Wall clock time and date at job start Tue Mar 31 2020 16:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46817 * 2 1 4 4 C 1.38237 * 119.99954 * 90.00583 * 3 2 1 5 5 C 1.38228 * 120.00407 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99911 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00364 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46762 * 90.00034 * 7 6 5 9 9 C 1.50711 * 109.46742 * 180.02562 * 8 7 6 10 10 O 1.21270 * 120.00254 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99583 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99653 * 179.97438 * 11 9 8 13 13 C 1.53786 * 113.61643 * 105.85894 * 12 11 9 14 14 C 1.54049 * 86.98426 * 140.01639 * 13 12 11 15 15 C 1.53002 * 113.62024 * 220.02020 * 14 13 12 16 16 N 1.46500 * 109.47425 * 272.50011 * 15 14 13 17 17 C 1.36928 * 120.00177 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00105 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00339 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99852 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00301 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47181 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47015 * 120.00169 * 21 19 17 24 24 H 1.48500 * 109.47252 * 239.99531 * 21 19 17 25 25 C 1.53781 * 113.61305 * 203.46742 * 12 11 9 26 26 C 1.38233 * 120.00051 * 0.25615 * 6 5 4 27 27 C 1.38237 * 120.00274 * 270.02668 * 3 2 1 28 28 H 1.09006 * 109.46516 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47022 * 299.99021 * 1 2 3 30 30 H 1.08997 * 109.47546 * 59.99675 * 1 2 3 31 31 H 1.09001 * 109.47022 * 240.00979 * 2 1 3 32 32 H 1.08997 * 109.47546 * 120.00325 * 2 1 3 33 33 H 1.08001 * 119.99956 * 359.97438 * 4 3 2 34 34 H 1.08006 * 120.00605 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.46987 * 330.00571 * 7 6 5 36 36 H 1.08997 * 109.47328 * 210.00132 * 7 6 5 37 37 H 1.08992 * 109.47299 * 60.00633 * 8 7 6 38 38 H 1.08997 * 109.47279 * 300.00128 * 8 7 6 39 39 H 0.96995 * 120.00200 * 359.97438 * 11 9 8 40 40 H 1.09002 * 112.84935 * 334.66222 * 12 11 9 41 41 H 1.08992 * 113.61675 * 254.61383 * 13 12 11 42 42 H 1.09000 * 113.60973 * 25.51671 * 13 12 11 43 43 H 1.08996 * 113.68970 * 89.12734 * 14 13 12 44 44 H 1.08997 * 109.47064 * 32.50151 * 15 14 13 45 45 H 1.09006 * 109.47182 * 152.49563 * 15 14 13 46 46 H 0.96996 * 119.99355 * 359.97438 * 16 15 14 47 47 H 0.97000 * 120.00466 * 180.02562 * 20 19 17 48 48 H 1.08999 * 113.61567 * 334.48111 * 25 12 11 49 49 H 1.08998 * 113.61196 * 105.38466 * 25 12 11 50 50 H 1.07998 * 120.00655 * 179.72677 * 26 6 5 51 51 H 1.07994 * 119.99959 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3755 1.1973 6 6 2.9542 4.0273 0.0002 7 6 3.4564 5.4482 0.0002 8 6 4.9865 5.4482 0.0000 9 6 5.4887 6.8691 0.0006 10 8 4.7007 7.7908 0.0007 11 7 6.8139 7.1154 0.0001 12 6 7.3021 8.4966 0.0001 13 6 7.8711 8.9488 1.3554 14 6 8.9756 9.6695 0.5593 15 6 10.3628 9.5559 1.1947 16 7 10.5475 10.6411 2.1614 17 6 11.7215 10.7446 2.8585 18 1 12.5112 10.0259 2.6960 19 6 11.8968 11.7731 3.7741 20 7 10.9346 12.6492 3.9718 21 14 13.4981 11.9138 4.7256 22 1 14.4110 10.8138 4.3236 23 1 14.1368 13.2212 4.4290 24 1 13.2192 11.8181 6.1810 25 6 8.7258 8.6467 -0.5616 26 6 2.7182 3.3778 -1.1970 27 6 2.2621 2.0728 -1.1971 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0824 1.5634 2.1325 34 1 2.9036 3.8848 2.1326 35 1 3.0932 5.9619 0.8903 36 1 3.0930 5.9620 -0.8897 37 1 5.3497 4.9345 -0.8900 38 1 5.3499 4.9343 0.8899 39 1 7.4442 6.3781 -0.0003 40 1 6.5870 9.1983 -0.4293 41 1 7.2130 9.6245 1.9017 42 1 8.2407 8.1277 1.9696 43 1 8.7195 10.6921 0.2822 44 1 10.4515 8.5964 1.7042 45 1 11.1249 9.6270 0.4186 46 1 9.8384 11.2866 2.3071 47 1 11.0571 13.3681 4.6113 48 1 9.3286 7.7432 -0.4704 49 1 8.7572 9.0786 -1.5618 50 1 2.8939 3.8884 -2.1323 51 1 2.0821 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755220510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:54 Heat of formation + Delta-G solvation = -10.122257 kcal Electronic energy + Delta-G solvation = -26202.741527 eV Core-core repulsion = 22487.563916 eV Total energy + Delta-G solvation = -3715.177611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.28006 -39.76064 -38.37387 -35.47208 -34.54301 -33.32183 -32.71791 -31.24519 -30.84781 -29.22263 -26.84454 -25.49987 -25.33980 -23.46980 -23.05925 -22.75453 -21.35863 -20.70785 -20.42666 -19.31960 -17.32742 -17.01958 -16.31052 -16.27409 -16.09213 -15.41818 -15.39153 -15.09030 -14.53560 -14.26402 -14.16129 -13.88145 -13.78746 -13.51213 -13.49395 -13.16962 -13.09469 -12.86377 -12.67456 -12.27801 -12.18766 -11.86630 -11.80884 -11.71796 -11.59451 -11.34442 -11.16579 -11.11948 -11.08186 -10.85984 -10.70856 -10.33088 -10.08924 -9.94760 -9.79045 -9.60591 -9.23733 -8.97668 -8.83442 -8.81405 -6.88407 -5.74027 -3.02429 0.98783 1.08827 2.56381 3.11343 3.43778 3.44406 3.49693 3.52225 4.31481 4.41468 4.46748 4.59653 4.65932 4.68246 4.69364 4.74711 4.83118 4.90006 4.91565 4.98761 5.05956 5.10488 5.13453 5.17553 5.19262 5.30566 5.45601 5.50618 5.55779 5.59859 5.66435 5.75416 5.76598 5.79892 5.84818 5.90980 5.92991 6.06963 6.10727 6.11587 6.26273 6.28658 6.32867 6.34556 6.44368 6.64115 6.69537 6.79911 6.93983 7.46154 7.71992 8.17013 8.45011 9.56037 10.15441 10.49923 11.48980 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.001483 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.188123 B =18882.127648 C =19389.594318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.088 4.088 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.085 4.085 7 C -0.065 4.065 8 C -0.135 4.135 9 C 0.511 3.489 10 O -0.543 6.543 11 N -0.719 5.719 12 C 0.117 3.883 13 C -0.138 4.138 14 C -0.111 4.111 15 C 0.166 3.834 16 N -0.732 5.732 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.137 4.137 26 C -0.113 4.113 27 C -0.117 4.117 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.400 0.600 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.084 0.916 49 H 0.071 0.929 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.717 -25.908 -12.152 34.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.085 4.085 7 C -0.103 4.103 8 C -0.175 4.175 9 C 0.297 3.703 10 O -0.420 6.420 11 N -0.369 5.369 12 C 0.013 3.987 13 C -0.177 4.177 14 C -0.130 4.130 15 C 0.038 3.962 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.176 4.176 26 C -0.131 4.131 27 C -0.135 4.135 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.234 0.766 40 H 0.129 0.871 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.103 0.897 49 H 0.089 0.911 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.122 -25.279 -12.098 34.500 hybrid contribution 1.057 0.013 0.686 1.261 sum -19.065 -25.266 -11.412 33.646 Atomic orbital electron populations 1.21750 0.94720 1.01693 1.02265 1.20544 0.96200 0.92728 1.02799 1.19901 0.99393 0.96270 0.93265 1.21022 0.99965 0.94912 0.97516 1.21090 0.99420 0.94765 0.97759 1.19912 0.99348 0.96034 0.93205 1.20329 0.93215 0.92143 1.04598 1.21664 0.96982 0.94214 1.04646 1.20710 0.82496 0.91461 0.75606 1.90707 1.55290 1.46546 1.49431 1.46096 1.06897 1.08981 1.74952 1.22662 0.94863 0.82931 0.98241 1.23485 0.97758 1.00357 0.96090 1.22585 0.96556 0.98389 0.95496 1.20597 0.92007 0.92076 0.91532 1.42360 1.17774 1.31085 1.46376 1.19284 0.93151 1.09046 1.15546 0.91205 1.24742 0.98004 0.98023 1.00301 1.69675 1.32333 1.17401 1.38775 0.86126 0.83071 0.77338 0.79723 1.20585 1.21874 1.21902 1.23325 0.94968 1.00216 0.99075 1.21063 0.99636 0.94752 0.97665 1.21010 1.00124 0.94887 0.97479 0.92416 0.92532 0.92567 0.91110 0.91079 0.86205 0.85946 0.90088 0.90183 0.88875 0.88766 0.76601 0.87083 0.91166 0.89849 0.88870 0.96405 0.96376 0.78250 0.93588 0.89718 0.91050 0.86048 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.34 16 2 C -0.09 -0.45 6.06 -27.88 -0.17 -0.62 16 3 C -0.09 -0.63 5.13 -104.62 -0.54 -1.16 16 4 C -0.12 -0.86 9.70 -39.59 -0.38 -1.24 16 5 C -0.11 -0.89 9.70 -39.59 -0.38 -1.27 16 6 C -0.08 -0.69 5.13 -104.62 -0.54 -1.23 16 7 C -0.07 -0.56 4.64 -27.88 -0.13 -0.69 16 8 C -0.14 -1.06 5.68 -27.88 -0.16 -1.22 16 9 C 0.51 5.86 7.83 -10.98 -0.09 5.77 16 10 O -0.54 -8.49 15.60 5.57 0.09 -8.40 16 11 N -0.72 -7.49 5.36 -53.01 -0.28 -7.77 16 12 C 0.12 1.48 4.21 -67.12 -0.28 1.20 16 13 C -0.14 -2.07 7.45 -25.77 -0.19 -2.26 16 14 C -0.11 -1.76 3.76 -89.67 -0.34 -2.10 16 15 C 0.17 3.31 6.10 -4.04 -0.02 3.28 16 16 N -0.73 -18.80 5.60 -59.91 -0.34 -19.14 16 17 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 19 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 21 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 C -0.14 -1.65 7.39 -25.92 -0.19 -1.84 16 26 C -0.11 -0.86 9.70 -39.58 -0.38 -1.24 16 27 C -0.12 -0.84 9.70 -39.58 -0.38 -1.22 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 36 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.40 3.07 8.71 -40.82 -0.36 2.71 16 40 H 0.11 1.55 7.50 -51.93 -0.39 1.16 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.26 7.90 -51.93 -0.41 0.84 16 43 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 44 H 0.02 0.36 7.85 -51.93 -0.41 -0.05 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 10.41 7.67 -40.82 -0.31 10.10 16 47 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 51 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 LS Contribution 419.68 15.07 6.32 6.32 Total: -1.00 -33.75 419.68 -11.58 -45.33 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -9.01 Total: 7.67 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -4.06 Total: -13.68 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.10 Total: -54.84 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.75 -11.58 -45.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755220510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.207 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds