Wall clock time and date at job start Tue Mar 31 2020 16:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46874 * 2 1 4 4 C 1.38257 * 119.99930 * 270.01515 * 3 2 1 5 5 C 1.38214 * 120.00302 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.99715 * 359.75715 * 5 4 3 7 7 C 1.38211 * 119.99894 * 0.50030 * 6 5 4 8 8 C 1.50700 * 120.00196 * 179.77096 * 7 6 5 9 9 C 1.50701 * 109.47111 * 269.72701 * 8 7 6 10 10 O 1.21276 * 119.99728 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99936 * 179.97438 * 9 8 7 12 12 C 1.47017 * 125.64945 * 0.04048 * 11 9 8 13 13 C 1.54329 * 107.27078 * 178.90312 * 12 11 9 14 14 C 1.55154 * 102.94157 * 337.80789 * 13 12 11 15 15 H 1.08998 * 111.03567 * 277.41383 * 14 13 12 16 16 C 1.52998 * 111.00439 * 153.57462 * 14 13 12 17 17 N 1.46501 * 109.47082 * 72.80427 * 16 14 13 18 18 C 1.46493 * 119.99981 * 90.00290 * 17 16 14 19 19 C 1.36943 * 119.99773 * 270.00281 * 17 16 14 20 20 H 1.07997 * 120.00094 * 22.84337 * 19 17 16 21 21 C 1.38811 * 119.99806 * 202.84740 * 19 17 16 22 22 N 1.31620 * 120.00236 * 13.22830 * 21 19 17 23 23 Si 1.86800 * 119.99955 * 193.23213 * 21 19 17 24 24 H 1.48500 * 109.47311 * 59.99779 * 23 21 19 25 25 H 1.48500 * 109.46899 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47133 * 299.99437 * 23 21 19 27 27 C 1.47426 * 125.64578 * 179.97438 * 11 9 8 28 28 C 1.38213 * 120.00550 * 89.99814 * 3 2 1 29 29 H 1.09008 * 109.47163 * 60.00550 * 1 2 3 30 30 H 1.09002 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47798 * 300.00488 * 1 2 3 32 32 H 1.08995 * 109.47798 * 239.99512 * 2 1 3 33 33 H 1.09003 * 109.47044 * 119.99011 * 2 1 3 34 34 H 1.08004 * 119.99880 * 0.02562 * 4 3 2 35 35 H 1.07999 * 120.00115 * 180.02562 * 5 4 3 36 36 H 1.08001 * 119.99895 * 180.27512 * 6 5 4 37 37 H 1.08998 * 109.47418 * 149.72257 * 8 7 6 38 38 H 1.09001 * 109.46861 * 29.72211 * 8 7 6 39 39 H 1.09005 * 109.88211 * 298.32125 * 12 11 9 40 40 H 1.08997 * 109.88170 * 59.48517 * 12 11 9 41 41 H 1.09001 * 110.71789 * 219.44152 * 13 12 11 42 42 H 1.09001 * 110.71436 * 96.17275 * 13 12 11 43 43 H 1.09002 * 109.47470 * 192.80452 * 16 14 13 44 44 H 1.09010 * 109.46936 * 312.80334 * 16 14 13 45 45 H 1.08996 * 109.47127 * 95.12800 * 18 17 16 46 46 H 1.09006 * 109.46860 * 215.12508 * 18 17 16 47 47 H 1.09000 * 109.47155 * 335.12329 * 18 17 16 48 48 H 0.97002 * 120.00524 * 180.02562 * 22 21 19 49 49 H 1.09001 * 110.36372 * 85.32393 * 27 11 9 50 50 H 1.09000 * 110.46054 * 323.04761 * 27 11 9 51 51 H 1.08005 * 119.99310 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2623 2.0727 -1.1973 5 6 2.7225 3.3760 -1.1974 6 6 2.9479 4.0295 -0.0001 7 6 2.7230 3.3761 1.1969 8 6 2.9736 4.0867 2.5020 9 6 4.3969 3.8505 2.9373 10 8 5.1348 3.1716 2.2552 11 7 4.8496 4.3937 4.0847 12 6 4.0660 5.2326 5.0032 13 6 4.9860 5.5989 6.1869 14 6 6.0610 4.4807 6.1504 15 1 5.7063 3.5804 6.6521 16 6 7.3766 4.9645 6.7636 17 7 7.2305 5.0627 8.2180 18 6 7.5439 3.9093 9.0651 19 6 6.8011 6.2326 8.7856 20 1 6.2310 6.9391 8.2007 21 6 7.0986 6.5103 10.1127 22 7 7.9998 5.7926 10.7492 23 14 6.2199 7.9025 10.9953 24 1 4.7584 7.6396 11.0027 25 1 6.7133 7.9920 12.3930 26 1 6.4890 9.1825 10.2919 27 6 6.2122 4.2440 4.6272 28 6 2.2626 2.0725 1.1969 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.0817 1.5637 -2.1327 35 1 2.9018 3.8853 -2.1328 36 1 3.3032 5.0494 -0.0001 37 1 2.2928 3.7025 3.2615 38 1 2.8063 5.1559 2.3715 39 1 3.7413 6.1389 4.4918 40 1 3.2001 4.6779 5.3645 41 1 4.4342 5.5729 7.1266 42 1 5.4415 6.5771 6.0329 43 1 8.1707 4.2569 6.5251 44 1 7.6286 5.9440 6.3568 45 1 8.5692 3.9912 9.4256 46 1 6.8609 3.8860 9.9143 47 1 7.4346 2.9925 8.4856 48 1 8.2074 5.9864 11.6767 49 1 6.8778 4.9893 4.1918 50 1 6.5906 3.2400 4.4350 51 1 2.0821 1.5635 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753350866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:58 Heat of formation + Delta-G solvation = -16.154423 kcal Electronic energy + Delta-G solvation = -27705.470190 eV Core-core repulsion = 23990.031005 eV Total energy + Delta-G solvation = -3715.439185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.29504 -40.20219 -38.80575 -37.05471 -35.33252 -33.98618 -33.30016 -32.10296 -30.44308 -30.28543 -28.83920 -27.88173 -26.77396 -24.79945 -24.24418 -23.12972 -22.86589 -21.45985 -21.05942 -19.98229 -18.72618 -18.13328 -17.46979 -17.27227 -16.86844 -16.56726 -16.22898 -15.73812 -15.67178 -15.15665 -15.09807 -14.73670 -14.60771 -14.45353 -14.41960 -14.02087 -13.90681 -13.75546 -13.62118 -13.31887 -13.00453 -12.96189 -12.82160 -12.76029 -12.60519 -12.59413 -12.33258 -12.18405 -12.12618 -12.00090 -11.76257 -11.68967 -11.63519 -11.53758 -11.36106 -10.98268 -10.56246 -9.68386 -9.63920 -9.49424 -8.71561 -7.75913 -5.24410 0.42245 0.51609 1.50584 1.52480 1.58465 1.61849 2.02217 2.55878 2.86984 3.36997 3.47363 3.66861 3.77217 3.81044 3.84616 3.98219 4.03222 4.18747 4.23300 4.28620 4.34756 4.39565 4.45967 4.50326 4.56497 4.58616 4.65100 4.68422 4.70014 4.78253 4.86105 4.87064 4.91806 5.01033 5.06061 5.09001 5.14028 5.19638 5.22703 5.27973 5.32934 5.38364 5.42604 5.52450 5.58096 5.66890 5.70296 5.73628 5.75538 6.14643 6.38634 6.55732 7.14615 7.20842 7.92988 8.38550 9.27756 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024166 B = 0.002030 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.389378 B =13792.578725 C =13900.111010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.129 4.129 5 C -0.124 4.124 6 C -0.127 4.127 7 C -0.076 4.076 8 C -0.090 4.090 9 C 0.525 3.475 10 O -0.583 6.583 11 N -0.618 5.618 12 C 0.103 3.897 13 C -0.111 4.111 14 C -0.105 4.105 15 H 0.065 0.935 16 C 0.161 3.839 17 N -0.615 5.615 18 C 0.176 3.824 19 C -0.246 4.246 20 H 0.082 0.918 21 C -0.062 4.062 22 N -0.944 5.944 23 Si 0.965 3.035 24 H -0.276 1.276 25 H -0.303 1.303 26 H -0.275 1.275 27 C 0.116 3.884 28 C -0.121 4.121 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.050 0.950 45 H 0.002 0.998 46 H 0.015 0.985 47 H 0.026 0.974 48 H 0.245 0.755 49 H 0.069 0.931 50 H 0.061 0.939 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.674 -5.705 -22.483 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.147 4.147 5 C -0.142 4.142 6 C -0.145 4.145 7 C -0.077 4.077 8 C -0.129 4.129 9 C 0.315 3.685 10 O -0.464 6.464 11 N -0.351 5.351 12 C -0.019 4.019 13 C -0.149 4.149 14 C -0.127 4.127 15 H 0.083 0.917 16 C 0.034 3.966 17 N -0.338 5.338 18 C 0.031 3.969 19 C -0.376 4.376 20 H 0.100 0.900 21 C -0.256 4.256 22 N -0.592 5.592 23 Si 0.794 3.206 24 H -0.202 1.202 25 H -0.229 1.229 26 H -0.200 1.200 27 C -0.007 4.007 28 C -0.139 4.139 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.020 0.980 46 H 0.034 0.966 47 H 0.044 0.956 48 H 0.054 0.946 49 H 0.087 0.913 50 H 0.079 0.921 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.265 -6.073 -22.740 28.610 hybrid contribution 0.274 0.609 1.164 1.342 sum -15.990 -5.464 -21.576 27.406 Atomic orbital electron populations 1.21714 0.93758 1.02406 1.02032 1.20582 0.96919 0.91578 1.03200 1.20133 0.98866 0.97082 0.93051 1.21290 1.00113 0.95185 0.98084 1.21382 0.99088 0.95240 0.98464 1.21212 1.00225 1.00720 0.92319 1.19485 0.99144 0.94722 0.94315 1.20690 0.92143 1.03980 0.96112 1.20786 0.90395 0.78271 0.79020 1.90696 1.59934 1.41132 1.54611 1.48682 1.13508 1.50879 1.22045 1.22271 0.94646 0.95027 0.89953 1.22512 0.96368 0.98434 0.97550 1.22837 0.98300 0.98808 0.92751 0.91653 1.20754 0.93765 0.98889 0.83151 1.44095 1.78168 1.10217 1.01300 1.20513 0.97641 0.86510 0.92216 1.19532 1.26000 0.97156 0.94924 0.90046 1.25822 0.98949 1.01194 0.99658 1.70243 1.34366 1.43882 1.10711 0.85367 0.78480 0.79708 0.77068 1.20199 1.22934 1.20044 1.22127 0.84211 1.01172 0.93199 1.21036 1.00388 0.94257 0.98235 0.92410 0.91234 0.93007 0.90199 0.91314 0.84431 0.84178 0.85391 0.86073 0.85581 0.88935 0.89755 0.90643 0.91010 0.93906 0.93163 0.97963 0.96622 0.95555 0.94630 0.91316 0.92089 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 71.98 0.71 -0.95 16 2 C -0.09 -1.24 6.06 29.85 0.18 -1.06 16 3 C -0.09 -1.74 5.13 -19.87 -0.10 -1.84 16 4 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 5 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 6 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 7 C -0.08 -1.62 4.37 -19.87 -0.09 -1.71 16 8 C -0.09 -1.64 5.02 29.10 0.15 -1.49 16 9 C 0.52 13.99 7.84 87.66 0.69 14.68 16 10 O -0.58 -20.76 16.29 -3.02 -0.05 -20.81 16 11 N -0.62 -15.70 3.33 -811.83 -2.70 -18.40 16 12 C 0.10 2.09 6.49 86.73 0.56 2.66 16 13 C -0.11 -3.03 5.29 31.78 0.17 -2.86 16 14 C -0.11 -3.28 3.26 -9.41 -0.03 -3.31 16 15 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 16 C 0.16 6.11 5.17 86.38 0.45 6.55 16 17 N -0.61 -29.36 2.91 -726.93 -2.11 -31.47 16 18 C 0.18 8.63 8.98 127.77 1.15 9.78 16 19 C -0.25 -12.63 9.16 84.03 0.77 -11.86 16 20 H 0.08 3.91 7.10 -2.91 -0.02 3.89 16 21 C -0.06 -3.38 5.10 84.86 0.43 -2.95 16 22 N -0.94 -55.52 10.71 21.65 0.23 -55.29 16 23 Si 0.96 43.68 29.57 68.60 2.03 45.71 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C 0.12 3.34 6.37 86.85 0.55 3.89 16 28 C -0.12 -2.57 9.36 22.27 0.21 -2.36 16 29 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 33 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 34 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.12 1.70 8.09 -2.39 -0.02 1.68 16 38 H 0.13 1.65 8.08 -2.39 -0.02 1.63 16 39 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.07 2.02 7.76 -2.39 -0.02 2.00 16 43 H 0.04 1.57 8.07 -2.39 -0.02 1.55 16 44 H 0.05 1.90 7.87 -2.38 -0.02 1.88 16 45 H 0.00 0.11 7.34 -2.39 -0.02 0.10 16 46 H 0.01 0.80 7.34 -2.38 -0.02 0.79 16 47 H 0.03 1.10 8.03 -2.39 -0.02 1.08 16 48 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 49 H 0.07 1.94 8.04 -2.39 -0.02 1.92 16 50 H 0.06 1.89 8.04 -2.39 -0.02 1.87 16 51 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -69.17 410.53 4.72 -64.45 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.87 Total: 15.05 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 6.45 Total: 0.75 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -4.58 Total: -105.15 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.05 Total: -20.81 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -69.17 4.72 -64.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753350866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.293 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds