Wall clock time and date at job start Tue Mar 31 2020 16:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46817 * 2 1 4 4 C 1.38237 * 119.99954 * 90.00583 * 3 2 1 5 5 C 1.38228 * 120.00407 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99911 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00364 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46762 * 90.00034 * 7 6 5 9 9 C 1.50711 * 109.46742 * 180.02562 * 8 7 6 10 10 O 1.21270 * 120.00254 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99583 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99653 * 179.97438 * 11 9 8 13 13 C 1.53786 * 113.61643 * 105.85894 * 12 11 9 14 14 C 1.54049 * 86.98426 * 140.01639 * 13 12 11 15 15 C 1.53002 * 113.62024 * 220.02020 * 14 13 12 16 16 N 1.46500 * 109.47425 * 272.50011 * 15 14 13 17 17 C 1.36928 * 120.00177 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00105 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00339 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99852 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00301 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47181 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47015 * 120.00169 * 21 19 17 24 24 H 1.48500 * 109.47252 * 239.99531 * 21 19 17 25 25 C 1.53781 * 113.61305 * 203.46742 * 12 11 9 26 26 C 1.38233 * 120.00051 * 0.25615 * 6 5 4 27 27 C 1.38237 * 120.00274 * 270.02668 * 3 2 1 28 28 H 1.09006 * 109.46516 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47022 * 299.99021 * 1 2 3 30 30 H 1.08997 * 109.47546 * 59.99675 * 1 2 3 31 31 H 1.09001 * 109.47022 * 240.00979 * 2 1 3 32 32 H 1.08997 * 109.47546 * 120.00325 * 2 1 3 33 33 H 1.08001 * 119.99956 * 359.97438 * 4 3 2 34 34 H 1.08006 * 120.00605 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.46987 * 330.00571 * 7 6 5 36 36 H 1.08997 * 109.47328 * 210.00132 * 7 6 5 37 37 H 1.08992 * 109.47299 * 60.00633 * 8 7 6 38 38 H 1.08997 * 109.47279 * 300.00128 * 8 7 6 39 39 H 0.96995 * 120.00200 * 359.97438 * 11 9 8 40 40 H 1.09002 * 112.84935 * 334.66222 * 12 11 9 41 41 H 1.08992 * 113.61675 * 254.61383 * 13 12 11 42 42 H 1.09000 * 113.60973 * 25.51671 * 13 12 11 43 43 H 1.08996 * 113.68970 * 89.12734 * 14 13 12 44 44 H 1.08997 * 109.47064 * 32.50151 * 15 14 13 45 45 H 1.09006 * 109.47182 * 152.49563 * 15 14 13 46 46 H 0.96996 * 119.99355 * 359.97438 * 16 15 14 47 47 H 0.97000 * 120.00466 * 180.02562 * 20 19 17 48 48 H 1.08999 * 113.61567 * 334.48111 * 25 12 11 49 49 H 1.08998 * 113.61196 * 105.38466 * 25 12 11 50 50 H 1.07998 * 120.00655 * 179.72677 * 26 6 5 51 51 H 1.07994 * 119.99959 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3755 1.1973 6 6 2.9542 4.0273 0.0002 7 6 3.4564 5.4482 0.0002 8 6 4.9865 5.4482 0.0000 9 6 5.4887 6.8691 0.0006 10 8 4.7007 7.7908 0.0007 11 7 6.8139 7.1154 0.0001 12 6 7.3021 8.4966 0.0001 13 6 7.8711 8.9488 1.3554 14 6 8.9756 9.6695 0.5593 15 6 10.3628 9.5559 1.1947 16 7 10.5475 10.6411 2.1614 17 6 11.7215 10.7446 2.8585 18 1 12.5112 10.0259 2.6960 19 6 11.8968 11.7731 3.7741 20 7 10.9346 12.6492 3.9718 21 14 13.4981 11.9138 4.7256 22 1 14.4110 10.8138 4.3236 23 1 14.1368 13.2212 4.4290 24 1 13.2192 11.8181 6.1810 25 6 8.7258 8.6467 -0.5616 26 6 2.7182 3.3778 -1.1970 27 6 2.2621 2.0728 -1.1971 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0824 1.5634 2.1325 34 1 2.9036 3.8848 2.1326 35 1 3.0932 5.9619 0.8903 36 1 3.0930 5.9620 -0.8897 37 1 5.3497 4.9345 -0.8900 38 1 5.3499 4.9343 0.8899 39 1 7.4442 6.3781 -0.0003 40 1 6.5870 9.1983 -0.4293 41 1 7.2130 9.6245 1.9017 42 1 8.2407 8.1277 1.9696 43 1 8.7195 10.6921 0.2822 44 1 10.4515 8.5964 1.7042 45 1 11.1249 9.6270 0.4186 46 1 9.8384 11.2866 2.3071 47 1 11.0571 13.3681 4.6113 48 1 9.3286 7.7432 -0.4704 49 1 8.7572 9.0786 -1.5618 50 1 2.8939 3.8884 -2.1323 51 1 2.0821 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755220510.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:53 Heat of formation + Delta-G solvation = -29.093041 kcal Electronic energy + Delta-G solvation = -26203.564162 eV Core-core repulsion = 22487.563916 eV Total energy + Delta-G solvation = -3716.000246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.21749 -40.41101 -39.47776 -36.36489 -35.99492 -34.55960 -33.38079 -32.73577 -31.77902 -29.86514 -28.41310 -26.63089 -26.18081 -25.00413 -23.62783 -23.59544 -22.56823 -21.49441 -21.20051 -20.54110 -19.06244 -18.12926 -17.31179 -16.90306 -16.85699 -16.60810 -16.23273 -16.09887 -15.92522 -15.37303 -15.13284 -14.80593 -14.76941 -14.54692 -14.41785 -14.26551 -14.03971 -13.82383 -13.36673 -13.26771 -13.22193 -13.01548 -12.90055 -12.75379 -12.68937 -12.37058 -12.28459 -12.14305 -12.07041 -11.86895 -11.85835 -11.64513 -11.60050 -11.38412 -11.29834 -10.91944 -10.78631 -9.97274 -9.78604 -9.37514 -8.98316 -7.95002 -5.23801 0.43137 0.53874 1.47003 1.48095 1.58281 1.65828 2.25741 2.56330 2.86789 3.38252 3.57672 3.61304 3.69641 3.88903 3.90535 3.92437 3.94631 4.07732 4.14853 4.19326 4.29511 4.33756 4.38621 4.53157 4.58303 4.63726 4.65294 4.67727 4.70099 4.75288 4.81225 4.89956 4.95871 4.97131 5.02037 5.08181 5.10311 5.11524 5.15447 5.23859 5.27032 5.27059 5.39569 5.44197 5.51216 5.56689 5.67094 5.76511 5.77582 6.16222 6.27549 6.62128 7.31112 7.33242 8.11364 8.33302 9.29053 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.001483 C = 0.001444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.188123 B =18882.127648 C =19389.594318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.126 4.126 5 C -0.124 4.124 6 C -0.093 4.093 7 C -0.060 4.060 8 C -0.124 4.124 9 C 0.508 3.492 10 O -0.590 6.590 11 N -0.707 5.707 12 C 0.129 3.871 13 C -0.141 4.141 14 C -0.115 4.115 15 C 0.164 3.836 16 N -0.747 5.747 17 C -0.245 4.245 18 H 0.078 0.922 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.974 3.026 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.294 1.294 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.124 4.124 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.417 0.583 40 H 0.096 0.904 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.025 0.975 45 H 0.023 0.977 46 H 0.372 0.628 47 H 0.250 0.750 48 H 0.107 0.893 49 H 0.087 0.913 50 H 0.132 0.868 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.951 -28.703 -13.239 36.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.093 4.093 7 C -0.098 4.098 8 C -0.163 4.163 9 C 0.297 3.703 10 O -0.470 6.470 11 N -0.358 5.358 12 C 0.024 3.976 13 C -0.180 4.180 14 C -0.135 4.135 15 C 0.038 3.962 16 N -0.390 5.390 17 C -0.377 4.377 18 H 0.096 0.904 19 C -0.270 4.270 20 N -0.623 5.623 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.220 1.220 24 H -0.221 1.221 25 C -0.151 4.151 26 C -0.138 4.138 27 C -0.142 4.142 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.254 0.746 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.043 0.957 45 H 0.041 0.959 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.125 0.875 49 H 0.106 0.894 50 H 0.150 0.850 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.325 -28.148 -13.218 36.612 hybrid contribution 0.771 0.829 1.001 1.511 sum -18.554 -27.318 -12.217 35.211 Atomic orbital electron populations 1.21738 0.94488 1.02296 1.01770 1.20579 0.96319 0.91714 1.03545 1.20179 0.98874 0.97167 0.93158 1.21236 0.99921 0.94864 0.98337 1.21235 0.99771 0.95214 0.97955 1.19875 1.00170 0.95631 0.93662 1.20221 0.93864 0.92383 1.03321 1.21649 0.96262 0.91816 1.06580 1.21348 0.82255 0.92440 0.74303 1.90695 1.56471 1.48272 1.51583 1.45957 1.07117 1.08566 1.74203 1.22312 0.95092 0.83943 0.96303 1.23485 0.97373 0.99975 0.97119 1.22498 0.94387 0.99040 0.97533 1.20786 0.94439 0.90410 0.90552 1.42624 1.16751 1.32271 1.47305 1.19725 0.94047 1.08708 1.15176 0.90443 1.25601 1.01447 0.98117 1.01872 1.69840 1.34495 1.18195 1.39774 0.85054 0.79313 0.77467 0.77825 1.18775 1.22047 1.22129 1.23216 0.94048 0.99569 0.98277 1.21245 0.99569 0.95108 0.97889 1.21259 0.99815 0.94852 0.98272 0.91279 0.93138 0.92950 0.90241 0.90477 0.85052 0.85584 0.91762 0.91152 0.86368 0.87086 0.74554 0.88564 0.93531 0.89646 0.90224 0.95734 0.95948 0.79681 0.94081 0.87462 0.89408 0.85008 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 71.98 0.71 -0.48 16 2 C -0.08 -0.73 6.06 29.85 0.18 -0.55 16 3 C -0.09 -1.19 5.13 -19.86 -0.10 -1.29 16 4 C -0.13 -1.72 9.70 22.27 0.22 -1.50 16 5 C -0.12 -1.87 9.70 22.27 0.22 -1.65 16 6 C -0.09 -1.44 5.13 -19.87 -0.10 -1.54 16 7 C -0.06 -1.01 4.64 29.85 0.14 -0.87 16 8 C -0.12 -1.72 5.68 29.85 0.17 -1.55 16 9 C 0.51 11.10 7.83 87.66 0.69 11.79 16 10 O -0.59 -18.66 15.60 -3.00 -0.05 -18.71 16 11 N -0.71 -13.32 5.36 -440.03 -2.36 -15.68 16 12 C 0.13 3.10 4.21 45.52 0.19 3.29 16 13 C -0.14 -4.20 7.45 31.21 0.23 -3.97 16 14 C -0.12 -3.59 3.76 -10.18 -0.04 -3.63 16 15 C 0.16 6.43 6.10 86.38 0.53 6.95 16 16 N -0.75 -38.72 5.60 -343.45 -1.92 -40.64 16 17 C -0.24 -13.87 9.99 84.03 0.84 -13.03 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 20 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 21 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 22 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 25 C -0.11 -2.43 7.39 31.12 0.23 -2.20 16 26 C -0.12 -1.67 9.70 22.27 0.22 -1.45 16 27 C -0.12 -1.58 9.70 22.27 0.22 -1.36 16 28 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 32 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 33 H 0.13 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.06 1.28 8.04 -2.38 -0.02 1.26 16 36 H 0.07 1.30 8.04 -2.39 -0.02 1.28 16 37 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.42 5.05 8.71 -92.71 -0.81 4.24 16 40 H 0.10 2.68 7.50 -2.39 -0.02 2.66 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 2.50 7.90 -2.39 -0.02 2.48 16 43 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.02 0.94 7.85 -2.39 -0.02 0.92 16 45 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.37 20.75 7.67 -92.71 -0.71 20.04 16 47 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 48 H 0.11 1.88 8.07 -2.39 -0.02 1.86 16 49 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 51 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -73.76 419.68 2.36 -71.40 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: -0.61 Total: 32.76 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 5.00 Total: -17.18 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -4.00 Total: -116.91 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.05 Total: -18.71 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -73.76 2.36 -71.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755220510.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.305 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds