Wall clock time and date at job start Tue Mar 31 2020 16:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47078 * 2 1 4 4 C 1.38254 * 120.00258 * 265.18726 * 3 2 1 5 5 C 1.38218 * 120.00008 * 180.21013 * 4 3 2 6 6 C 1.38263 * 119.99896 * 359.85531 * 5 4 3 7 7 C 1.38211 * 120.00034 * 359.95958 * 6 5 4 8 8 C 1.38222 * 119.99771 * 85.00163 * 3 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 8 3 2 10 10 H 1.09002 * 115.54932 * 334.14368 * 9 8 3 11 11 C 1.53000 * 117.50034 * 188.47304 * 9 8 3 12 12 C 1.53002 * 117.49992 * 119.81531 * 9 8 3 13 13 H 1.08999 * 117.49664 * 0.02562 * 12 9 8 14 14 C 1.50695 * 117.50044 * 215.00770 * 12 9 8 15 15 O 1.21285 * 120.00075 * 359.97438 * 14 12 9 16 16 N 1.34778 * 120.00347 * 180.02562 * 14 12 9 17 17 C 1.46506 * 119.99879 * 359.97438 * 16 14 12 18 18 C 1.46503 * 120.00193 * 179.97438 * 16 14 12 19 19 H 1.09000 * 109.46806 * 359.97438 * 18 16 14 20 20 C 1.52998 * 109.47025 * 119.99612 * 18 16 14 21 21 C 1.52994 * 109.46898 * 239.99860 * 18 16 14 22 22 N 1.46497 * 109.47586 * 54.99691 * 21 18 16 23 23 C 1.36939 * 120.00332 * 179.97438 * 22 21 18 24 24 H 1.07998 * 119.99635 * 359.97438 * 23 22 21 25 25 C 1.38811 * 119.99926 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00193 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99755 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47298 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47400 * 119.99885 * 27 25 23 30 30 H 1.48500 * 109.47185 * 239.99946 * 27 25 23 31 31 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46849 * 299.99930 * 1 2 3 33 33 H 1.08994 * 109.46941 * 59.99286 * 1 2 3 34 34 H 1.09000 * 109.47253 * 240.00413 * 2 1 3 35 35 H 1.09002 * 109.47197 * 120.00126 * 2 1 3 36 36 H 1.07994 * 120.00256 * 0.04432 * 4 3 2 37 37 H 1.07997 * 119.99901 * 179.84151 * 5 4 3 38 38 H 1.08001 * 120.00010 * 179.97438 * 6 5 4 39 39 H 1.08001 * 120.00029 * 179.97438 * 7 6 5 40 40 H 1.09008 * 117.49673 * 359.97438 * 11 9 8 41 41 H 1.08999 * 117.49959 * 144.99344 * 11 9 8 42 42 H 1.08995 * 109.46963 * 89.99958 * 17 16 14 43 43 H 1.08994 * 109.46929 * 210.00377 * 17 16 14 44 44 H 1.09005 * 109.46499 * 330.00751 * 17 16 14 45 45 H 1.08995 * 109.46887 * 180.02562 * 20 18 16 46 46 H 1.09004 * 109.47183 * 300.00155 * 20 18 16 47 47 H 1.09008 * 109.46759 * 60.00133 * 20 18 16 48 48 H 1.08997 * 109.47128 * 175.00328 * 21 18 16 49 49 H 1.09001 * 109.47052 * 294.99588 * 21 18 16 50 50 H 0.96996 * 119.99859 * 0.02562 * 22 21 18 51 51 H 0.97001 * 119.99777 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3575 2.0391 -1.1931 5 6 2.8223 3.3408 -1.1926 6 6 2.9593 4.0255 0.0007 7 6 2.6307 3.4087 1.1930 8 6 2.1644 2.1071 1.1925 9 6 1.8055 1.4348 2.4925 10 1 1.0714 0.6322 2.4198 11 6 1.7820 2.3014 3.7532 12 6 2.9102 1.2888 3.5410 13 1 3.8964 1.6795 3.2906 14 6 2.9003 0.0465 4.3940 15 8 2.0375 -0.7910 4.2356 16 7 3.8496 -0.1334 5.3336 17 6 4.8916 0.8785 5.5254 18 6 3.8396 -1.3409 6.1632 19 1 2.9970 -1.9707 5.8779 20 6 5.1454 -2.1114 5.9579 21 6 3.7059 -0.9469 7.6355 22 7 2.5177 -0.1080 7.8106 23 6 2.1922 0.3674 9.0529 24 1 2.8113 0.1235 9.9036 25 6 1.0661 1.1618 9.2188 26 7 0.3115 1.4586 8.1821 27 14 0.6225 1.8109 10.9133 28 1 1.6242 1.3381 11.9024 29 1 0.6139 3.2957 10.8881 30 1 -0.7235 1.3146 11.2968 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.2509 1.5042 -2.1251 37 1 3.0788 3.8229 -2.1244 38 1 3.3229 5.0425 0.0011 39 1 2.7380 3.9434 2.1252 40 1 2.0267 3.3579 3.6423 41 1 1.0326 2.0691 4.5098 42 1 4.5578 1.6083 6.2629 43 1 5.8044 0.3979 5.8770 44 1 5.0874 1.3821 4.5787 45 1 5.1377 -3.0100 6.5748 46 1 5.2407 -2.3920 4.9089 47 1 5.9878 -1.4813 6.2435 48 1 3.6092 -1.8456 8.2447 49 1 4.5914 -0.3918 7.9449 50 1 1.9612 0.1101 7.0467 51 1 -0.4752 2.0141 8.2981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753709499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:51 Heat of formation + Delta-G solvation = 21.147896 kcal Electronic energy + Delta-G solvation = -28933.357798 eV Core-core repulsion = 25219.536163 eV Total energy + Delta-G solvation = -3713.821635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.36230 -39.36497 -36.91703 -35.65874 -34.24534 -33.94069 -31.87327 -30.57193 -29.99785 -29.36982 -26.59961 -25.64440 -24.69417 -23.83523 -23.76055 -22.47967 -21.06064 -20.57255 -19.90198 -18.49960 -17.44620 -17.03311 -16.41807 -16.07528 -15.44530 -15.09000 -14.93060 -14.68469 -14.14231 -13.96590 -13.75866 -13.57733 -13.51783 -13.25457 -13.17890 -12.78082 -12.56293 -12.43216 -12.25976 -12.22873 -11.88991 -11.86866 -11.73871 -11.62916 -11.45816 -11.37613 -10.90492 -10.84758 -10.75572 -10.74267 -10.50302 -10.39509 -10.20849 -9.99708 -9.68007 -9.35281 -8.85873 -8.83279 -8.49052 -8.17289 -6.86852 -5.71521 -3.00148 1.23943 1.31834 2.92562 3.29829 3.44451 3.50048 3.52310 3.64953 4.22756 4.53968 4.61922 4.70998 4.77772 4.90621 4.94806 4.98464 5.09730 5.12071 5.21163 5.30187 5.36237 5.41331 5.45999 5.47344 5.49908 5.53928 5.59143 5.63208 5.76192 5.83210 5.88077 5.95455 5.98582 6.01289 6.06957 6.13230 6.17044 6.19354 6.21579 6.27328 6.33095 6.41295 6.43707 6.51632 6.52526 6.67929 6.77537 6.94200 7.05335 7.72739 7.81637 8.46366 8.63653 9.58064 10.17124 10.52966 11.50727 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003207 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.437120 B = 8727.746879 C = 9541.923278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.071 4.071 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.043 4.043 9 C -0.094 4.094 10 H 0.128 0.872 11 C -0.135 4.135 12 C -0.173 4.173 13 H 0.120 0.880 14 C 0.548 3.452 15 O -0.541 6.541 16 N -0.593 5.593 17 C 0.081 3.919 18 C 0.126 3.874 19 H 0.099 0.901 20 C -0.155 4.155 21 C 0.144 3.856 22 N -0.727 5.727 23 C -0.239 4.239 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.928 5.928 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.027 0.973 49 H 0.020 0.980 50 H 0.386 0.614 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.983 1.504 -18.651 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.071 4.071 4 C -0.137 4.137 5 C -0.144 4.144 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.043 4.043 9 C -0.113 4.113 10 H 0.146 0.854 11 C -0.172 4.172 12 C -0.194 4.194 13 H 0.138 0.862 14 C 0.337 3.663 15 O -0.419 6.419 16 N -0.325 5.325 17 C -0.062 4.062 18 C 0.022 3.978 19 H 0.117 0.883 20 C -0.214 4.214 21 C 0.016 3.984 22 N -0.372 5.372 23 C -0.370 4.370 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.122 0.878 41 H 0.135 0.865 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.044 0.956 49 H 0.037 0.963 50 H 0.221 0.779 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.545 1.076 -18.535 20.438 hybrid contribution -0.268 0.678 0.826 1.102 sum 8.277 1.754 -17.709 19.627 Atomic orbital electron populations 1.21744 0.94575 1.01898 1.02165 1.20587 0.96421 0.92543 1.03103 1.19745 0.98680 0.96275 0.92370 1.20991 1.00205 0.95198 0.97281 1.21088 1.00427 0.94892 0.97945 1.21079 1.00771 0.99821 0.92514 1.21109 0.99362 0.94605 0.98433 1.19055 0.98672 0.93654 0.92962 1.21149 1.00724 1.02332 0.87062 0.85377 1.23181 0.99323 0.95782 0.98914 1.22320 0.96446 0.98486 1.02121 0.86219 1.19456 0.80687 0.86421 0.79783 1.90670 1.36566 1.45092 1.69539 1.47539 1.28342 1.21281 1.35314 1.21735 0.90845 0.91984 1.01640 1.21377 0.98869 0.85974 0.91548 0.88262 1.22064 0.97388 1.00259 1.01676 1.20992 0.91390 0.94455 0.91598 1.42296 1.27258 1.59201 1.08415 1.19249 1.06822 1.24325 0.86595 0.91327 1.24722 0.97982 1.01062 0.97116 1.69690 1.17541 1.42106 1.28321 0.86156 0.77963 0.78354 0.83938 1.20671 1.21961 1.21937 0.92299 0.92072 0.92899 0.91400 0.90140 0.86288 0.86390 0.86246 0.85718 0.87847 0.86523 0.91654 0.91451 0.91775 0.91429 0.92677 0.92382 0.95576 0.96251 0.77932 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.74 37.16 0.36 -1.20 16 2 C -0.09 -0.99 5.38 -27.88 -0.15 -1.14 16 3 C -0.07 -0.83 5.13 -104.62 -0.54 -1.37 16 4 C -0.12 -1.22 9.68 -39.58 -0.38 -1.60 16 5 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 6 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 7 C -0.12 -1.33 9.30 -39.58 -0.37 -1.70 16 8 C -0.04 -0.54 5.61 -104.62 -0.59 -1.13 16 9 C -0.09 -1.34 4.65 -91.77 -0.43 -1.77 16 10 H 0.13 2.03 5.47 -51.93 -0.28 1.74 16 11 C -0.13 -2.02 9.57 -26.70 -0.26 -2.27 16 12 C -0.17 -2.56 4.92 -91.74 -0.45 -3.01 16 13 H 0.12 1.50 6.44 -51.93 -0.33 1.17 16 14 C 0.55 10.01 7.16 -10.99 -0.08 9.93 16 15 O -0.54 -11.72 15.59 5.55 0.09 -11.64 16 16 N -0.59 -9.99 2.24 -173.93 -0.39 -10.38 16 17 C 0.08 1.11 9.43 59.85 0.56 1.68 16 18 C 0.13 2.19 2.80 -67.93 -0.19 2.00 16 19 H 0.10 1.98 6.90 -51.93 -0.36 1.62 16 20 C -0.16 -2.04 9.17 37.16 0.34 -1.69 16 21 C 0.14 2.95 5.55 -4.05 -0.02 2.93 16 22 N -0.73 -18.86 5.43 -59.91 -0.33 -19.18 16 23 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 24 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 27 Si 0.90 22.62 29.55 -169.99 -5.02 17.60 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 30 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.73 7.17 -51.93 -0.37 0.36 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 35 H 0.08 1.02 6.95 -51.93 -0.36 0.66 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.13 1.29 6.03 -52.49 -0.32 0.97 16 40 H 0.10 1.30 6.18 -51.92 -0.32 0.98 16 41 H 0.12 2.14 8.14 -51.93 -0.42 1.71 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 44 H 0.06 0.72 6.00 -51.93 -0.31 0.40 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.68 6.66 -51.92 -0.35 0.34 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 50 H 0.39 10.83 7.06 -40.82 -0.29 10.54 16 51 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 405.36 15.07 6.11 6.11 Total: -1.00 -33.14 405.36 -10.27 -43.41 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -8.23 Total: 12.63 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -3.23 Total: -10.96 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.01 Total: -57.15 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.14 -10.27 -43.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753709499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.558 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds