Wall clock time and date at job start Tue Mar 31 2020 16:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47078 * 2 1 4 4 C 1.38254 * 120.00258 * 265.18726 * 3 2 1 5 5 C 1.38218 * 120.00008 * 180.21013 * 4 3 2 6 6 C 1.38263 * 119.99896 * 359.85531 * 5 4 3 7 7 C 1.38211 * 120.00034 * 359.95958 * 6 5 4 8 8 C 1.38222 * 119.99771 * 85.00163 * 3 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 8 3 2 10 10 H 1.09002 * 115.54932 * 334.14368 * 9 8 3 11 11 C 1.53000 * 117.50034 * 188.47304 * 9 8 3 12 12 C 1.53002 * 117.49992 * 119.81531 * 9 8 3 13 13 H 1.08999 * 117.49664 * 0.02562 * 12 9 8 14 14 C 1.50695 * 117.50044 * 215.00770 * 12 9 8 15 15 O 1.21285 * 120.00075 * 359.97438 * 14 12 9 16 16 N 1.34778 * 120.00347 * 180.02562 * 14 12 9 17 17 C 1.46506 * 119.99879 * 359.97438 * 16 14 12 18 18 C 1.46503 * 120.00193 * 179.97438 * 16 14 12 19 19 H 1.09000 * 109.46806 * 359.97438 * 18 16 14 20 20 C 1.52998 * 109.47025 * 119.99612 * 18 16 14 21 21 C 1.52994 * 109.46898 * 239.99860 * 18 16 14 22 22 N 1.46497 * 109.47586 * 54.99691 * 21 18 16 23 23 C 1.36939 * 120.00332 * 179.97438 * 22 21 18 24 24 H 1.07998 * 119.99635 * 359.97438 * 23 22 21 25 25 C 1.38811 * 119.99926 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00193 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99755 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47298 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47400 * 119.99885 * 27 25 23 30 30 H 1.48500 * 109.47185 * 239.99946 * 27 25 23 31 31 H 1.08997 * 109.46835 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46849 * 299.99930 * 1 2 3 33 33 H 1.08994 * 109.46941 * 59.99286 * 1 2 3 34 34 H 1.09000 * 109.47253 * 240.00413 * 2 1 3 35 35 H 1.09002 * 109.47197 * 120.00126 * 2 1 3 36 36 H 1.07994 * 120.00256 * 0.04432 * 4 3 2 37 37 H 1.07997 * 119.99901 * 179.84151 * 5 4 3 38 38 H 1.08001 * 120.00010 * 179.97438 * 6 5 4 39 39 H 1.08001 * 120.00029 * 179.97438 * 7 6 5 40 40 H 1.09008 * 117.49673 * 359.97438 * 11 9 8 41 41 H 1.08999 * 117.49959 * 144.99344 * 11 9 8 42 42 H 1.08995 * 109.46963 * 89.99958 * 17 16 14 43 43 H 1.08994 * 109.46929 * 210.00377 * 17 16 14 44 44 H 1.09005 * 109.46499 * 330.00751 * 17 16 14 45 45 H 1.08995 * 109.46887 * 180.02562 * 20 18 16 46 46 H 1.09004 * 109.47183 * 300.00155 * 20 18 16 47 47 H 1.09008 * 109.46759 * 60.00133 * 20 18 16 48 48 H 1.08997 * 109.47128 * 175.00328 * 21 18 16 49 49 H 1.09001 * 109.47052 * 294.99588 * 21 18 16 50 50 H 0.96996 * 119.99859 * 0.02562 * 22 21 18 51 51 H 0.97001 * 119.99777 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3575 2.0391 -1.1931 5 6 2.8223 3.3408 -1.1926 6 6 2.9593 4.0255 0.0007 7 6 2.6307 3.4087 1.1930 8 6 2.1644 2.1071 1.1925 9 6 1.8055 1.4348 2.4925 10 1 1.0714 0.6322 2.4198 11 6 1.7820 2.3014 3.7532 12 6 2.9102 1.2888 3.5410 13 1 3.8964 1.6795 3.2906 14 6 2.9003 0.0465 4.3940 15 8 2.0375 -0.7910 4.2356 16 7 3.8496 -0.1334 5.3336 17 6 4.8916 0.8785 5.5254 18 6 3.8396 -1.3409 6.1632 19 1 2.9970 -1.9707 5.8779 20 6 5.1454 -2.1114 5.9579 21 6 3.7059 -0.9469 7.6355 22 7 2.5177 -0.1080 7.8106 23 6 2.1922 0.3674 9.0529 24 1 2.8113 0.1235 9.9036 25 6 1.0661 1.1618 9.2188 26 7 0.3115 1.4586 8.1821 27 14 0.6225 1.8109 10.9133 28 1 1.6242 1.3381 11.9024 29 1 0.6139 3.2957 10.8881 30 1 -0.7235 1.3146 11.2968 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.2509 1.5042 -2.1251 37 1 3.0788 3.8229 -2.1244 38 1 3.3229 5.0425 0.0011 39 1 2.7380 3.9434 2.1252 40 1 2.0267 3.3579 3.6423 41 1 1.0326 2.0691 4.5098 42 1 4.5578 1.6083 6.2629 43 1 5.8044 0.3979 5.8770 44 1 5.0874 1.3821 4.5787 45 1 5.1377 -3.0100 6.5748 46 1 5.2407 -2.3920 4.9089 47 1 5.9878 -1.4813 6.2435 48 1 3.6092 -1.8456 8.2447 49 1 4.5914 -0.3918 7.9449 50 1 1.9612 0.1101 7.0467 51 1 -0.4752 2.0141 8.2981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753709499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:50 Heat of formation + Delta-G solvation = 3.392428 kcal Electronic energy + Delta-G solvation = -28934.127733 eV Core-core repulsion = 25219.536163 eV Total energy + Delta-G solvation = -3714.591570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.54605 -40.46549 -38.23897 -37.03275 -35.83470 -35.08251 -33.53783 -31.90810 -31.32048 -30.20891 -27.82726 -27.38286 -25.94484 -24.89690 -24.65883 -24.36578 -22.02005 -21.82501 -20.96439 -19.90681 -19.09687 -18.66601 -17.43602 -17.32719 -16.74762 -16.46382 -16.28170 -15.91579 -15.45897 -15.25182 -15.13296 -14.91989 -14.72002 -14.40520 -14.14370 -14.07774 -13.92886 -13.73975 -13.68650 -13.26293 -13.14787 -13.04849 -12.92844 -12.82019 -12.73787 -12.66451 -12.51874 -12.27804 -12.10299 -11.83997 -11.81198 -11.75296 -11.70519 -11.45938 -11.33197 -11.00808 -10.76331 -9.65297 -9.57455 -9.37079 -8.99926 -7.93339 -5.23325 0.39521 0.52050 1.44694 1.46305 1.52706 1.56128 2.02498 2.54710 2.69903 3.12051 3.39189 3.42336 3.67210 3.77528 3.85121 3.91756 3.94935 4.00262 4.10314 4.14161 4.24432 4.30446 4.34520 4.36630 4.46760 4.48601 4.63763 4.64886 4.67542 4.70003 4.76536 4.78457 4.85198 4.90169 4.96477 4.97488 5.03634 5.07635 5.12213 5.14900 5.17939 5.27458 5.30817 5.36256 5.47549 5.64823 5.66335 5.68030 5.81635 6.15644 6.26121 6.45874 7.22414 7.32746 8.08752 8.32562 9.29599 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.003207 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.437120 B = 8727.746879 C = 9541.923278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.125 4.125 8 C -0.062 4.062 9 C -0.079 4.079 10 H 0.102 0.898 11 C -0.139 4.139 12 C -0.168 4.168 13 H 0.150 0.850 14 C 0.535 3.465 15 O -0.588 6.588 16 N -0.592 5.592 17 C 0.078 3.922 18 C 0.128 3.872 19 H 0.065 0.935 20 C -0.142 4.142 21 C 0.143 3.857 22 N -0.742 5.742 23 C -0.243 4.243 24 H 0.077 0.923 25 C -0.075 4.075 26 N -0.966 5.966 27 Si 0.974 3.026 28 H -0.265 1.265 29 H -0.291 1.291 30 H -0.297 1.297 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.140 0.860 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.028 0.972 49 H 0.037 0.963 50 H 0.371 0.629 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.691 2.673 -19.892 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.084 4.084 4 C -0.140 4.140 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.143 4.143 8 C -0.062 4.062 9 C -0.098 4.098 10 H 0.120 0.880 11 C -0.176 4.176 12 C -0.188 4.188 13 H 0.168 0.832 14 C 0.325 3.675 15 O -0.470 6.470 16 N -0.323 5.323 17 C -0.064 4.064 18 C 0.024 3.976 19 H 0.083 0.917 20 C -0.200 4.200 21 C 0.015 3.985 22 N -0.384 5.384 23 C -0.375 4.375 24 H 0.095 0.905 25 C -0.267 4.267 26 N -0.617 5.617 27 Si 0.803 3.197 28 H -0.189 1.189 29 H -0.219 1.219 30 H -0.225 1.225 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.046 0.954 49 H 0.054 0.946 50 H 0.203 0.797 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.325 2.231 -19.750 22.875 hybrid contribution -1.092 0.272 1.187 1.636 sum 10.233 2.502 -18.563 21.344 Atomic orbital electron populations 1.21719 0.94642 1.02040 1.01727 1.20545 0.96379 0.92694 1.02745 1.19870 0.99257 0.96410 0.92860 1.21263 0.99588 0.95760 0.97341 1.21474 0.98956 0.94518 0.99027 1.21401 1.00001 1.00891 0.92015 1.21246 0.99410 0.94036 0.99573 1.18980 1.00653 0.94545 0.92042 1.20971 0.99667 1.01175 0.87991 0.88009 1.23067 0.98621 0.97359 0.98597 1.22350 0.97857 0.96766 1.01840 0.83210 1.20118 0.80172 0.86946 0.80290 1.90637 1.38358 1.46897 1.71066 1.47693 1.28587 1.21692 1.34363 1.21934 0.90569 0.91103 1.02764 1.21284 1.00288 0.86337 0.89653 0.91712 1.21971 0.95052 1.00405 1.02601 1.21194 0.89738 0.93671 0.93857 1.42515 1.28729 1.59929 1.07244 1.19662 1.06665 1.23552 0.87643 0.90508 1.25578 0.98289 1.02032 1.00839 1.69877 1.18020 1.43213 1.30544 0.85068 0.77438 0.77413 0.79778 1.18881 1.21859 1.22497 0.91926 0.94244 0.91455 0.89457 0.92673 0.84198 0.83567 0.83828 0.85090 0.85103 0.90948 0.94035 0.88733 0.88835 0.90110 0.91881 0.90188 0.95384 0.94552 0.79713 0.94265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.74 71.98 0.70 -2.49 16 2 C -0.09 -1.94 5.38 29.85 0.16 -1.78 16 3 C -0.08 -1.91 5.13 -19.87 -0.10 -2.01 16 4 C -0.12 -2.19 9.68 22.27 0.22 -1.98 16 5 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 6 C -0.13 -2.13 10.05 22.27 0.22 -1.90 16 7 C -0.12 -2.62 9.30 22.27 0.21 -2.42 16 8 C -0.06 -1.55 5.61 -19.86 -0.11 -1.66 16 9 C -0.08 -2.40 4.65 -11.54 -0.05 -2.45 16 10 H 0.10 3.60 5.47 -2.39 -0.01 3.59 16 11 C -0.14 -4.43 9.57 30.62 0.29 -4.14 16 12 C -0.17 -5.11 4.92 -11.52 -0.06 -5.17 16 13 H 0.15 3.56 6.44 -2.39 -0.02 3.54 16 14 C 0.54 20.53 7.16 87.66 0.63 21.16 16 15 O -0.59 -27.63 15.59 -3.05 -0.05 -27.67 16 16 N -0.59 -20.16 2.24 -822.59 -1.85 -22.00 16 17 C 0.08 2.03 9.43 127.77 1.20 3.23 16 18 C 0.13 4.51 2.80 44.99 0.13 4.63 16 19 H 0.06 2.73 6.90 -2.39 -0.02 2.72 16 20 C -0.14 -3.43 9.17 71.98 0.66 -2.77 16 21 C 0.14 5.83 5.55 86.38 0.48 6.31 16 22 N -0.74 -39.52 5.43 -343.47 -1.87 -41.39 16 23 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 24 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 25 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 26 N -0.97 -61.23 13.06 21.65 0.28 -60.94 16 27 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 28 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 29 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 30 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.02 7.17 -2.39 -0.02 1.01 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 35 H 0.05 1.50 6.95 -2.39 -0.02 1.49 16 36 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.13 2.48 6.03 -2.91 -0.02 2.46 16 40 H 0.13 3.34 6.18 -2.38 -0.01 3.32 16 41 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.93 6.43 -2.39 -0.02 1.91 16 44 H 0.09 1.85 6.00 -2.38 -0.01 1.84 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.08 1.60 6.66 -2.38 -0.02 1.58 16 48 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.04 1.39 7.84 -2.39 -0.02 1.37 16 50 H 0.37 21.90 7.06 -92.71 -0.65 21.24 16 51 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -75.99 405.36 4.93 -71.07 By element: Atomic # 1 Polarization: 43.66 SS G_CDS: 0.27 Total: 43.93 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 6.11 Total: -12.21 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -3.43 Total: -124.34 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.05 Total: -27.67 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -75.99 4.93 -71.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753709499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.460 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds