Wall clock time and date at job start Tue Mar 31 2020 16:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.46965 * 2 1 4 4 C 1.38257 * 120.00227 * 265.18919 * 3 2 1 5 5 C 1.38214 * 119.99812 * 180.21010 * 4 3 2 6 6 C 1.38261 * 119.99992 * 359.86126 * 5 4 3 7 7 C 1.38218 * 119.99943 * 359.95148 * 6 5 4 8 8 C 1.38218 * 119.99636 * 85.00684 * 3 2 1 9 9 C 1.50697 * 119.99962 * 359.97438 * 8 3 2 10 10 H 1.09000 * 115.55314 * 334.05457 * 9 8 3 11 11 C 1.53078 * 117.51412 * 188.33967 * 9 8 3 12 12 C 1.52992 * 117.50073 * 119.73047 * 9 8 3 13 13 H 1.09004 * 117.49943 * 359.97438 * 12 9 8 14 14 C 1.50705 * 117.50425 * 215.00131 * 12 9 8 15 15 O 1.21281 * 119.99481 * 0.08513 * 14 12 9 16 16 N 1.34774 * 120.00356 * 180.08283 * 14 12 9 17 17 C 1.46500 * 119.99685 * 0.02562 * 16 14 12 18 18 C 1.46501 * 119.99907 * 179.97438 * 16 14 12 19 19 H 1.08999 * 109.47004 * 0.02562 * 18 16 14 20 20 C 1.52999 * 109.46955 * 240.00326 * 18 16 14 21 21 C 1.52993 * 109.46854 * 120.00181 * 18 16 14 22 22 N 1.46496 * 109.47551 * 304.99739 * 21 18 16 23 23 C 1.36934 * 120.00548 * 179.97438 * 22 21 18 24 24 H 1.08004 * 119.99288 * 0.02562 * 23 22 21 25 25 C 1.38805 * 120.00389 * 180.02562 * 23 22 21 26 26 N 1.31624 * 120.00257 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47174 * 270.00277 * 27 25 23 29 29 H 1.48501 * 109.47062 * 30.00228 * 27 25 23 30 30 H 1.48499 * 109.46981 * 150.00382 * 27 25 23 31 31 H 1.09002 * 109.46823 * 299.99482 * 1 2 3 32 32 H 1.08994 * 109.47311 * 59.99550 * 1 2 3 33 33 H 1.09001 * 109.47165 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46823 * 240.00518 * 2 1 3 35 35 H 1.08994 * 109.47311 * 120.00450 * 2 1 3 36 36 H 1.08000 * 119.99880 * 0.04624 * 4 3 2 37 37 H 1.07996 * 119.99805 * 179.83348 * 5 4 3 38 38 H 1.07993 * 119.99637 * 179.97438 * 6 5 4 39 39 H 1.07996 * 119.99294 * 180.02562 * 7 6 5 40 40 H 1.08993 * 117.51807 * 145.03986 * 11 9 8 41 41 H 1.09008 * 117.49155 * 0.02562 * 11 9 8 42 42 H 1.08996 * 109.46805 * 269.99253 * 17 16 14 43 43 H 1.08995 * 109.47290 * 30.00170 * 17 16 14 44 44 H 1.09002 * 109.46754 * 149.99998 * 17 16 14 45 45 H 1.09005 * 109.47098 * 179.97438 * 20 18 16 46 46 H 1.08999 * 109.47143 * 299.99766 * 20 18 16 47 47 H 1.09001 * 109.47387 * 59.99849 * 20 18 16 48 48 H 1.09004 * 109.46862 * 184.99937 * 21 18 16 49 49 H 1.09004 * 109.46998 * 65.00415 * 21 18 16 50 50 H 0.96999 * 119.99694 * 0.02562 * 22 21 18 51 51 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3575 2.0392 -1.1931 5 6 2.8223 3.3408 -1.1926 6 6 2.9594 4.0255 0.0007 7 6 2.6307 3.4086 1.1931 8 6 2.1645 2.1071 1.1925 9 6 1.8057 1.4346 2.4925 10 1 1.0705 0.6331 2.4201 11 6 1.7852 2.3007 3.7546 12 6 2.9109 1.2869 3.5401 13 1 3.8977 1.6757 3.2888 14 6 2.9000 0.0443 4.3927 15 8 2.0371 -0.7929 4.2333 16 7 3.8491 -0.1366 5.3323 17 6 4.8911 0.8750 5.5251 18 6 3.8382 -1.3444 6.1615 19 1 2.9956 -1.9739 5.8753 20 6 3.7045 -0.9508 7.6339 21 6 5.1434 -2.1157 5.9562 22 7 5.3301 -2.3887 4.5291 23 6 6.4372 -3.0719 4.1016 24 1 7.1726 -3.4098 4.8168 25 6 6.6143 -3.3301 2.7494 26 7 7.6782 -3.9872 2.3386 27 14 5.3419 -2.7463 1.5125 28 1 4.3134 -3.8009 1.3252 29 1 4.6950 -1.5076 2.0151 30 1 6.0059 -2.4663 0.2141 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.2507 1.5042 -2.1252 37 1 3.0788 3.8229 -2.1244 38 1 3.3229 5.0424 0.0010 39 1 2.7374 3.9436 2.1251 40 1 1.0368 2.0690 4.5123 41 1 2.0310 3.3569 3.6441 42 1 5.7417 0.6474 4.8827 43 1 4.4952 1.8577 5.2694 44 1 5.2117 0.8723 6.5670 45 1 3.6959 -1.8494 8.2509 46 1 4.5473 -0.3215 7.9198 47 1 2.7746 -0.4012 7.7802 48 1 5.0988 -3.0574 6.5034 49 1 5.9790 -1.5205 6.3247 50 1 4.6697 -2.0849 3.8868 51 1 7.8018 -4.1680 1.3936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753709500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:54 Heat of formation + Delta-G solvation = 23.538632 kcal Electronic energy + Delta-G solvation = -29413.654549 eV Core-core repulsion = 25699.936584 eV Total energy + Delta-G solvation = -3713.717965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52568 -39.49134 -37.12343 -35.87896 -34.25882 -34.10447 -31.97374 -30.72472 -30.38787 -29.39796 -26.76827 -25.94059 -24.84111 -24.00834 -23.79518 -22.08952 -21.16488 -20.75219 -20.05180 -18.74675 -17.60504 -17.50605 -16.51143 -16.23594 -15.49502 -15.24590 -15.07081 -14.64445 -14.25611 -14.09123 -14.00694 -13.83016 -13.55363 -13.27765 -12.96396 -12.85733 -12.62926 -12.59407 -12.43892 -12.32833 -12.10498 -12.01010 -11.90404 -11.84577 -11.72938 -11.46416 -10.95374 -10.92669 -10.87766 -10.79933 -10.62062 -10.51897 -10.47760 -10.07050 -9.58406 -9.56628 -8.87854 -8.85556 -8.54303 -8.37698 -7.19402 -5.74594 -3.09064 1.20662 1.30661 2.65455 3.13788 3.42807 3.48563 3.51147 3.54629 3.96997 4.38114 4.61136 4.63682 4.71636 4.74398 4.77473 4.90073 4.93695 5.08782 5.13049 5.18050 5.25665 5.31389 5.34422 5.40524 5.43187 5.47695 5.53069 5.54721 5.56728 5.64212 5.78145 5.82164 5.85590 5.87869 5.90871 5.96012 5.99352 6.01120 6.06240 6.10917 6.23242 6.25005 6.39207 6.41398 6.44511 6.63388 6.63974 6.87769 6.92041 7.60177 8.01643 8.39116 8.45086 9.24849 9.97918 10.18354 11.43648 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009828 B = 0.004706 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.382415 B = 5948.741848 C = 7446.808208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.065 4.065 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.117 4.117 8 C -0.050 4.050 9 C -0.087 4.087 10 H 0.129 0.871 11 C -0.145 4.145 12 C -0.173 4.173 13 H 0.125 0.875 14 C 0.545 3.455 15 O -0.543 6.543 16 N -0.595 5.595 17 C 0.078 3.922 18 C 0.121 3.879 19 H 0.100 0.900 20 C -0.154 4.154 21 C 0.149 3.851 22 N -0.752 5.752 23 C -0.242 4.242 24 H 0.090 0.910 25 C 0.007 3.993 26 N -0.934 5.934 27 Si 0.879 3.121 28 H -0.284 1.284 29 H -0.276 1.276 30 H -0.291 1.291 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.037 0.963 49 H 0.028 0.972 50 H 0.363 0.637 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 18.403 1.124 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C -0.065 4.065 4 C -0.135 4.135 5 C -0.139 4.139 6 C -0.143 4.143 7 C -0.135 4.135 8 C -0.050 4.050 9 C -0.105 4.105 10 H 0.147 0.853 11 C -0.182 4.182 12 C -0.194 4.194 13 H 0.143 0.857 14 C 0.333 3.667 15 O -0.421 6.421 16 N -0.327 5.327 17 C -0.065 4.065 18 C 0.018 3.982 19 H 0.118 0.882 20 C -0.213 4.213 21 C 0.021 3.979 22 N -0.398 5.398 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.582 5.582 27 Si 0.710 3.290 28 H -0.210 1.210 29 H -0.202 1.202 30 H -0.218 1.218 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.046 0.954 50 H 0.197 0.803 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.362 17.818 1.066 22.297 hybrid contribution -0.418 0.385 -1.053 1.196 sum -13.780 18.203 0.014 22.831 Atomic orbital electron populations 1.21721 0.94513 1.01919 1.01870 1.20654 0.96381 0.92618 1.03715 1.19752 0.98271 0.96091 0.92436 1.21042 0.99831 0.95165 0.97438 1.21112 0.99918 0.94829 0.98070 1.21060 1.00800 0.99889 0.92505 1.21008 0.99711 0.94501 0.98283 1.18968 0.99499 0.93733 0.92766 1.21140 1.00582 1.01605 0.87156 0.85302 1.23112 0.99304 0.96235 0.99565 1.22374 0.96976 0.97832 1.02264 0.85682 1.19531 0.81022 0.86626 0.79555 1.90667 1.37752 1.44934 1.68765 1.47627 1.27868 1.21340 1.35832 1.21775 0.91496 0.90611 1.02632 1.21469 1.00961 0.85965 0.89784 0.88187 1.22047 1.01751 1.02119 0.95371 1.20977 0.93248 0.96442 0.87269 1.42648 1.26319 1.68873 1.01934 1.19044 0.98348 1.27175 0.92654 0.89236 1.24620 0.97308 1.00344 0.96620 1.69703 1.28167 1.45565 1.14796 0.86604 0.81700 0.79024 0.81689 1.21026 1.20219 1.21794 0.92422 0.92781 0.92207 0.90991 0.90110 0.86055 0.86200 0.86167 0.85939 0.87867 0.87549 0.91706 0.91457 0.90930 0.91193 0.92181 0.92599 0.94569 0.95376 0.80348 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.74 37.16 0.36 -1.27 16 2 C -0.10 -1.31 5.38 -27.88 -0.15 -1.46 16 3 C -0.07 -0.88 5.13 -104.62 -0.54 -1.42 16 4 C -0.12 -1.40 9.68 -39.58 -0.38 -1.78 16 5 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 6 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 7 C -0.12 -1.30 9.30 -39.58 -0.37 -1.67 16 8 C -0.05 -0.64 5.61 -104.63 -0.59 -1.23 16 9 C -0.09 -1.15 4.66 -91.74 -0.43 -1.58 16 10 H 0.13 1.90 5.47 -51.93 -0.28 1.61 16 11 C -0.14 -1.53 9.57 -26.69 -0.26 -1.79 16 12 C -0.17 -2.41 4.42 -91.77 -0.41 -2.81 16 13 H 0.13 1.68 7.27 -51.93 -0.38 1.30 16 14 C 0.54 9.34 7.16 -10.98 -0.08 9.26 16 15 O -0.54 -11.03 15.59 5.56 0.09 -10.95 16 16 N -0.59 -9.41 2.24 -173.94 -0.39 -9.80 16 17 C 0.08 0.99 9.17 59.85 0.55 1.54 16 18 C 0.12 1.98 2.80 -67.93 -0.19 1.79 16 19 H 0.10 1.85 6.90 -51.93 -0.36 1.49 16 20 C -0.15 -1.86 9.17 37.16 0.34 -1.52 16 21 C 0.15 2.91 5.56 -4.05 -0.02 2.89 16 22 N -0.75 -18.71 5.24 -59.91 -0.31 -19.03 16 23 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 24 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 25 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 26 N -0.93 -30.07 13.97 55.49 0.78 -29.30 16 27 Si 0.88 23.66 27.74 -169.99 -4.71 18.94 16 28 H -0.28 -7.70 7.11 56.52 0.40 -7.29 16 29 H -0.28 -7.21 6.52 56.52 0.37 -6.84 16 30 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 31 H 0.06 0.65 7.17 -51.93 -0.37 0.28 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.08 1.30 6.95 -51.93 -0.36 0.94 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.12 1.10 6.02 -52.49 -0.32 0.78 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.11 0.87 6.18 -51.92 -0.32 0.55 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.68 6.64 -51.93 -0.35 0.33 16 44 H 0.07 0.78 6.42 -51.93 -0.33 0.44 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.65 6.66 -51.93 -0.35 0.30 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.03 0.54 7.84 -51.93 -0.41 0.13 16 50 H 0.36 9.29 4.92 -40.82 -0.20 9.09 16 51 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 LS Contribution 402.96 15.07 6.07 6.07 Total: -1.00 -35.20 402.96 -9.95 -45.15 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -8.26 Total: 10.45 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.20 Total: -11.54 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.07 Total: -58.13 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.71 Total: 18.94 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.20 -9.95 -45.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753709500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.686 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds