Wall clock time and date at job start Tue Mar 31 2020 16:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47244 * 2 1 4 4 C 1.38253 * 119.99946 * 264.97371 * 3 2 1 5 5 C 1.38213 * 120.00246 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99935 * 359.95953 * 5 4 3 7 7 C 1.38213 * 119.99628 * 359.85447 * 6 5 4 8 8 C 1.38216 * 120.00068 * 84.99923 * 3 2 1 9 9 C 1.50697 * 119.99888 * 359.97438 * 8 3 2 10 10 H 1.09003 * 109.47218 * 42.33249 * 9 8 3 11 11 C 1.52999 * 109.46822 * 162.33651 * 9 8 3 12 12 N 1.46508 * 109.46879 * 175.00015 * 11 9 8 13 13 C 1.34772 * 119.99751 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00519 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99940 * 179.97438 * 13 12 11 16 16 C 1.54265 * 110.03044 * 297.91085 * 15 13 12 17 17 C 1.54973 * 104.15939 * 217.13485 * 16 15 13 18 18 C 1.54890 * 102.77314 * 37.88852 * 17 16 15 19 19 C 1.53875 * 110.03193 * 180.69307 * 15 13 12 20 20 N 1.46501 * 109.47405 * 282.33375 * 9 8 3 21 21 C 1.36936 * 120.00087 * 303.65311 * 20 9 8 22 22 H 1.08008 * 120.00075 * 5.40260 * 21 20 9 23 23 C 1.38818 * 120.00133 * 185.40972 * 21 20 9 24 24 N 1.31614 * 119.99776 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00040 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46980 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47366 * 119.99638 * 25 23 21 28 28 H 1.48502 * 109.47318 * 240.00006 * 25 23 21 29 29 H 1.09001 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47362 * 300.00195 * 1 2 3 31 31 H 1.09004 * 109.46435 * 60.00236 * 1 2 3 32 32 H 1.08998 * 109.47362 * 239.99805 * 2 1 3 33 33 H 1.09004 * 109.46937 * 119.99600 * 2 1 3 34 34 H 1.08003 * 120.00036 * 359.97438 * 4 3 2 35 35 H 1.07996 * 120.00073 * 179.97438 * 5 4 3 36 36 H 1.07997 * 120.00421 * 180.02562 * 6 5 4 37 37 H 1.08001 * 120.00051 * 180.21363 * 7 6 5 38 38 H 1.08999 * 109.47400 * 55.00305 * 11 9 8 39 39 H 1.09001 * 109.46933 * 294.99566 * 11 9 8 40 40 H 0.96995 * 119.99729 * 0.02562 * 12 11 9 41 41 H 1.08999 * 110.01604 * 59.30137 * 15 13 12 42 42 H 1.08997 * 110.49124 * 335.78049 * 16 15 13 43 43 H 1.09000 * 110.48485 * 98.43118 * 16 15 13 44 44 H 1.08996 * 110.71560 * 279.57900 * 17 16 15 45 45 H 1.08997 * 110.92017 * 156.29643 * 17 16 15 46 46 H 1.09006 * 110.48448 * 203.40384 * 18 17 16 47 47 H 1.09004 * 110.59872 * 80.82156 * 18 17 16 48 48 H 1.08996 * 110.03268 * 238.56891 * 19 15 13 49 49 H 1.08999 * 110.03462 * 359.95296 * 19 15 13 50 50 H 0.96996 * 120.00051 * 123.64078 * 20 9 8 51 51 H 0.96995 * 120.00011 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3617 2.0376 -1.1927 5 6 2.8219 3.3408 -1.1928 6 6 2.9522 4.0280 -0.0002 7 6 2.6193 3.4127 1.1918 8 6 2.1644 2.1072 1.1924 9 6 1.8054 1.4349 2.4925 10 1 2.1805 0.4114 2.4880 11 6 2.4356 2.2040 3.6553 12 7 1.9900 1.6224 4.9240 13 6 2.4209 2.1407 6.0911 14 8 3.1771 3.0889 6.0912 15 6 1.9621 1.5427 7.3961 16 6 0.4309 1.6757 7.5290 17 6 0.2050 1.9694 9.0337 18 6 1.3961 2.8954 9.3845 19 6 2.5757 2.3176 8.5755 20 7 0.3488 1.4204 2.6489 21 6 -0.3559 2.5938 2.6075 22 1 0.1492 3.5192 2.3729 23 6 -1.7196 2.5939 2.8671 24 7 -2.3352 1.4662 3.1527 25 14 -2.6809 4.1946 2.8113 26 1 -1.7632 5.3114 2.4705 27 1 -3.7460 4.0967 1.7812 28 1 -3.2973 4.4484 4.1383 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.2593 1.5010 -2.1244 35 1 3.0796 3.8224 -2.1245 36 1 3.3114 5.0465 -0.0003 37 1 2.7178 3.9506 2.1231 38 1 2.1300 3.2492 3.6077 39 1 3.5215 2.1394 3.5875 40 1 1.3855 0.8638 4.9239 41 1 2.2516 0.4932 7.4479 42 1 0.0655 2.5025 6.9201 43 1 -0.0590 0.7448 7.2435 44 1 0.2464 1.0493 9.6166 45 1 -0.7432 2.4830 9.1920 46 1 1.6096 2.8544 10.4526 47 1 1.1884 3.9204 9.0771 48 1 3.1623 1.6439 9.2001 49 1 3.2059 3.1256 8.2040 50 1 -0.1164 0.5797 2.7817 51 1 -3.2881 1.4662 3.3337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754786295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:26 Heat of formation + Delta-G solvation = -33.370194 kcal Electronic energy + Delta-G solvation = -29606.424129 eV Core-core repulsion = 25890.238411 eV Total energy + Delta-G solvation = -3716.185717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20050 -40.54951 -38.11800 -37.28377 -35.25704 -34.69989 -33.52987 -31.29959 -30.50936 -30.12439 -29.52801 -28.20634 -26.16016 -24.56005 -24.16806 -22.85188 -21.68809 -21.44557 -21.07588 -20.23482 -19.24929 -18.33251 -17.41988 -17.09724 -16.82024 -16.46026 -16.25232 -15.93666 -15.75315 -15.62713 -15.17364 -14.74019 -14.61486 -14.47180 -14.27412 -14.10813 -13.84483 -13.68345 -13.53173 -13.11969 -12.91832 -12.74562 -12.61603 -12.51144 -12.48814 -12.22633 -12.16979 -12.01317 -11.98150 -11.92479 -11.76739 -11.65288 -11.41820 -11.38208 -11.19551 -10.88685 -10.66624 -9.88409 -9.56932 -9.37496 -8.89159 -7.87914 -5.12252 0.62609 0.63597 1.40110 1.45857 1.49906 1.74117 2.40254 2.57822 2.98991 3.45552 3.58149 3.71167 3.85631 3.91987 4.04413 4.08925 4.14455 4.22616 4.29452 4.37713 4.40581 4.49014 4.51162 4.56091 4.59228 4.69928 4.73903 4.78893 4.80789 4.81177 4.85982 4.87344 5.02231 5.08164 5.11826 5.18904 5.23972 5.25277 5.27981 5.31602 5.39749 5.40823 5.47800 5.62323 5.65704 5.72342 5.78216 5.87206 5.99389 6.28290 6.33723 6.72082 7.37333 7.44626 8.07254 8.37941 9.33191 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010500 B = 0.004408 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.105511 B = 6351.155988 C = 7547.473627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.069 4.069 3 C -0.076 4.076 4 C -0.130 4.130 5 C -0.129 4.129 6 C -0.139 4.139 7 C -0.131 4.131 8 C -0.081 4.081 9 C 0.203 3.797 10 H 0.093 0.907 11 C 0.117 3.883 12 N -0.698 5.698 13 C 0.508 3.492 14 O -0.594 6.594 15 C -0.105 4.105 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.122 4.122 19 C -0.116 4.116 20 N -0.698 5.698 21 C -0.202 4.202 22 H 0.057 0.943 23 C -0.050 4.050 24 N -0.948 5.948 25 Si 0.932 3.068 26 H -0.284 1.284 27 H -0.298 1.298 28 H -0.299 1.299 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.039 0.961 39 H 0.059 0.941 40 H 0.408 0.592 41 H 0.122 0.878 42 H 0.037 0.963 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.088 0.912 47 H 0.046 0.954 48 H 0.089 0.911 49 H 0.060 0.940 50 H 0.383 0.617 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.883 -4.960 2.396 11.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.106 4.106 3 C -0.076 4.076 4 C -0.148 4.148 5 C -0.147 4.147 6 C -0.157 4.157 7 C -0.149 4.149 8 C -0.083 4.083 9 C 0.094 3.906 10 H 0.111 0.889 11 C -0.009 4.009 12 N -0.347 5.347 13 C 0.296 3.704 14 O -0.476 6.476 15 C -0.126 4.126 16 C -0.151 4.151 17 C -0.154 4.154 18 C -0.160 4.160 19 C -0.154 4.154 20 N -0.338 5.338 21 C -0.334 4.334 22 H 0.075 0.925 23 C -0.243 4.243 24 N -0.598 5.598 25 Si 0.765 3.235 26 H -0.209 1.209 27 H -0.226 1.226 28 H -0.227 1.227 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.127 0.873 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.244 0.756 41 H 0.140 0.860 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.065 0.935 48 H 0.108 0.892 49 H 0.079 0.921 50 H 0.219 0.781 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.345 -4.139 2.382 11.394 hybrid contribution -1.454 0.931 -0.275 1.748 sum 8.892 -3.208 2.107 9.684 Atomic orbital electron populations 1.21967 0.95196 1.01214 1.03285 1.20431 0.95661 0.91850 1.02672 1.19910 0.97931 0.97248 0.92529 1.21248 1.00209 0.95669 0.97678 1.21317 1.00176 0.94854 0.98315 1.21293 1.01288 1.00403 0.92668 1.21241 1.00112 0.95134 0.98440 1.20241 0.97606 0.94563 0.95935 1.19461 0.84828 0.97477 0.88854 0.88895 1.21762 0.97254 0.97493 0.84403 1.45733 1.48626 1.35214 1.05081 1.21172 0.79578 0.82889 0.86755 1.90590 1.38834 1.30044 1.88177 1.21983 0.97171 1.02225 0.91266 1.22307 0.92817 1.01901 0.98045 1.22503 0.98184 1.00440 0.94289 1.22357 0.94652 0.98402 1.00554 1.22145 0.98340 1.00035 0.94905 1.42365 1.00221 1.06043 1.85205 1.19076 0.90178 0.87962 1.36233 0.92517 1.24967 0.97658 0.97680 1.03994 1.69697 1.08952 1.24792 1.56406 0.85689 0.79241 0.82170 0.76363 1.20948 1.22606 1.22709 0.92755 0.90399 0.94885 0.90304 0.90869 0.84596 0.84093 0.85185 0.87329 0.94295 0.92270 0.75610 0.86024 0.94388 0.90010 0.89031 0.91600 0.89375 0.93515 0.89235 0.92094 0.78141 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.33 9.87 71.98 0.71 -4.62 16 2 C -0.07 -1.95 5.57 29.85 0.17 -1.78 16 3 C -0.08 -2.40 5.13 -19.87 -0.10 -2.50 16 4 C -0.13 -3.71 9.68 22.27 0.22 -3.50 16 5 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 6 C -0.14 -4.22 10.05 22.27 0.22 -4.00 16 7 C -0.13 -4.58 8.52 22.27 0.19 -4.39 16 8 C -0.08 -2.82 4.61 -19.87 -0.09 -2.91 16 9 C 0.20 7.04 2.44 44.24 0.11 7.15 16 10 H 0.09 2.80 6.58 -2.39 -0.02 2.79 16 11 C 0.12 4.23 4.11 86.38 0.35 4.59 16 12 N -0.70 -23.71 5.32 -463.04 -2.47 -26.17 16 13 C 0.51 17.74 7.00 87.66 0.61 18.35 16 14 O -0.59 -25.04 15.21 -3.04 -0.05 -25.08 16 15 C -0.11 -2.79 3.29 -10.81 -0.04 -2.82 16 16 C -0.11 -3.09 6.30 31.70 0.20 -2.89 16 17 C -0.12 -2.56 6.91 31.91 0.22 -2.34 16 18 C -0.12 -2.74 6.83 31.67 0.22 -2.52 16 19 C -0.12 -2.88 6.40 31.32 0.20 -2.68 16 20 N -0.70 -28.93 2.73 -326.49 -0.89 -29.82 16 21 C -0.20 -10.03 8.63 84.04 0.73 -9.30 16 22 H 0.06 2.98 6.92 -2.91 -0.02 2.96 16 23 C -0.05 -2.63 5.50 84.86 0.47 -2.16 16 24 N -0.95 -51.81 13.06 21.65 0.28 -51.53 16 25 Si 0.93 45.64 29.55 68.60 2.03 47.67 16 26 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 28 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 3.21 4.71 -2.39 -0.01 3.20 16 31 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.08 1.84 8.05 -2.39 -0.02 1.82 16 33 H 0.07 1.95 6.38 -2.38 -0.02 1.93 16 34 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.11 3.98 5.84 -2.91 -0.02 3.97 16 38 H 0.04 1.66 6.04 -2.39 -0.01 1.64 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.41 13.00 8.13 -92.71 -0.75 12.24 16 41 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.04 1.32 7.85 -2.39 -0.02 1.31 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.06 1.87 6.39 -2.39 -0.02 1.86 16 50 H 0.38 16.76 7.21 -92.71 -0.67 16.09 16 51 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -62.22 396.08 3.03 -59.19 By element: Atomic # 1 Polarization: 47.87 SS G_CDS: -0.48 Total: 47.38 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 4.61 Total: -21.64 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -3.07 Total: -107.53 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.05 Total: -25.08 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -62.22 3.03 -59.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754786295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.823 kcal (2) G-P(sol) polarization free energy of solvation -62.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds