Wall clock time and date at job start Tue Mar 31 2020 16:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47244 * 2 1 4 4 C 1.38253 * 119.99946 * 264.97371 * 3 2 1 5 5 C 1.38213 * 120.00246 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99935 * 359.95953 * 5 4 3 7 7 C 1.38213 * 119.99628 * 359.85447 * 6 5 4 8 8 C 1.38216 * 120.00068 * 84.99923 * 3 2 1 9 9 C 1.50697 * 119.99888 * 359.97438 * 8 3 2 10 10 H 1.09003 * 109.47218 * 42.33249 * 9 8 3 11 11 C 1.52999 * 109.46822 * 162.33651 * 9 8 3 12 12 N 1.46508 * 109.46879 * 175.00015 * 11 9 8 13 13 C 1.34772 * 119.99751 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00519 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99940 * 179.97438 * 13 12 11 16 16 C 1.54265 * 110.03044 * 297.91085 * 15 13 12 17 17 C 1.54973 * 104.15939 * 217.13485 * 16 15 13 18 18 C 1.54890 * 102.77314 * 37.88852 * 17 16 15 19 19 C 1.53875 * 110.03193 * 180.69307 * 15 13 12 20 20 N 1.46501 * 109.47405 * 282.33375 * 9 8 3 21 21 C 1.36936 * 120.00087 * 303.65311 * 20 9 8 22 22 H 1.08008 * 120.00075 * 5.40260 * 21 20 9 23 23 C 1.38818 * 120.00133 * 185.40972 * 21 20 9 24 24 N 1.31614 * 119.99776 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00040 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46980 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47366 * 119.99638 * 25 23 21 28 28 H 1.48502 * 109.47318 * 240.00006 * 25 23 21 29 29 H 1.09001 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47362 * 300.00195 * 1 2 3 31 31 H 1.09004 * 109.46435 * 60.00236 * 1 2 3 32 32 H 1.08998 * 109.47362 * 239.99805 * 2 1 3 33 33 H 1.09004 * 109.46937 * 119.99600 * 2 1 3 34 34 H 1.08003 * 120.00036 * 359.97438 * 4 3 2 35 35 H 1.07996 * 120.00073 * 179.97438 * 5 4 3 36 36 H 1.07997 * 120.00421 * 180.02562 * 6 5 4 37 37 H 1.08001 * 120.00051 * 180.21363 * 7 6 5 38 38 H 1.08999 * 109.47400 * 55.00305 * 11 9 8 39 39 H 1.09001 * 109.46933 * 294.99566 * 11 9 8 40 40 H 0.96995 * 119.99729 * 0.02562 * 12 11 9 41 41 H 1.08999 * 110.01604 * 59.30137 * 15 13 12 42 42 H 1.08997 * 110.49124 * 335.78049 * 16 15 13 43 43 H 1.09000 * 110.48485 * 98.43118 * 16 15 13 44 44 H 1.08996 * 110.71560 * 279.57900 * 17 16 15 45 45 H 1.08997 * 110.92017 * 156.29643 * 17 16 15 46 46 H 1.09006 * 110.48448 * 203.40384 * 18 17 16 47 47 H 1.09004 * 110.59872 * 80.82156 * 18 17 16 48 48 H 1.08996 * 110.03268 * 238.56891 * 19 15 13 49 49 H 1.08999 * 110.03462 * 359.95296 * 19 15 13 50 50 H 0.96996 * 120.00051 * 123.64078 * 20 9 8 51 51 H 0.96995 * 120.00011 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3617 2.0376 -1.1927 5 6 2.8219 3.3408 -1.1928 6 6 2.9522 4.0280 -0.0002 7 6 2.6193 3.4127 1.1918 8 6 2.1644 2.1072 1.1924 9 6 1.8054 1.4349 2.4925 10 1 2.1805 0.4114 2.4880 11 6 2.4356 2.2040 3.6553 12 7 1.9900 1.6224 4.9240 13 6 2.4209 2.1407 6.0911 14 8 3.1771 3.0889 6.0912 15 6 1.9621 1.5427 7.3961 16 6 0.4309 1.6757 7.5290 17 6 0.2050 1.9694 9.0337 18 6 1.3961 2.8954 9.3845 19 6 2.5757 2.3176 8.5755 20 7 0.3488 1.4204 2.6489 21 6 -0.3559 2.5938 2.6075 22 1 0.1492 3.5192 2.3729 23 6 -1.7196 2.5939 2.8671 24 7 -2.3352 1.4662 3.1527 25 14 -2.6809 4.1946 2.8113 26 1 -1.7632 5.3114 2.4705 27 1 -3.7460 4.0967 1.7812 28 1 -3.2973 4.4484 4.1383 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2593 1.5010 -2.1244 35 1 3.0796 3.8224 -2.1245 36 1 3.3114 5.0465 -0.0003 37 1 2.7178 3.9506 2.1231 38 1 2.1300 3.2492 3.6077 39 1 3.5215 2.1394 3.5875 40 1 1.3855 0.8638 4.9239 41 1 2.2516 0.4932 7.4479 42 1 0.0655 2.5025 6.9201 43 1 -0.0590 0.7448 7.2435 44 1 0.2464 1.0493 9.6166 45 1 -0.7432 2.4830 9.1920 46 1 1.6096 2.8544 10.4526 47 1 1.1884 3.9204 9.0771 48 1 3.1623 1.6439 9.2001 49 1 3.2059 3.1256 8.2040 50 1 -0.1164 0.5797 2.7817 51 1 -3.2881 1.4662 3.3337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754786295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:27 Heat of formation + Delta-G solvation = -19.712508 kcal Electronic energy + Delta-G solvation = -29605.831887 eV Core-core repulsion = 25890.238411 eV Total energy + Delta-G solvation = -3715.593475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.84781 -39.25649 -36.92521 -35.80010 -33.82203 -33.17948 -31.93245 -29.73362 -29.31668 -28.82698 -28.47338 -26.77130 -24.44048 -23.26729 -22.67551 -21.59031 -20.58320 -20.21641 -19.69292 -18.95912 -17.47201 -17.06073 -16.03042 -15.74765 -15.38526 -15.13960 -14.86571 -14.59930 -14.37319 -14.05342 -13.66448 -13.39852 -13.24243 -13.13103 -13.05338 -12.74416 -12.53905 -12.36824 -11.98180 -11.63055 -11.43365 -11.22511 -11.17122 -11.12841 -11.03100 -10.98462 -10.92643 -10.84561 -10.70774 -10.57663 -10.39759 -10.23467 -10.09667 -9.90422 -9.70033 -9.28817 -8.97375 -8.41249 -8.27461 -8.06448 -7.08963 -5.86576 -3.16604 1.89904 1.91779 3.12902 3.38391 3.46722 3.48139 3.74974 4.26005 4.55789 4.64874 4.77429 4.95709 5.21062 5.27422 5.34902 5.41071 5.45677 5.49918 5.54859 5.58969 5.61332 5.65904 5.68846 5.75443 5.78186 5.78462 5.85381 6.01146 6.02445 6.06958 6.07664 6.09744 6.13084 6.21821 6.35011 6.37550 6.46539 6.48209 6.50285 6.53365 6.58894 6.63768 6.68564 6.96284 6.98332 7.11122 7.26256 7.36706 7.53948 7.70590 8.10685 8.29056 8.75936 9.43381 9.88957 10.26568 11.34602 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010500 B = 0.004408 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.105511 B = 6351.155988 C = 7547.473627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.075 4.075 3 C -0.063 4.063 4 C -0.126 4.126 5 C -0.131 4.131 6 C -0.131 4.131 7 C -0.110 4.110 8 C -0.061 4.061 9 C 0.197 3.803 10 H 0.071 0.929 11 C 0.108 3.892 12 N -0.700 5.700 13 C 0.516 3.484 14 O -0.558 6.558 15 C -0.112 4.112 16 C -0.113 4.113 17 C -0.123 4.123 18 C -0.124 4.124 19 C -0.117 4.117 20 N -0.703 5.703 21 C -0.231 4.231 22 H 0.071 0.929 23 C -0.003 4.003 24 N -0.928 5.928 25 Si 0.897 3.103 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.041 0.959 30 H 0.112 0.888 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.403 0.597 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.387 0.613 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 -3.532 2.647 9.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.112 4.112 3 C -0.063 4.063 4 C -0.144 4.144 5 C -0.149 4.149 6 C -0.149 4.149 7 C -0.129 4.129 8 C -0.064 4.064 9 C 0.086 3.914 10 H 0.088 0.912 11 C -0.019 4.019 12 N -0.349 5.349 13 C 0.301 3.699 14 O -0.437 6.437 15 C -0.133 4.133 16 C -0.151 4.151 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.155 4.155 20 N -0.344 5.344 21 C -0.361 4.361 22 H 0.089 0.911 23 C -0.199 4.199 24 N -0.576 5.576 25 Si 0.728 3.272 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.238 0.762 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.106 0.894 50 H 0.223 0.777 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.199 -2.711 2.642 9.947 hybrid contribution -1.221 0.436 -0.269 1.324 sum 7.978 -2.276 2.373 8.629 Atomic orbital electron populations 1.22085 0.93544 1.01058 1.05492 1.20453 0.97400 0.92330 1.01064 1.19655 0.97797 0.96435 0.92449 1.20883 1.01088 0.95267 0.97141 1.20933 1.01501 0.94971 0.97499 1.21009 1.01621 0.99393 0.92869 1.21171 0.98898 0.94826 0.98010 1.20243 0.96234 0.94221 0.95708 1.19374 0.86916 0.96215 0.88900 0.91150 1.21940 0.96916 0.99171 0.83842 1.45709 1.48753 1.35249 1.05234 1.20460 0.80359 0.83421 0.85615 1.90608 1.37122 1.28415 1.87568 1.21903 0.97483 1.00728 0.93195 1.22348 0.92775 1.03145 0.96827 1.22501 0.98317 0.99343 0.95915 1.22354 0.95065 0.99490 0.99206 1.22135 0.98120 1.00409 0.94853 1.42460 0.98962 1.07530 1.85479 1.19114 0.90385 0.87321 1.39328 0.91101 1.24622 0.96744 0.96470 1.02086 1.69630 1.09465 1.24260 1.54255 0.86274 0.80210 0.83612 0.77095 1.20608 1.21989 1.21966 0.94033 0.87003 0.94055 0.92830 0.91580 0.87049 0.87129 0.87016 0.86095 0.91185 0.92947 0.76225 0.89042 0.90481 0.90719 0.91631 0.91508 0.91962 0.91631 0.91963 0.89355 0.77695 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.87 37.16 0.37 -2.49 16 2 C -0.08 -1.15 5.57 -27.88 -0.16 -1.30 16 3 C -0.06 -1.05 5.13 -104.62 -0.54 -1.59 16 4 C -0.13 -1.96 9.68 -39.59 -0.38 -2.34 16 5 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 6 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 7 C -0.11 -1.93 8.52 -39.58 -0.34 -2.26 16 8 C -0.06 -1.08 4.61 -104.63 -0.48 -1.56 16 9 C 0.20 3.42 2.44 -69.08 -0.17 3.25 16 10 H 0.07 1.11 6.58 -51.93 -0.34 0.76 16 11 C 0.11 1.90 4.11 -4.04 -0.02 1.88 16 12 N -0.70 -11.77 5.32 -60.29 -0.32 -12.09 16 13 C 0.52 8.88 7.00 -10.99 -0.08 8.80 16 14 O -0.56 -11.37 15.21 5.55 0.08 -11.29 16 15 C -0.11 -1.54 3.29 -90.65 -0.30 -1.83 16 16 C -0.11 -1.58 6.30 -25.03 -0.16 -1.74 16 17 C -0.12 -1.46 6.91 -24.69 -0.17 -1.63 16 18 C -0.12 -1.47 6.83 -25.07 -0.17 -1.64 16 19 C -0.12 -1.53 6.40 -25.61 -0.16 -1.69 16 20 N -0.70 -14.45 2.73 -54.55 -0.15 -14.60 16 21 C -0.23 -5.61 8.63 -15.06 -0.13 -5.74 16 22 H 0.07 1.81 6.92 -52.48 -0.36 1.44 16 23 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 24 N -0.93 -24.95 13.06 55.49 0.72 -24.23 16 25 Si 0.90 21.75 29.55 -169.99 -5.02 16.72 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.11 2.32 4.71 -51.93 -0.24 2.08 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 33 H 0.07 0.96 6.38 -51.93 -0.33 0.63 16 34 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 35 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.12 2.11 5.84 -52.49 -0.31 1.81 16 38 H 0.07 1.42 6.04 -51.93 -0.31 1.10 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 6.45 8.13 -40.82 -0.33 6.11 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.30 7.85 -51.93 -0.41 0.90 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.09 1.35 6.39 -51.93 -0.33 1.02 16 50 H 0.39 8.43 7.21 -40.82 -0.29 8.13 16 51 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -28.02 396.08 -10.80 -38.82 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -8.32 Total: 17.59 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -3.77 Total: -16.90 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.26 Total: -50.91 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.02 -10.80 -38.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754786295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.108 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds