Wall clock time and date at job start Tue Mar 31 2020 16:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50697 * 109.47200 * 2 1 4 4 C 1.38263 * 119.99621 * 264.99689 * 3 2 1 5 5 C 1.38209 * 119.99863 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99796 * 359.97231 * 5 4 3 7 7 C 1.38208 * 120.00567 * 359.96225 * 6 5 4 8 8 C 1.38212 * 120.00264 * 84.72640 * 3 2 1 9 9 C 1.50697 * 120.00088 * 359.97438 * 8 3 2 10 10 H 1.09001 * 109.47360 * 41.91994 * 9 8 3 11 11 C 1.52997 * 109.47262 * 161.92330 * 9 8 3 12 12 N 1.46500 * 109.47036 * 175.00019 * 11 9 8 13 13 C 1.34778 * 119.99950 * 180.02562 * 12 11 9 14 14 O 1.21283 * 119.99873 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99837 * 180.02562 * 13 12 11 16 16 C 1.53010 * 109.46945 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.46956 * 179.97438 * 16 15 13 18 18 C 1.53004 * 117.49850 * 243.74680 * 17 16 15 19 19 C 1.52998 * 117.49606 * 175.09230 * 17 16 15 20 20 N 1.46500 * 109.46916 * 281.92124 * 9 8 3 21 21 C 1.36940 * 120.00340 * 303.84109 * 20 9 8 22 22 H 1.08004 * 119.99579 * 5.16608 * 21 20 9 23 23 C 1.38810 * 119.99997 * 185.16870 * 21 20 9 24 24 N 1.31612 * 120.00246 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99581 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47198 * 60.00172 * 25 23 21 27 27 H 1.48502 * 109.47137 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47501 * 300.00123 * 25 23 21 29 29 H 1.08998 * 109.46867 * 60.00083 * 1 2 3 30 30 H 1.08994 * 109.47643 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46665 * 300.00540 * 1 2 3 32 32 H 1.09005 * 109.46677 * 119.99603 * 2 1 3 33 33 H 1.08999 * 109.46665 * 239.99460 * 2 1 3 34 34 H 1.07996 * 120.00204 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.00245 * 179.97438 * 5 4 3 36 36 H 1.08009 * 119.99589 * 179.97438 * 6 5 4 37 37 H 1.07994 * 120.00496 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47293 * 294.99801 * 11 9 8 39 39 H 1.08997 * 109.47381 * 54.99632 * 11 9 8 40 40 H 0.96993 * 120.00495 * 359.97438 * 12 11 9 41 41 H 1.09002 * 109.47125 * 299.98996 * 15 13 12 42 42 H 1.08997 * 109.47224 * 59.99870 * 15 13 12 43 43 H 1.08998 * 109.46967 * 300.00136 * 16 15 13 44 44 H 1.09007 * 109.46875 * 60.00105 * 16 15 13 45 45 H 1.09001 * 115.55148 * 29.41501 * 17 16 15 46 46 H 1.09003 * 117.49738 * 0.02562 * 18 17 16 47 47 H 1.08993 * 117.50220 * 145.02195 * 18 17 16 48 48 H 1.09004 * 117.49955 * 214.98102 * 19 17 16 49 49 H 1.09002 * 117.50275 * 359.97438 * 19 17 16 50 50 H 0.97005 * 120.00191 * 123.83921 * 20 9 8 51 51 H 0.97006 * 120.00366 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3613 2.0377 -1.1929 5 6 2.8225 3.3405 -1.1929 6 6 2.9544 4.0271 -0.0001 7 6 2.6244 3.4110 1.1922 8 6 2.1591 2.1090 1.1918 9 6 1.7943 1.4389 2.4914 10 1 2.1630 0.4131 2.4873 11 6 2.4277 2.2039 3.6551 12 7 1.9769 1.6249 4.9231 13 6 2.4087 2.1411 6.0909 14 8 3.1708 3.0846 6.0920 15 6 1.9454 1.5451 7.3952 16 6 2.5788 2.3102 8.5591 17 6 2.1080 1.7056 9.8833 18 6 1.2726 2.5934 10.8079 19 6 2.7217 2.2596 11.1706 20 7 0.3374 1.4335 2.6459 21 6 -0.3604 2.6109 2.5998 22 1 0.1512 3.5330 2.3666 23 6 -1.7253 2.6190 2.8526 24 7 -2.3488 1.4952 3.1363 25 14 -2.6769 4.2252 2.7904 26 1 -2.5599 4.8177 1.4337 27 1 -4.1068 3.9655 3.0959 28 1 -2.1207 5.1694 3.7925 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 2.2585 1.5012 -2.1245 35 1 3.0798 3.8223 -2.1246 36 1 3.3153 5.0451 -0.0001 37 1 2.7271 3.9474 2.1238 38 1 3.5133 2.1326 3.5888 39 1 2.1288 3.2510 3.6072 40 1 1.3672 0.8706 4.9223 41 1 0.8597 1.6157 7.4616 42 1 2.2452 0.4982 7.4431 43 1 3.6644 2.2394 8.4924 44 1 2.2793 3.3573 8.5113 45 1 1.8697 0.6423 9.8562 46 1 1.0581 3.6081 10.4725 47 1 0.4851 2.1142 11.3894 48 1 2.8870 1.5608 11.9907 49 1 3.4612 3.0546 11.0742 50 1 -0.1329 0.5959 2.7809 51 1 -3.3025 1.5010 3.3133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754784200.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:32 Heat of formation + Delta-G solvation = -4.495509 kcal Electronic energy + Delta-G solvation = -28722.929263 eV Core-core repulsion = 25007.995646 eV Total energy + Delta-G solvation = -3714.933617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.01488 -40.33996 -38.39207 -37.38624 -35.22709 -34.69658 -33.64383 -32.93031 -31.29915 -30.16440 -28.71982 -26.54007 -25.39203 -24.48014 -23.97570 -23.20382 -21.80155 -21.36657 -21.22579 -20.71716 -19.25014 -17.93463 -17.38477 -17.09735 -16.83807 -16.57402 -16.32414 -15.99946 -15.77256 -15.59475 -15.15620 -14.95904 -14.53698 -14.45276 -14.39303 -14.06638 -13.83510 -13.67376 -13.48450 -13.10593 -13.00969 -12.86130 -12.73335 -12.54364 -12.48091 -12.42242 -12.22596 -12.18451 -12.10716 -12.00608 -11.75294 -11.40379 -11.22329 -11.17780 -10.89103 -10.79321 -10.67665 -9.86497 -9.56507 -9.37122 -8.89731 -7.87741 -5.12505 0.62939 0.63917 1.43687 1.46456 1.49707 1.77136 2.41147 2.58688 2.94088 2.99317 3.45764 3.74580 3.87748 3.92579 4.04874 4.06013 4.08162 4.12617 4.15133 4.23239 4.35010 4.37619 4.38884 4.45822 4.52580 4.62954 4.73450 4.76291 4.81143 4.81562 4.81973 4.86485 4.90029 5.06475 5.07665 5.12984 5.17027 5.19868 5.25421 5.28909 5.32040 5.40292 5.44896 5.61656 5.65234 5.72698 5.78452 5.87136 5.99564 6.28645 6.33926 6.73708 7.39620 7.44614 8.07662 8.38030 9.33234 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.003501 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.520934 B = 7995.638684 C = 9204.516703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.069 4.069 3 C -0.077 4.077 4 C -0.130 4.130 5 C -0.129 4.129 6 C -0.138 4.138 7 C -0.131 4.131 8 C -0.082 4.082 9 C 0.204 3.796 10 H 0.093 0.907 11 C 0.117 3.883 12 N -0.701 5.701 13 C 0.502 3.498 14 O -0.598 6.598 15 C -0.128 4.128 16 C -0.067 4.067 17 C -0.156 4.156 18 C -0.188 4.188 19 C -0.177 4.177 20 N -0.700 5.700 21 C -0.206 4.206 22 H 0.058 0.942 23 C -0.051 4.051 24 N -0.951 5.951 25 Si 0.936 3.064 26 H -0.290 1.290 27 H -0.296 1.296 28 H -0.293 1.293 29 H 0.032 0.968 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.059 0.941 39 H 0.039 0.961 40 H 0.409 0.591 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.121 0.879 46 H 0.083 0.917 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.384 0.616 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.670 -5.029 3.259 12.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.106 4.106 3 C -0.077 4.077 4 C -0.148 4.148 5 C -0.147 4.147 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.085 4.085 9 C 0.094 3.906 10 H 0.111 0.889 11 C -0.010 4.010 12 N -0.350 5.350 13 C 0.290 3.710 14 O -0.480 6.480 15 C -0.168 4.168 16 C -0.105 4.105 17 C -0.174 4.174 18 C -0.225 4.225 19 C -0.214 4.214 20 N -0.340 5.340 21 C -0.338 4.338 22 H 0.076 0.924 23 C -0.244 4.244 24 N -0.601 5.601 25 Si 0.769 3.231 26 H -0.217 1.217 27 H -0.222 1.222 28 H -0.220 1.220 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.245 0.755 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.139 0.861 46 H 0.102 0.898 47 H 0.123 0.877 48 H 0.128 0.872 49 H 0.108 0.892 50 H 0.219 0.781 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.114 -4.220 3.257 12.326 hybrid contribution -1.450 0.937 -0.126 1.730 sum 9.664 -3.284 3.131 10.676 Atomic orbital electron populations 1.21974 0.95226 1.01239 1.03295 1.20433 0.95640 0.91856 1.02698 1.19919 0.98003 0.97239 0.92563 1.21245 1.00199 0.95674 0.97658 1.21323 1.00199 0.94870 0.98349 1.21300 1.01274 1.00399 0.92650 1.21249 1.00054 0.95157 0.98470 1.20261 0.97556 0.94653 0.95996 1.19456 0.84729 0.97523 0.88850 0.88879 1.21751 0.97224 0.97537 0.84449 1.45783 1.48378 1.35714 1.05173 1.21329 0.79972 0.82856 0.86825 1.90625 1.38563 1.30278 1.88579 1.21641 1.02889 1.02304 0.89917 1.20805 1.00031 0.98207 0.91410 1.22347 1.04937 0.99704 0.90411 1.23116 0.94903 1.00560 1.03945 1.23045 0.95939 1.03781 0.98595 1.42378 1.00297 1.06078 1.85233 1.19035 0.90195 0.87965 1.36603 0.92430 1.24996 0.97630 0.97852 1.03923 1.69689 1.08800 1.25240 1.56419 0.85789 0.78214 0.81900 0.77238 1.21705 1.22224 1.22033 0.94899 0.92703 0.90404 0.90822 0.90296 0.84628 0.84105 0.85124 0.87198 0.92261 0.94259 0.75498 0.88342 0.86164 0.91787 0.93485 0.86124 0.89796 0.87728 0.87249 0.89225 0.78127 0.94330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.36 9.88 71.98 0.71 -4.65 16 2 C -0.07 -1.95 5.56 29.85 0.17 -1.79 16 3 C -0.08 -2.44 5.13 -19.87 -0.10 -2.54 16 4 C -0.13 -3.71 9.68 22.27 0.22 -3.49 16 5 C -0.13 -3.56 10.05 22.27 0.22 -3.33 16 6 C -0.14 -4.19 10.05 22.27 0.22 -3.97 16 7 C -0.13 -4.55 8.52 22.27 0.19 -4.36 16 8 C -0.08 -2.86 4.60 -19.87 -0.09 -2.95 16 9 C 0.20 7.02 2.45 44.24 0.11 7.13 16 10 H 0.09 2.79 6.56 -2.39 -0.02 2.77 16 11 C 0.12 4.17 4.11 86.38 0.35 4.53 16 12 N -0.70 -23.30 5.39 -463.07 -2.49 -25.79 16 13 C 0.50 17.01 7.83 87.66 0.69 17.70 16 14 O -0.60 -24.81 15.98 -3.04 -0.05 -24.86 16 15 C -0.13 -3.18 5.66 29.85 0.17 -3.01 16 16 C -0.07 -1.65 4.79 30.60 0.15 -1.50 16 17 C -0.16 -3.02 5.73 -10.79 -0.06 -3.08 16 18 C -0.19 -3.58 10.18 30.62 0.31 -3.26 16 19 C -0.18 -3.07 10.25 30.62 0.31 -2.76 16 20 N -0.70 -29.01 2.73 -326.50 -0.89 -29.91 16 21 C -0.21 -10.20 8.65 84.03 0.73 -9.48 16 22 H 0.06 3.00 6.93 -2.91 -0.02 2.98 16 23 C -0.05 -2.69 5.50 84.86 0.47 -2.22 16 24 N -0.95 -52.20 13.06 21.65 0.28 -51.91 16 25 Si 0.94 45.49 29.55 68.60 2.03 47.52 16 26 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 28 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 3.20 4.71 -2.39 -0.01 3.19 16 32 H 0.07 1.95 6.38 -2.38 -0.02 1.93 16 33 H 0.08 1.84 8.05 -2.39 -0.02 1.82 16 34 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.11 3.98 5.84 -2.91 -0.02 3.97 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.04 1.65 6.05 -2.39 -0.01 1.64 16 40 H 0.41 12.59 8.14 -92.71 -0.75 11.83 16 41 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 44 H 0.05 1.36 7.83 -2.38 -0.02 1.34 16 45 H 0.12 1.96 8.08 -2.39 -0.02 1.94 16 46 H 0.08 1.76 8.03 -2.39 -0.02 1.74 16 47 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 49 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.38 16.76 7.20 -92.70 -0.67 16.09 16 51 H 0.25 13.65 8.31 -92.70 -0.77 12.88 16 Total: -1.00 -62.59 406.19 3.15 -59.45 By element: Atomic # 1 Polarization: 49.02 SS G_CDS: -0.49 Total: 48.53 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 4.76 Total: -23.03 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -3.10 Total: -107.61 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.05 Total: -24.86 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -62.59 3.15 -59.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754784200.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.951 kcal (2) G-P(sol) polarization free energy of solvation -62.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds