 0.09 -10.17 16 11 N -0.62 -8.94 3.33 -170.51 -0.57 -9.50 16 12 C 0.10 1.13 6.48 -3.07 -0.02 1.11 16 13 C -0.12 -1.59 5.03 -24.90 -0.13 -1.72 16 14 C -0.11 -1.98 3.25 -88.46 -0.29 -2.27 16 15 H 0.09 1.90 8.14 -51.92 -0.42 1.47 16 16 C 0.15 3.07 4.02 -4.04 -0.02 3.05 16 17 N -0.61 -13.84 2.44 -181.12 -0.44 -14.28 16 18 C 0.12 2.31 10.51 59.85 0.63 2.94 16 19 C -0.27 -7.40 9.90 -15.06 -0.15 -7.55 16 20 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 21 C 0.04 1.05 5.29 -17.43 -0.09 0.96 16 22 N -0.90 -27.19 13.97 55.49 0.78 -26.42 16 23 Si 0.87 22.10 25.09 -169.99 -4.26 17.83 16 24 H -0.28 -6.98 6.68 56.52 0.38 -6.60 16 25 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.11 1.80 6.38 -2.52 -0.02 1.78 16 28 C -0.10 -1.19 9.36 -39.58 -0.37 -1.56 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.89 7.58 -51.93 -0.39 0.50 16 42 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 43 H 0.04 0.76 7.90 -51.93 -0.41 0.35 16 44 H 0.06 1.29 3.36 -51.93 -0.17 1.11 16 45 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 46 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 47 H 0.03 0.49 6.41 -51.93 -0.33 0.16 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 50 H 0.08 1.43 8.04 -51.92 -0.42 1.02 16 51 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 405.38 15.07 6.11 6.11 Total: -1.00 -33.24 405.38 -9.84 -43.07 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.89 Total: -1.03 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.64 Total: -5.61 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.23 Total: -50.20 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.26 Total: 17.83 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.24 -9.84 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753350865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.539 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds