Wall clock time and date at job start Tue Mar 31 2020 16:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47175 * 2 1 4 4 C 1.38262 * 119.99774 * 89.99555 * 3 2 1 5 5 C 1.38214 * 120.00033 * 179.71892 * 4 3 2 6 6 C 1.38258 * 119.99736 * 0.28269 * 5 4 3 7 7 C 1.38218 * 120.00315 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00109 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46883 * 90.00215 * 8 7 6 10 10 O 1.21281 * 120.00328 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99975 * 179.97438 * 9 8 7 12 12 C 1.47026 * 125.64688 * 359.69193 * 11 9 8 13 13 C 1.54317 * 107.27768 * 180.96512 * 12 11 9 14 14 C 1.55165 * 102.86071 * 22.52562 * 13 12 11 15 15 H 1.09007 * 111.03216 * 82.38964 * 14 13 12 16 16 C 1.52996 * 111.00584 * 206.22719 * 14 13 12 17 17 N 1.46502 * 109.47206 * 287.20108 * 16 14 13 18 18 C 1.46500 * 120.00481 * 89.99361 * 17 16 14 19 19 C 1.36940 * 119.99775 * 269.99637 * 17 16 14 20 20 H 1.08002 * 120.00107 * 142.10229 * 19 17 16 21 21 C 1.38816 * 120.00061 * 322.11332 * 19 17 16 22 22 N 1.31615 * 120.00423 * 157.12326 * 21 19 17 23 23 Si 1.86798 * 119.99644 * 337.11739 * 21 19 17 24 24 H 1.48496 * 109.47139 * 95.74664 * 23 21 19 25 25 H 1.48500 * 109.47176 * 215.75037 * 23 21 19 26 26 H 1.48505 * 109.47272 * 335.74709 * 23 21 19 27 27 C 1.47422 * 125.65357 * 179.97438 * 11 9 8 28 28 C 1.38209 * 120.00257 * 270.18683 * 3 2 1 29 29 H 1.09007 * 109.46977 * 59.99934 * 1 2 3 30 30 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47769 * 300.00283 * 1 2 3 32 32 H 1.08997 * 109.47037 * 239.99591 * 2 1 3 33 33 H 1.09002 * 109.46576 * 119.99828 * 2 1 3 34 34 H 1.07997 * 120.00061 * 0.02562 * 4 3 2 35 35 H 1.07998 * 120.00472 * 180.25779 * 5 4 3 36 36 H 1.07997 * 120.00062 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47179 * 209.99780 * 8 7 6 38 38 H 1.08994 * 109.46890 * 329.99761 * 8 7 6 39 39 H 1.09002 * 109.88544 * 300.51041 * 12 11 9 40 40 H 1.09004 * 109.88249 * 61.67882 * 12 11 9 41 41 H 1.08999 * 110.92741 * 264.11715 * 13 12 11 42 42 H 1.08999 * 110.74397 * 140.85271 * 13 12 11 43 43 H 1.09001 * 109.46747 * 47.19490 * 16 14 13 44 44 H 1.08995 * 109.47383 * 167.19953 * 16 14 13 45 45 H 1.09001 * 109.46422 * 89.95364 * 18 17 16 46 46 H 1.08997 * 109.47163 * 209.95174 * 18 17 16 47 47 H 1.09001 * 109.47261 * 329.95983 * 18 17 16 48 48 H 0.96991 * 120.00398 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.37211 * 274.67822 * 27 11 9 50 50 H 1.09008 * 110.36122 * 36.99998 * 27 11 9 51 51 H 1.08001 * 120.00202 * 0.04739 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7289 3.3736 1.1975 6 6 2.9594 4.0254 0.0001 7 6 2.7241 3.3757 -1.1969 8 6 2.9748 4.0863 -2.5020 9 6 4.3963 3.8448 -2.9404 10 8 5.1334 3.1632 -2.2599 11 7 4.8485 4.3863 -4.0887 12 6 4.0643 5.2235 -5.0084 13 6 4.9846 5.5910 -6.1913 14 6 6.0558 4.4689 -6.1571 15 1 5.6967 3.5698 -6.6580 16 6 7.3717 4.9479 -6.7732 17 7 7.2228 5.0465 -8.2273 18 6 6.7665 6.2997 -8.8336 19 6 7.5101 3.9673 -9.0197 20 1 6.9026 3.7577 -9.8877 21 6 8.5820 3.1424 -8.7072 22 7 8.6097 1.9032 -9.1497 23 14 9.9852 3.7914 -7.6589 24 1 9.7590 3.4141 -6.2406 25 1 11.2662 3.2056 -8.1288 26 1 10.0459 5.2708 -7.7738 27 6 6.2096 4.2325 -4.6337 28 6 2.2590 2.0736 -1.1969 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.0830 1.5633 2.1327 35 1 2.9128 3.8814 2.1328 36 1 3.3234 5.0422 0.0001 37 1 2.2910 3.7052 -3.2604 38 1 2.8118 5.1559 -2.3703 39 1 3.1985 4.6679 -5.3686 40 1 3.7395 6.1305 -4.4984 41 1 5.4442 6.5674 -6.0384 42 1 4.4329 5.5688 -7.1311 43 1 7.6281 5.9264 -6.3670 44 1 8.1637 4.2374 -6.5365 45 1 7.6278 6.9276 -9.0615 46 1 6.2225 6.0817 -9.7526 47 1 6.1100 6.8221 -8.1378 48 1 9.3588 1.3270 -8.9316 49 1 6.8783 4.9759 -4.1999 50 1 6.5836 3.2267 -4.4418 51 1 2.0754 1.5659 -2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753350865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:55 Heat of formation + Delta-G solvation = -14.954416 kcal Electronic energy + Delta-G solvation = -28030.587227 eV Core-core repulsion = 24315.200077 eV Total energy + Delta-G solvation = -3715.387149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.33032 -40.23867 -38.93201 -37.17572 -35.35149 -34.00003 -33.46499 -32.58159 -30.52436 -30.40295 -28.95396 -28.04939 -26.81997 -24.81765 -24.26172 -22.99826 -22.88296 -21.62199 -21.36180 -20.07791 -18.75946 -18.17022 -17.52329 -17.36168 -17.06263 -16.73418 -16.24473 -15.96803 -15.74431 -15.26435 -15.16047 -14.84358 -14.67316 -14.51076 -14.46293 -14.13703 -14.00189 -13.91271 -13.74309 -13.55451 -13.35913 -12.98658 -12.93621 -12.83891 -12.67516 -12.61189 -12.53561 -12.41159 -12.16778 -11.91868 -11.82211 -11.70600 -11.65192 -11.53335 -11.28882 -11.00842 -10.63658 -9.70306 -9.66886 -9.50855 -8.74123 -8.22366 -5.58555 0.40451 0.49937 1.28619 1.38136 1.48625 1.59466 1.98929 2.39951 2.85314 3.00512 3.36794 3.60230 3.67445 3.74617 3.80735 3.95135 4.00478 4.09007 4.21329 4.25980 4.31669 4.35557 4.43267 4.47757 4.49015 4.54564 4.57230 4.62586 4.68136 4.73652 4.76578 4.79302 4.86155 4.91927 5.00186 5.04994 5.07337 5.13452 5.18137 5.19436 5.20899 5.25119 5.29646 5.36490 5.46544 5.56390 5.65058 5.72019 5.93848 6.13152 6.16448 6.54031 6.99802 7.12737 7.64127 8.05414 8.97618 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017599 B = 0.002423 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.661395 B =11554.877014 C =11993.353003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.092 4.092 4 C -0.129 4.129 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.077 4.077 8 C -0.086 4.086 9 C 0.521 3.479 10 O -0.587 6.587 11 N -0.618 5.618 12 C 0.100 3.900 13 C -0.110 4.110 14 C -0.108 4.108 15 H 0.053 0.947 16 C 0.146 3.854 17 N -0.621 5.621 18 C 0.121 3.879 19 C -0.254 4.254 20 H 0.043 0.957 21 C -0.021 4.021 22 N -0.949 5.949 23 Si 0.937 3.063 24 H -0.279 1.279 25 H -0.310 1.310 26 H -0.255 1.255 27 C 0.111 3.889 28 C -0.124 4.124 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.024 0.976 45 H 0.010 0.990 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.261 0.739 49 H 0.074 0.926 50 H 0.041 0.959 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.806 8.151 19.796 28.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.092 4.092 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.143 4.143 7 C -0.077 4.077 8 C -0.126 4.126 9 C 0.312 3.688 10 O -0.468 6.468 11 N -0.351 5.351 12 C -0.021 4.021 13 C -0.148 4.148 14 C -0.130 4.130 15 H 0.072 0.928 16 C 0.020 3.980 17 N -0.345 5.345 18 C -0.023 4.023 19 C -0.384 4.384 20 H 0.061 0.939 21 C -0.218 4.218 22 N -0.593 5.593 23 Si 0.766 3.234 24 H -0.207 1.207 25 H -0.239 1.239 26 H -0.179 1.179 27 C -0.013 4.013 28 C -0.142 4.142 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.042 0.958 45 H 0.029 0.971 46 H 0.056 0.944 47 H 0.091 0.909 48 H 0.070 0.930 49 H 0.093 0.907 50 H 0.059 0.941 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.393 7.683 20.171 28.358 hybrid contribution 1.406 -0.638 -0.123 1.549 sum -16.987 7.045 20.048 27.205 Atomic orbital electron populations 1.21707 0.93585 1.02420 1.02095 1.20587 0.97084 0.91646 1.03074 1.20132 0.98966 0.97025 0.93118 1.21291 1.00120 0.95253 0.97992 1.21399 0.99003 0.95222 0.98561 1.21221 1.00039 1.00841 0.92188 1.19499 0.99066 0.94673 0.94477 1.20683 0.91653 1.04238 0.95984 1.20937 0.90536 0.78248 0.79122 1.90706 1.60070 1.40972 1.55033 1.48687 1.13250 1.51164 1.21994 1.22335 0.94539 0.95248 0.89986 1.22644 0.95784 0.98136 0.98207 1.22776 0.98466 0.99549 0.92227 0.92817 1.21122 0.94340 0.98950 0.83579 1.44123 1.79011 1.10356 1.01022 1.21272 0.97141 0.86253 0.97619 1.18680 1.08069 1.02723 1.08927 0.93924 1.26069 0.99898 0.95726 1.00059 1.69996 1.32264 1.06363 1.50683 0.85944 0.79459 0.79807 0.78174 1.20681 1.23922 1.17852 1.22144 0.84827 1.00483 0.93806 1.21048 1.00556 0.94415 0.98172 0.92990 0.91264 0.92235 0.91607 0.90208 0.84398 0.84009 0.85088 0.86090 0.84936 0.89948 0.87836 0.88951 0.89479 0.90837 0.95759 0.97146 0.94377 0.90865 0.92988 0.90736 0.94064 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.14 16 2 C -0.09 -1.42 6.06 29.85 0.18 -1.24 16 3 C -0.09 -1.92 5.13 -19.87 -0.10 -2.02 16 4 C -0.13 -2.43 9.70 22.27 0.22 -2.22 16 5 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 6 C -0.12 -2.59 9.70 22.27 0.22 -2.37 16 7 C -0.08 -1.72 4.37 -19.86 -0.09 -1.80 16 8 C -0.09 -1.62 5.02 29.10 0.15 -1.48 16 9 C 0.52 14.92 7.84 87.66 0.69 15.61 16 10 O -0.59 -22.79 16.29 -3.03 -0.05 -22.84 16 11 N -0.62 -16.65 3.33 -811.77 -2.70 -19.35 16 12 C 0.10 1.86 6.48 86.73 0.56 2.42 16 13 C -0.11 -2.51 5.03 31.78 0.16 -2.35 16 14 C -0.11 -3.68 3.25 -9.40 -0.03 -3.71 16 15 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 16 C 0.15 5.73 4.02 86.38 0.35 6.08 16 17 N -0.62 -27.49 2.44 -726.94 -1.77 -29.27 16 18 C 0.12 4.20 10.51 127.77 1.34 5.54 16 19 C -0.25 -14.12 9.90 84.03 0.83 -13.28 16 20 H 0.04 2.63 8.06 -2.91 -0.02 2.60 16 21 C -0.02 -1.23 5.29 84.86 0.45 -0.79 16 22 N -0.95 -59.97 13.97 21.65 0.30 -59.66 16 23 Si 0.94 46.70 25.09 68.60 1.72 48.42 16 24 H -0.28 -13.55 6.68 99.48 0.66 -12.88 16 25 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 26 H -0.25 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.11 3.66 6.38 86.86 0.55 4.21 16 28 C -0.12 -2.86 9.36 22.27 0.21 -2.65 16 29 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 33 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 34 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.12 1.78 8.09 -2.39 -0.02 1.76 16 38 H 0.13 1.62 8.08 -2.39 -0.02 1.60 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.77 7.58 -2.39 -0.02 1.76 16 42 H 0.09 1.97 8.07 -2.39 -0.02 1.95 16 43 H 0.07 2.42 7.90 -2.39 -0.02 2.40 16 44 H 0.02 1.12 3.36 -2.39 -0.01 1.11 16 45 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.04 1.34 8.04 -2.39 -0.02 1.32 16 47 H 0.07 1.93 6.41 -2.39 -0.02 1.91 16 48 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 49 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 50 H 0.04 1.62 8.04 -2.38 -0.02 1.60 16 51 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -76.84 405.38 4.96 -71.88 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.84 Total: 14.14 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 6.62 Total: -3.32 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -4.17 Total: -108.28 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.72 Total: 48.42 kcal Total: -76.84 4.96 -71.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753350865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.924 kcal (2) G-P(sol) polarization free energy of solvation -76.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds