Wall clock time and date at job start Tue Mar 31 2020 16:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46874 * 2 1 4 4 C 1.38257 * 119.99930 * 270.01515 * 3 2 1 5 5 C 1.38214 * 120.00302 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.99715 * 359.75715 * 5 4 3 7 7 C 1.38211 * 119.99894 * 0.50030 * 6 5 4 8 8 C 1.50700 * 120.00196 * 179.77096 * 7 6 5 9 9 C 1.50701 * 109.47111 * 269.72701 * 8 7 6 10 10 O 1.21276 * 119.99728 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99936 * 179.97438 * 9 8 7 12 12 C 1.47017 * 125.64945 * 0.04048 * 11 9 8 13 13 C 1.54329 * 107.27078 * 178.90312 * 12 11 9 14 14 C 1.55154 * 102.94157 * 337.80789 * 13 12 11 15 15 H 1.08998 * 111.03567 * 277.41383 * 14 13 12 16 16 C 1.52998 * 111.00439 * 153.57462 * 14 13 12 17 17 N 1.46501 * 109.47082 * 72.80427 * 16 14 13 18 18 C 1.46493 * 119.99981 * 90.00290 * 17 16 14 19 19 C 1.36943 * 119.99773 * 270.00281 * 17 16 14 20 20 H 1.07997 * 120.00094 * 22.84337 * 19 17 16 21 21 C 1.38811 * 119.99806 * 202.84740 * 19 17 16 22 22 N 1.31620 * 120.00236 * 13.22830 * 21 19 17 23 23 Si 1.86800 * 119.99955 * 193.23213 * 21 19 17 24 24 H 1.48500 * 109.47311 * 59.99779 * 23 21 19 25 25 H 1.48500 * 109.46899 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47133 * 299.99437 * 23 21 19 27 27 C 1.47426 * 125.64578 * 179.97438 * 11 9 8 28 28 C 1.38213 * 120.00550 * 89.99814 * 3 2 1 29 29 H 1.09008 * 109.47163 * 60.00550 * 1 2 3 30 30 H 1.09002 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47798 * 300.00488 * 1 2 3 32 32 H 1.08995 * 109.47798 * 239.99512 * 2 1 3 33 33 H 1.09003 * 109.47044 * 119.99011 * 2 1 3 34 34 H 1.08004 * 119.99880 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.00115 * 180.02562 * 5 4 3 36 36 H 1.08001 * 119.99895 * 180.27512 * 6 5 4 37 37 H 1.08998 * 109.47418 * 149.72257 * 8 7 6 38 38 H 1.09001 * 109.46861 * 29.72211 * 8 7 6 39 39 H 1.09005 * 109.88211 * 298.32125 * 12 11 9 40 40 H 1.08997 * 109.88170 * 59.48517 * 12 11 9 41 41 H 1.09001 * 110.71789 * 219.44152 * 13 12 11 42 42 H 1.09001 * 110.71436 * 96.17275 * 13 12 11 43 43 H 1.09002 * 109.47470 * 192.80452 * 16 14 13 44 44 H 1.09010 * 109.46936 * 312.80334 * 16 14 13 45 45 H 1.08996 * 109.47127 * 95.12800 * 18 17 16 46 46 H 1.09006 * 109.46860 * 215.12508 * 18 17 16 47 47 H 1.09000 * 109.47155 * 335.12329 * 18 17 16 48 48 H 0.97002 * 120.00524 * 180.02562 * 22 21 19 49 49 H 1.09001 * 110.36372 * 85.32393 * 27 11 9 50 50 H 1.09000 * 110.46054 * 323.04761 * 27 11 9 51 51 H 1.08005 * 119.99310 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2623 2.0727 -1.1973 5 6 2.7225 3.3760 -1.1974 6 6 2.9479 4.0295 -0.0001 7 6 2.7230 3.3761 1.1969 8 6 2.9736 4.0867 2.5020 9 6 4.3969 3.8505 2.9373 10 8 5.1348 3.1716 2.2552 11 7 4.8496 4.3937 4.0847 12 6 4.0660 5.2326 5.0032 13 6 4.9860 5.5989 6.1869 14 6 6.0610 4.4807 6.1504 15 1 5.7063 3.5804 6.6521 16 6 7.3766 4.9645 6.7636 17 7 7.2305 5.0627 8.2180 18 6 7.5439 3.9093 9.0651 19 6 6.8011 6.2326 8.7856 20 1 6.2310 6.9391 8.2007 21 6 7.0986 6.5103 10.1127 22 7 7.9998 5.7926 10.7492 23 14 6.2199 7.9025 10.9953 24 1 4.7584 7.6396 11.0027 25 1 6.7133 7.9920 12.3930 26 1 6.4890 9.1825 10.2919 27 6 6.2122 4.2440 4.6272 28 6 2.2626 2.0725 1.1969 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.0817 1.5637 -2.1327 35 1 2.9018 3.8853 -2.1328 36 1 3.3032 5.0494 -0.0001 37 1 2.2928 3.7025 3.2615 38 1 2.8063 5.1559 2.3715 39 1 3.7413 6.1389 4.4918 40 1 3.2001 4.6779 5.3645 41 1 4.4342 5.5729 7.1266 42 1 5.4415 6.5771 6.0329 43 1 8.1707 4.2569 6.5251 44 1 7.6286 5.9440 6.3568 45 1 8.5692 3.9912 9.4256 46 1 6.8609 3.8860 9.9143 47 1 7.4346 2.9925 8.4856 48 1 8.2074 5.9864 11.6767 49 1 6.8778 4.9893 4.1918 50 1 6.5906 3.2400 4.4350 51 1 2.0821 1.5635 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753350866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:59 Heat of formation + Delta-G solvation = -1.058986 kcal Electronic energy + Delta-G solvation = -27704.815603 eV Core-core repulsion = 23990.031005 eV Total energy + Delta-G solvation = -3714.784598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.28749 -39.32180 -37.53582 -35.34247 -34.64161 -32.75845 -32.09803 -30.51986 -29.72703 -29.13233 -27.84791 -25.94460 -25.26049 -24.17159 -23.06833 -22.14906 -21.39879 -20.65022 -19.67470 -18.95229 -17.06727 -16.86598 -16.65662 -16.17070 -15.75446 -15.37300 -14.96220 -14.84443 -14.36510 -13.96228 -13.92988 -13.61218 -13.42032 -13.35338 -13.17875 -13.07894 -12.88208 -12.62833 -12.34371 -12.23784 -11.97024 -11.94188 -11.82665 -11.50370 -11.33708 -11.09855 -11.04168 -10.97242 -10.81511 -10.68286 -10.43257 -10.32134 -10.16749 -9.85363 -9.82467 -9.78340 -8.91980 -8.74799 -8.56586 -8.50252 -6.73978 -5.72195 -3.18980 1.18572 1.26771 2.68183 3.06157 3.36649 3.42324 3.43163 3.64932 4.43411 4.47245 4.49608 4.62315 4.66589 4.87541 4.91653 4.94360 5.02495 5.07235 5.09298 5.21917 5.24464 5.27708 5.36204 5.40303 5.43788 5.47803 5.56726 5.62086 5.62849 5.76842 5.84285 5.87998 5.92601 5.96302 5.98350 6.14396 6.25601 6.30986 6.33888 6.41895 6.47043 6.50852 6.55785 6.67351 6.76775 6.86703 6.92588 7.37258 7.61956 7.73311 7.80113 8.22800 8.39731 9.23484 9.87519 10.37062 11.32574 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024166 B = 0.002030 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.389378 B =13792.578725 C =13900.111010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.059 4.059 8 C -0.099 4.099 9 C 0.527 3.473 10 O -0.538 6.538 11 N -0.617 5.617 12 C 0.096 3.904 13 C -0.113 4.113 14 C -0.116 4.116 15 H 0.076 0.924 16 C 0.162 3.838 17 N -0.600 5.600 18 C 0.162 3.838 19 C -0.252 4.252 20 H 0.069 0.931 21 C 0.000 4.000 22 N -0.907 5.907 23 Si 0.902 3.098 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.110 3.890 28 C -0.102 4.102 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.050 0.950 45 H 0.031 0.969 46 H 0.039 0.961 47 H -0.003 1.003 48 H 0.252 0.748 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.462 -6.388 -20.677 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.060 4.060 8 C -0.139 4.139 9 C 0.315 3.685 10 O -0.416 6.416 11 N -0.351 5.351 12 C -0.027 4.027 13 C -0.151 4.151 14 C -0.139 4.139 15 H 0.094 0.906 16 C 0.034 3.966 17 N -0.322 5.322 18 C 0.017 3.983 19 C -0.382 4.382 20 H 0.087 0.913 21 C -0.198 4.198 22 N -0.552 5.552 23 Si 0.732 3.268 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.210 1.210 27 C -0.013 4.013 28 C -0.120 4.120 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.058 0.942 47 H 0.016 0.984 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.017 -6.773 -20.900 26.061 hybrid contribution -0.454 0.875 0.703 1.211 sum -14.471 -5.899 -20.197 25.537 Atomic orbital electron populations 1.21745 0.94751 1.01646 1.02174 1.20542 0.96100 0.92735 1.02914 1.19824 0.99198 0.96105 0.93077 1.20978 1.00520 0.95019 0.97354 1.21056 0.99631 0.94963 0.97799 1.20956 0.99859 1.00000 0.92003 1.19277 0.98662 0.94359 0.93652 1.20662 0.94770 1.02390 0.96052 1.20114 0.89250 0.79387 0.79726 1.90716 1.58434 1.39128 1.53282 1.48623 1.13933 1.50768 1.21780 1.22210 0.95286 0.93849 0.91319 1.22586 0.96502 0.99315 0.96650 1.23176 0.99705 0.98739 0.92234 0.90565 1.20624 0.91874 0.98552 0.85573 1.43857 1.78117 1.10745 0.99498 1.20787 1.00048 0.85005 0.92421 1.19133 1.27288 0.96869 0.94882 0.91288 1.25037 0.97774 0.98495 0.98524 1.70061 1.32380 1.41830 1.10977 0.86378 0.79357 0.82108 0.78931 1.21149 1.21729 1.20976 1.22332 0.83031 1.01680 0.94247 1.20834 0.99645 0.93920 0.97622 0.92624 0.92446 0.92529 0.91084 0.90999 0.86372 0.86154 0.86343 0.88102 0.88086 0.91814 0.91770 0.89434 0.90662 0.94323 0.93176 0.95116 0.94177 0.98447 0.93748 0.91611 0.90980 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.09 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.08 -0.83 5.13 -104.62 -0.54 -1.36 16 4 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 5 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 6 C -0.11 -1.19 9.70 -39.58 -0.38 -1.58 16 7 C -0.06 -0.67 4.37 -104.63 -0.46 -1.13 16 8 C -0.10 -1.03 5.02 -29.03 -0.15 -1.18 16 9 C 0.53 7.50 7.84 -10.98 -0.09 7.41 16 10 O -0.54 -9.73 16.29 5.56 0.09 -9.64 16 11 N -0.62 -8.53 3.33 -170.53 -0.57 -9.10 16 12 C 0.10 1.14 6.49 -3.06 -0.02 1.12 16 13 C -0.11 -1.66 5.29 -24.90 -0.13 -1.79 16 14 C -0.12 -1.89 3.26 -88.48 -0.29 -2.17 16 15 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.16 3.13 5.17 -4.04 -0.02 3.11 16 17 N -0.60 -14.34 2.91 -181.12 -0.53 -14.87 16 18 C 0.16 3.90 8.98 59.84 0.54 4.44 16 19 C -0.25 -6.53 9.16 -15.06 -0.14 -6.67 16 20 H 0.07 1.71 7.10 -52.49 -0.37 1.33 16 21 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 22 N -0.91 -26.05 10.71 55.49 0.59 -25.45 16 23 Si 0.90 21.22 29.57 -169.99 -5.03 16.19 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.11 1.64 6.37 -2.54 -0.02 1.63 16 28 C -0.10 -1.13 9.36 -39.59 -0.37 -1.50 16 29 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.15 7.76 -51.93 -0.40 0.74 16 43 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 44 H 0.05 0.97 7.87 -51.92 -0.41 0.56 16 45 H 0.03 0.81 7.34 -51.93 -0.38 0.42 16 46 H 0.04 1.03 7.34 -51.93 -0.38 0.65 16 47 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.07 0.97 8.04 -51.93 -0.42 0.55 16 50 H 0.07 1.13 8.04 -51.93 -0.42 0.72 16 51 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 410.53 15.07 6.19 6.19 Total: -1.00 -31.64 410.53 -11.06 -42.70 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -9.08 Total: -1.73 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.73 Total: -4.29 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.50 Total: -49.42 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.64 -11.06 -42.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753350866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.644 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds