Wall clock time and date at job start Tue Mar 31 2020 16:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47149 * 2 1 4 4 C 1.38253 * 119.99748 * 265.73543 * 3 2 1 5 5 C 1.38218 * 119.99855 * 180.22695 * 4 3 2 6 6 C 1.38258 * 119.99732 * 359.81890 * 5 4 3 7 7 C 1.38211 * 120.00387 * 359.97342 * 6 5 4 8 8 C 1.38221 * 120.00154 * 85.52850 * 3 2 1 9 9 C 1.50699 * 119.99813 * 359.97438 * 8 3 2 10 10 H 1.08999 * 109.47564 * 316.22351 * 9 8 3 11 11 C 1.52997 * 109.46929 * 196.21883 * 9 8 3 12 12 N 1.46504 * 109.46884 * 181.84546 * 11 9 8 13 13 C 1.34780 * 119.99558 * 180.02562 * 12 11 9 14 14 O 1.21277 * 120.00477 * 359.97438 * 13 12 11 15 15 C 1.50708 * 119.99637 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.46962 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47032 * 179.97438 * 16 15 13 18 18 C 1.53001 * 117.49551 * 243.75001 * 17 16 15 19 19 C 1.52996 * 117.49813 * 175.08894 * 17 16 15 20 20 N 1.46502 * 109.47002 * 76.22044 * 9 8 3 21 21 C 1.36941 * 119.99938 * 57.06027 * 20 9 8 22 22 H 1.07998 * 119.99861 * 354.28904 * 21 20 9 23 23 C 1.38814 * 119.99966 * 174.28192 * 21 20 9 24 24 N 1.31614 * 119.99599 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00083 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.46925 * 89.99728 * 25 23 21 27 27 H 1.48498 * 109.47501 * 209.99754 * 25 23 21 28 28 H 1.48501 * 109.47107 * 330.00248 * 25 23 21 29 29 H 1.09001 * 109.47332 * 185.32957 * 1 2 3 30 30 H 1.08994 * 109.47712 * 305.33484 * 1 2 3 31 31 H 1.09002 * 109.46581 * 65.34180 * 1 2 3 32 32 H 1.09000 * 109.47925 * 239.99466 * 2 1 3 33 33 H 1.09009 * 109.46964 * 119.99314 * 2 1 3 34 34 H 1.07997 * 120.00259 * 0.06805 * 4 3 2 35 35 H 1.08002 * 119.99944 * 179.83044 * 5 4 3 36 36 H 1.08004 * 119.99984 * 179.97438 * 6 5 4 37 37 H 1.08002 * 119.99969 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47463 * 301.84478 * 11 9 8 39 39 H 1.08997 * 109.47011 * 61.84616 * 11 9 8 40 40 H 0.96998 * 119.99992 * 359.97438 * 12 11 9 41 41 H 1.08997 * 109.47049 * 300.00005 * 15 13 12 42 42 H 1.08997 * 109.47128 * 59.99961 * 15 13 12 43 43 H 1.08997 * 109.47463 * 300.00021 * 16 15 13 44 44 H 1.09006 * 109.47115 * 59.99947 * 16 15 13 45 45 H 1.08994 * 115.55052 * 29.41412 * 17 16 15 46 46 H 1.08994 * 117.50360 * 359.97438 * 18 17 16 47 47 H 1.09002 * 117.49502 * 145.02440 * 18 17 16 48 48 H 1.09002 * 117.49999 * 214.98058 * 19 17 16 49 49 H 1.09002 * 117.50249 * 359.97438 * 19 17 16 50 50 H 0.97002 * 120.00239 * 237.06462 * 20 9 8 51 51 H 0.97007 * 119.99549 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3466 2.0428 -1.1940 5 6 2.8118 3.3443 -1.1937 6 6 2.9592 4.0254 0.0004 7 6 2.6409 3.4051 1.1938 8 6 2.1747 2.1035 1.1934 9 6 1.8270 1.4272 2.4944 10 1 0.8880 0.8852 2.3827 11 6 1.6800 2.4812 3.5937 12 7 1.3854 1.8203 4.8676 13 6 1.2134 2.5555 5.9841 14 8 1.3029 3.7639 5.9343 15 6 0.9098 1.8757 7.2944 16 6 0.7629 2.9297 8.3937 17 6 0.4541 2.2396 9.7239 18 6 -0.8984 2.5348 10.3755 19 6 0.3840 3.1170 10.9753 20 7 2.8922 0.4889 2.8569 21 6 4.1800 0.9342 2.9926 22 1 4.4273 1.9555 2.7433 23 6 5.1676 0.0729 3.4507 24 7 6.4052 0.5011 3.5816 25 14 4.7399 -1.6937 3.8813 26 1 4.8999 -2.5491 2.6780 27 1 5.6463 -2.1749 4.9547 28 1 3.3336 -1.7616 4.3534 29 1 -0.3634 -1.0232 0.0955 30 1 -0.3634 0.5943 0.8383 31 1 -0.3632 0.4288 -0.9340 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2312 1.5109 -2.1268 35 1 3.0600 3.8293 -2.1262 36 1 3.3231 5.0423 0.0008 37 1 2.7556 3.9373 2.1265 38 1 2.6085 3.0450 3.6830 39 1 0.8658 3.1599 3.3396 40 1 1.3135 0.8538 4.9073 41 1 -0.0186 1.3119 7.2047 42 1 1.7239 1.1970 7.5488 43 1 1.6916 3.4932 8.4833 44 1 -0.0510 3.6088 8.1395 45 1 0.8581 1.2336 9.8365 46 1 -1.5679 3.2208 9.8568 47 1 -1.3838 1.7230 10.9172 48 1 0.7417 2.6881 11.9114 49 1 0.5583 4.1858 10.8511 50 1 2.6852 -0.4478 3.0007 51 1 7.0953 -0.1007 3.9020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754784191.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:29 Heat of formation + Delta-G solvation = -8.927930 kcal Electronic energy + Delta-G solvation = -28584.449742 eV Core-core repulsion = 24869.323921 eV Total energy + Delta-G solvation = -3715.125821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.06353 -40.37583 -38.40423 -37.49886 -35.21201 -34.87598 -33.71928 -33.01078 -31.81910 -30.17069 -28.95943 -26.55267 -25.39448 -24.41891 -23.87022 -23.20164 -21.80543 -21.37566 -21.25324 -20.79379 -19.96667 -17.97335 -17.48835 -16.99946 -16.84583 -16.51055 -16.36622 -16.15273 -15.88916 -15.72402 -15.07512 -14.84233 -14.78246 -14.41494 -14.27584 -14.22225 -14.00429 -13.83573 -13.74073 -13.19720 -13.01678 -12.94941 -12.86281 -12.54876 -12.44872 -12.36627 -12.22582 -12.11305 -12.09001 -11.97669 -11.72532 -11.67801 -11.31483 -11.21367 -10.98681 -10.80545 -10.70527 -9.93832 -9.61536 -9.43284 -9.22702 -7.92892 -5.29564 0.59323 0.62025 1.39632 1.45508 1.52846 1.74122 2.35587 2.54815 2.93066 2.93809 3.37469 3.69224 3.74446 3.85500 3.89192 4.04193 4.06893 4.07915 4.10785 4.19091 4.30386 4.33770 4.37174 4.42252 4.45632 4.61283 4.63238 4.70522 4.72612 4.77290 4.81516 4.82971 4.88443 5.05129 5.07068 5.07304 5.15562 5.17043 5.19353 5.27982 5.29689 5.35490 5.43852 5.51229 5.56969 5.69951 5.75651 5.87758 5.92518 6.26920 6.27540 6.68605 7.14089 7.36723 7.82406 8.05445 9.28846 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.003508 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.402887 B = 7980.098945 C = 9201.849347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.073 4.073 4 C -0.131 4.131 5 C -0.128 4.128 6 C -0.141 4.141 7 C -0.130 4.130 8 C -0.085 4.085 9 C 0.210 3.790 10 H 0.107 0.893 11 C 0.118 3.882 12 N -0.704 5.704 13 C 0.501 3.499 14 O -0.597 6.597 15 C -0.128 4.128 16 C -0.068 4.068 17 C -0.159 4.159 18 C -0.173 4.173 19 C -0.188 4.188 20 N -0.728 5.728 21 C -0.204 4.204 22 H 0.049 0.951 23 C -0.064 4.064 24 N -0.989 5.989 25 Si 0.948 3.052 26 H -0.285 1.285 27 H -0.309 1.309 28 H -0.232 1.232 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.033 0.967 39 H 0.062 0.938 40 H 0.409 0.591 41 H 0.123 0.877 42 H 0.104 0.896 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.116 0.884 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.087 0.913 50 H 0.372 0.628 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.253 -1.914 1.405 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 C -0.074 4.074 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.159 4.159 7 C -0.148 4.148 8 C -0.087 4.087 9 C 0.102 3.898 10 H 0.125 0.875 11 C -0.008 4.008 12 N -0.354 5.354 13 C 0.290 3.710 14 O -0.479 6.479 15 C -0.167 4.167 16 C -0.106 4.106 17 C -0.177 4.177 18 C -0.209 4.209 19 C -0.225 4.225 20 N -0.370 5.370 21 C -0.335 4.335 22 H 0.067 0.933 23 C -0.255 4.255 24 N -0.640 5.640 25 Si 0.776 3.224 26 H -0.212 1.212 27 H -0.237 1.237 28 H -0.155 1.155 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.146 0.854 37 H 0.122 0.878 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.245 0.755 41 H 0.141 0.859 42 H 0.122 0.878 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.134 0.866 46 H 0.111 0.889 47 H 0.126 0.874 48 H 0.123 0.877 49 H 0.105 0.895 50 H 0.206 0.794 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -18.041 -0.955 1.385 18.120 hybrid contribution 1.116 -0.844 0.260 1.423 sum -16.925 -1.799 1.644 17.100 Atomic orbital electron populations 1.21712 0.93164 1.02471 1.02193 1.20602 0.97179 0.91754 1.03070 1.19904 0.98582 0.96639 0.92281 1.21268 1.00278 0.95392 0.97897 1.21338 0.99821 0.95175 0.98239 1.21291 1.01116 1.00698 0.92802 1.21229 0.99678 0.95778 0.98157 1.20199 0.99241 0.93666 0.95638 1.19462 0.91895 0.89959 0.88517 0.87536 1.21693 0.98791 0.95909 0.84405 1.45744 1.70622 1.11038 1.07966 1.21413 0.75531 0.87320 0.86783 1.90641 1.53647 1.16528 1.87063 1.21662 1.05544 0.99573 0.89942 1.20807 1.01396 0.96485 0.91921 1.22319 1.02119 1.00635 0.92656 1.23122 0.90440 1.03686 1.03697 1.23050 1.02585 0.99474 0.97368 1.42558 1.03941 1.06837 1.83653 1.18715 0.84645 0.96406 1.33695 0.93312 1.25456 0.95143 1.02457 1.02429 1.69919 1.02103 1.36813 1.55188 0.85525 0.79092 0.80573 0.77235 1.21197 1.23672 1.15503 0.90966 0.92763 0.92159 0.90823 0.91355 0.84283 0.84043 0.85436 0.87771 0.94879 0.91946 0.75463 0.85894 0.87819 0.93354 0.92170 0.86602 0.88917 0.87396 0.87745 0.89457 0.79388 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.72 71.98 0.70 -2.01 16 2 C -0.09 -2.30 5.42 29.85 0.16 -2.14 16 3 C -0.07 -2.30 5.13 -19.87 -0.10 -2.40 16 4 C -0.13 -3.74 9.68 22.27 0.22 -3.52 16 5 C -0.13 -3.67 10.05 22.27 0.22 -3.44 16 6 C -0.14 -4.60 10.05 22.27 0.22 -4.38 16 7 C -0.13 -4.82 8.64 22.27 0.19 -4.62 16 8 C -0.08 -3.00 4.62 -19.87 -0.09 -3.09 16 9 C 0.21 7.06 2.20 44.24 0.10 7.16 16 10 H 0.11 2.87 6.14 -2.39 -0.01 2.86 16 11 C 0.12 4.26 3.93 86.38 0.34 4.60 16 12 N -0.70 -22.39 5.41 -463.05 -2.51 -24.89 16 13 C 0.50 16.59 7.83 87.66 0.69 17.28 16 14 O -0.60 -24.97 15.98 -3.02 -0.05 -25.01 16 15 C -0.13 -2.96 5.66 29.85 0.17 -2.79 16 16 C -0.07 -1.64 4.79 30.59 0.15 -1.49 16 17 C -0.16 -2.95 5.73 -10.79 -0.06 -3.01 16 18 C -0.17 -2.71 10.18 30.62 0.31 -2.40 16 19 C -0.19 -3.25 10.25 30.62 0.31 -2.94 16 20 N -0.73 -29.08 3.81 -326.50 -1.24 -30.32 16 21 C -0.20 -10.72 9.24 84.03 0.78 -9.95 16 22 H 0.05 2.99 7.21 -2.91 -0.02 2.97 16 23 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 24 N -0.99 -62.87 13.97 21.65 0.30 -62.57 16 25 Si 0.95 42.25 27.68 68.60 1.90 44.14 16 26 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 27 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 28 H -0.23 -8.46 6.60 99.48 0.66 -7.81 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.08 6.85 -2.39 -0.02 1.06 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.76 8.06 -2.39 -0.02 1.74 16 33 H 0.07 1.97 6.23 -2.38 -0.01 1.95 16 34 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 35 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 37 H 0.10 4.12 5.91 -2.91 -0.02 4.11 16 38 H 0.03 1.49 6.16 -2.39 -0.01 1.47 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.41 11.04 8.25 -92.71 -0.76 10.27 16 41 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 44 H 0.06 1.54 7.83 -2.38 -0.02 1.52 16 45 H 0.12 1.90 8.07 -2.39 -0.02 1.88 16 46 H 0.09 1.47 8.03 -2.39 -0.02 1.45 16 47 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 48 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.37 13.67 5.73 -92.71 -0.53 13.14 16 51 H 0.25 15.46 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -73.95 406.49 2.76 -71.19 By element: Atomic # 1 Polarization: 50.19 SS G_CDS: -0.42 Total: 49.77 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 4.77 Total: -22.30 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -3.45 Total: -117.79 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.01 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.90 Total: 44.14 kcal Total: -73.95 2.76 -71.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754784191.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.261 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds