Wall clock time and date at job start Tue Mar 31 2020 16:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47200 * 2 1 4 4 C 1.38263 * 119.99621 * 264.99689 * 3 2 1 5 5 C 1.38209 * 119.99863 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99796 * 359.97231 * 5 4 3 7 7 C 1.38208 * 120.00567 * 359.96225 * 6 5 4 8 8 C 1.38212 * 120.00264 * 84.72640 * 3 2 1 9 9 C 1.50697 * 120.00088 * 359.97438 * 8 3 2 10 10 H 1.09001 * 109.47360 * 41.91994 * 9 8 3 11 11 C 1.52997 * 109.47262 * 161.92330 * 9 8 3 12 12 N 1.46500 * 109.47036 * 175.00019 * 11 9 8 13 13 C 1.34778 * 119.99950 * 180.02562 * 12 11 9 14 14 O 1.21283 * 119.99873 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99837 * 180.02562 * 13 12 11 16 16 C 1.53010 * 109.46945 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.46956 * 179.97438 * 16 15 13 18 18 C 1.53004 * 117.49850 * 243.74680 * 17 16 15 19 19 C 1.52998 * 117.49606 * 175.09230 * 17 16 15 20 20 N 1.46500 * 109.46916 * 281.92124 * 9 8 3 21 21 C 1.36940 * 120.00340 * 303.84109 * 20 9 8 22 22 H 1.08004 * 119.99579 * 5.16608 * 21 20 9 23 23 C 1.38810 * 119.99997 * 185.16870 * 21 20 9 24 24 N 1.31612 * 120.00246 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99581 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47198 * 60.00172 * 25 23 21 27 27 H 1.48502 * 109.47137 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47501 * 300.00123 * 25 23 21 29 29 H 1.08998 * 109.46867 * 60.00083 * 1 2 3 30 30 H 1.08994 * 109.47643 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46665 * 300.00540 * 1 2 3 32 32 H 1.09005 * 109.46677 * 119.99603 * 2 1 3 33 33 H 1.08999 * 109.46665 * 239.99460 * 2 1 3 34 34 H 1.07996 * 120.00204 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.00245 * 179.97438 * 5 4 3 36 36 H 1.08009 * 119.99589 * 179.97438 * 6 5 4 37 37 H 1.07994 * 120.00496 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47293 * 294.99801 * 11 9 8 39 39 H 1.08997 * 109.47381 * 54.99632 * 11 9 8 40 40 H 0.96993 * 120.00495 * 359.97438 * 12 11 9 41 41 H 1.09002 * 109.47125 * 299.98996 * 15 13 12 42 42 H 1.08997 * 109.47224 * 59.99870 * 15 13 12 43 43 H 1.08998 * 109.46967 * 300.00136 * 16 15 13 44 44 H 1.09007 * 109.46875 * 60.00105 * 16 15 13 45 45 H 1.09001 * 115.55148 * 29.41501 * 17 16 15 46 46 H 1.09003 * 117.49738 * 0.02562 * 18 17 16 47 47 H 1.08993 * 117.50220 * 145.02195 * 18 17 16 48 48 H 1.09004 * 117.49955 * 214.98102 * 19 17 16 49 49 H 1.09002 * 117.50275 * 359.97438 * 19 17 16 50 50 H 0.97005 * 120.00191 * 123.83921 * 20 9 8 51 51 H 0.97006 * 120.00366 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0377 -1.1929 5 6 2.8225 3.3405 -1.1929 6 6 2.9544 4.0271 -0.0001 7 6 2.6244 3.4110 1.1922 8 6 2.1591 2.1090 1.1918 9 6 1.7943 1.4389 2.4914 10 1 2.1630 0.4131 2.4873 11 6 2.4277 2.2039 3.6551 12 7 1.9769 1.6249 4.9231 13 6 2.4087 2.1411 6.0909 14 8 3.1708 3.0846 6.0920 15 6 1.9454 1.5451 7.3952 16 6 2.5788 2.3102 8.5591 17 6 2.1080 1.7056 9.8833 18 6 1.2726 2.5934 10.8079 19 6 2.7217 2.2596 11.1706 20 7 0.3374 1.4335 2.6459 21 6 -0.3604 2.6109 2.5998 22 1 0.1512 3.5330 2.3666 23 6 -1.7253 2.6190 2.8526 24 7 -2.3488 1.4952 3.1363 25 14 -2.6769 4.2252 2.7904 26 1 -2.5599 4.8177 1.4337 27 1 -4.1068 3.9655 3.0959 28 1 -2.1207 5.1694 3.7925 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 2.2585 1.5012 -2.1245 35 1 3.0798 3.8223 -2.1246 36 1 3.3153 5.0451 -0.0001 37 1 2.7271 3.9474 2.1238 38 1 3.5133 2.1326 3.5888 39 1 2.1288 3.2510 3.6072 40 1 1.3672 0.8706 4.9223 41 1 0.8597 1.6157 7.4616 42 1 2.2452 0.4982 7.4431 43 1 3.6644 2.2394 8.4924 44 1 2.2793 3.3573 8.5113 45 1 1.8697 0.6423 9.8562 46 1 1.0581 3.6081 10.4725 47 1 0.4851 2.1142 11.3894 48 1 2.8870 1.5608 11.9907 49 1 3.4612 3.0546 11.0742 50 1 -0.1329 0.5959 2.7809 51 1 -3.3025 1.5010 3.3133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754784200.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:33 Heat of formation + Delta-G solvation = 9.178607 kcal Electronic energy + Delta-G solvation = -28722.336309 eV Core-core repulsion = 25007.995646 eV Total energy + Delta-G solvation = -3714.340663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.65792 -39.02998 -37.50212 -35.90090 -33.80897 -33.16885 -32.22570 -31.67577 -29.72608 -28.84305 -27.30257 -25.05965 -23.97480 -23.17366 -22.55791 -22.43790 -20.60900 -20.29766 -19.90022 -19.36731 -17.47493 -16.63763 -16.00371 -15.81936 -15.57352 -15.25182 -15.00921 -14.73898 -14.34837 -14.05269 -14.01652 -13.46138 -13.20598 -13.13792 -13.05701 -12.69526 -12.53545 -12.36335 -11.98550 -11.97643 -11.64405 -11.59794 -11.26378 -11.19802 -11.15981 -11.14118 -11.01719 -10.84286 -10.69942 -10.35728 -10.28128 -10.10085 -9.91426 -9.90631 -9.70208 -9.37186 -8.96539 -8.41303 -8.27337 -8.06297 -7.09397 -5.86330 -3.16609 1.90012 1.91854 3.13353 3.40910 3.45012 3.47789 3.65668 3.80141 4.26108 4.55965 4.65596 4.83609 4.87956 5.06324 5.21062 5.27864 5.32981 5.37816 5.41605 5.47359 5.53261 5.54929 5.55863 5.61439 5.68230 5.75355 5.79659 5.84792 5.87012 5.98309 6.02230 6.03811 6.08378 6.10403 6.13130 6.19119 6.36948 6.39520 6.46440 6.53361 6.58835 6.63784 6.68554 6.95890 6.98150 7.10431 7.26229 7.36499 7.54053 7.69574 8.09571 8.29468 8.75484 9.43487 9.89103 10.26542 11.34868 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.003501 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.520934 B = 7995.638684 C = 9204.516703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.075 4.075 3 C -0.063 4.063 4 C -0.125 4.125 5 C -0.131 4.131 6 C -0.130 4.130 7 C -0.111 4.111 8 C -0.061 4.061 9 C 0.197 3.803 10 H 0.071 0.929 11 C 0.108 3.892 12 N -0.703 5.703 13 C 0.509 3.491 14 O -0.560 6.560 15 C -0.137 4.137 16 C -0.071 4.071 17 C -0.152 4.152 18 C -0.182 4.182 19 C -0.183 4.183 20 N -0.704 5.704 21 C -0.233 4.233 22 H 0.070 0.930 23 C -0.003 4.003 24 N -0.930 5.930 25 Si 0.898 3.102 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.403 0.597 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.387 0.613 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.682 -3.723 3.780 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.113 4.113 3 C -0.064 4.064 4 C -0.143 4.143 5 C -0.149 4.149 6 C -0.149 4.149 7 C -0.130 4.130 8 C -0.064 4.064 9 C 0.086 3.914 10 H 0.089 0.911 11 C -0.019 4.019 12 N -0.353 5.353 13 C 0.295 3.705 14 O -0.440 6.440 15 C -0.177 4.177 16 C -0.109 4.109 17 C -0.170 4.170 18 C -0.219 4.219 19 C -0.220 4.220 20 N -0.345 5.345 21 C -0.364 4.364 22 H 0.088 0.912 23 C -0.199 4.199 24 N -0.578 5.578 25 Si 0.730 3.270 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.238 0.762 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.122 0.878 46 H 0.113 0.887 47 H 0.110 0.890 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.223 0.777 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.101 -2.911 3.784 11.173 hybrid contribution -1.270 0.475 -0.208 1.372 sum 8.831 -2.436 3.576 9.835 Atomic orbital electron populations 1.22089 0.93561 1.01063 1.05515 1.20454 0.97389 0.92335 1.01078 1.19659 0.97858 0.96418 0.92470 1.20882 1.01045 0.95261 0.97124 1.20936 1.01504 0.94983 0.97511 1.21010 1.01616 0.99376 0.92858 1.21172 0.98908 0.94872 0.98013 1.20245 0.96167 0.94265 0.95737 1.19372 0.86861 0.96246 0.88901 0.91131 1.21932 0.96874 0.99206 0.83859 1.45751 1.48449 1.35704 1.05357 1.20572 0.80777 0.83448 0.85665 1.90646 1.36776 1.28551 1.87994 1.21622 1.02894 1.00863 0.92355 1.20893 1.00513 0.99370 0.90139 1.22376 1.04259 0.98987 0.91348 1.23056 0.94028 1.01009 1.03798 1.22960 0.96531 1.03784 0.98770 1.42458 0.98987 1.07554 1.85488 1.19030 0.90380 0.87244 1.39716 0.91183 1.24627 0.96710 0.96540 1.02025 1.69612 1.09354 1.24617 1.54204 0.86402 0.79151 0.83607 0.77880 1.21285 1.21777 1.21327 0.94028 0.94014 0.87029 0.91573 0.92804 0.87044 0.87117 0.86999 0.86071 0.92926 0.91200 0.76232 0.88693 0.89334 0.91056 0.91142 0.87783 0.88719 0.89019 0.89071 0.88847 0.77676 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.88 37.16 0.37 -2.51 16 2 C -0.08 -1.15 5.56 -27.88 -0.16 -1.31 16 3 C -0.06 -1.07 5.13 -104.62 -0.54 -1.60 16 4 C -0.13 -1.95 9.68 -39.58 -0.38 -2.34 16 5 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 6 C -0.13 -2.07 10.05 -39.59 -0.40 -2.46 16 7 C -0.11 -1.94 8.52 -39.58 -0.34 -2.27 16 8 C -0.06 -1.09 4.60 -104.62 -0.48 -1.57 16 9 C 0.20 3.44 2.45 -69.09 -0.17 3.27 16 10 H 0.07 1.11 6.56 -51.93 -0.34 0.77 16 11 C 0.11 1.90 4.11 -4.04 -0.02 1.88 16 12 N -0.70 -11.73 5.39 -60.30 -0.32 -12.05 16 13 C 0.51 8.61 7.83 -10.98 -0.09 8.52 16 14 O -0.56 -11.33 15.98 5.55 0.09 -11.24 16 15 C -0.14 -1.77 5.66 -27.88 -0.16 -1.93 16 16 C -0.07 -0.89 4.79 -26.73 -0.13 -1.02 16 17 C -0.15 -1.58 5.73 -90.62 -0.52 -2.10 16 18 C -0.18 -1.83 10.18 -26.69 -0.27 -2.10 16 19 C -0.18 -1.74 10.25 -26.70 -0.27 -2.01 16 20 N -0.70 -14.60 2.73 -54.55 -0.15 -14.75 16 21 C -0.23 -5.71 8.65 -15.06 -0.13 -5.84 16 22 H 0.07 1.79 6.93 -52.48 -0.36 1.42 16 23 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 24 N -0.93 -25.26 13.06 55.49 0.72 -24.54 16 25 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 2.33 4.71 -51.93 -0.24 2.08 16 32 H 0.07 0.96 6.38 -51.93 -0.33 0.63 16 33 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.12 2.11 5.84 -52.49 -0.31 1.81 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.42 6.05 -51.93 -0.31 1.10 16 40 H 0.40 6.34 8.14 -40.82 -0.33 6.01 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 44 H 0.07 0.99 7.83 -51.92 -0.41 0.58 16 45 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 46 H 0.09 0.99 8.03 -51.93 -0.42 0.57 16 47 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.39 8.49 7.20 -40.82 -0.29 8.19 16 51 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 406.19 15.07 6.12 6.12 Total: -1.00 -28.68 406.19 -11.13 -39.81 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -8.39 Total: 17.80 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -4.17 Total: -17.95 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.25 Total: -51.34 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.68 -11.13 -39.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754784200.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.989 kcal (2) G-P(sol) polarization free energy of solvation -28.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds