Wall clock time and date at job start Tue Mar 31 2020 16:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47192 * 2 1 4 4 C 1.38234 * 120.00355 * 90.00521 * 3 2 1 5 5 C 1.38230 * 120.00130 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00231 * 359.97101 * 5 4 3 7 7 C 1.50699 * 120.00470 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47509 * 89.99358 * 7 6 5 9 9 C 1.50701 * 109.47033 * 180.02562 * 8 7 6 10 10 O 1.21273 * 120.00237 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99632 * 180.02562 * 9 8 7 12 12 C 1.46492 * 119.99824 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.85314 * 23.80210 * 12 11 9 14 14 C 1.53784 * 113.61518 * 154.99899 * 12 11 9 15 15 C 1.53785 * 87.08075 * 89.11597 * 14 12 11 16 16 H 1.08993 * 113.61640 * 270.80168 * 15 14 12 17 17 C 1.52999 * 113.61493 * 139.98131 * 15 14 12 18 18 N 1.46498 * 109.47072 * 176.53221 * 17 15 14 19 19 C 1.36943 * 119.99727 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00392 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99586 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00460 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99694 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00129 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00122 * 23 21 19 27 27 C 1.53789 * 87.17154 * 25.39071 * 15 14 12 28 28 C 1.38238 * 120.00055 * 0.27423 * 6 5 4 29 29 C 1.38236 * 119.99744 * 359.54414 * 28 6 5 30 30 H 1.09003 * 109.46916 * 300.00367 * 1 2 3 31 31 H 1.09000 * 109.46713 * 59.99755 * 1 2 3 32 32 H 1.08995 * 109.47361 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46916 * 239.99633 * 2 1 3 34 34 H 1.09000 * 109.46713 * 120.00245 * 2 1 3 35 35 H 1.08000 * 119.99596 * 359.97438 * 4 3 2 36 36 H 1.08005 * 120.00214 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.46626 * 329.99980 * 7 6 5 38 38 H 1.08997 * 109.47245 * 210.00042 * 7 6 5 39 39 H 1.09002 * 109.46668 * 60.00648 * 8 7 6 40 40 H 1.08997 * 109.47426 * 300.00573 * 8 7 6 41 41 H 0.97004 * 119.99838 * 0.02562 * 11 9 8 42 42 H 1.08999 * 113.61286 * 334.57345 * 14 12 11 43 43 H 1.09001 * 113.69393 * 203.67370 * 14 12 11 44 44 H 1.09000 * 109.46925 * 56.53045 * 17 15 14 45 45 H 1.09007 * 109.47238 * 296.53070 * 17 15 14 46 46 H 0.96998 * 120.00095 * 359.97438 * 18 17 15 47 47 H 0.97001 * 119.99952 * 359.97438 * 22 21 19 48 48 H 1.09007 * 113.61107 * 89.15711 * 27 15 14 49 49 H 1.08999 * 113.61407 * 220.05466 * 27 15 14 50 50 H 1.07999 * 120.00432 * 179.72906 * 28 6 5 51 51 H 1.07998 * 120.00356 * 180.22516 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2629 2.0724 1.1971 5 6 2.7242 3.3755 1.1970 6 6 2.9556 4.0268 0.0000 7 6 3.4590 5.4472 -0.0002 8 6 4.9890 5.4461 0.0005 9 6 5.4924 6.8665 0.0011 10 8 4.7050 7.7889 0.0013 11 7 6.8177 7.1118 0.0012 12 6 7.3070 8.4926 0.0023 13 1 6.5822 9.1983 0.4082 14 6 8.7165 8.6462 0.5979 15 6 9.2572 8.3994 -0.8204 16 1 9.4277 7.3467 -1.0457 17 6 10.4502 9.2855 -1.1844 18 7 10.9423 8.9197 -2.5149 19 6 12.0126 9.5817 -3.0549 20 1 12.4937 10.3736 -2.5001 21 6 12.4792 9.2347 -4.3153 22 7 11.8926 8.2699 -4.9917 23 14 13.9387 10.1381 -5.0522 24 1 14.2377 9.5821 -6.3964 25 1 15.1224 9.9673 -4.1720 26 1 13.6167 11.5827 -5.1740 27 6 7.9124 8.9313 -1.3435 28 6 2.7202 3.3769 -1.1972 29 6 2.2625 2.0725 -1.1972 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0826 1.5634 2.1324 36 1 2.9039 3.8848 2.1324 37 1 3.0957 5.9614 0.8896 38 1 3.0964 5.9611 -0.8904 39 1 5.3523 4.9318 -0.8892 40 1 5.3516 4.9321 0.8907 41 1 7.4474 6.3740 0.0006 42 1 8.9784 7.8616 1.3077 43 1 8.9252 9.6467 0.9767 44 1 11.2447 9.1441 -0.4516 45 1 10.1395 10.3303 -1.1865 46 1 10.5105 8.2082 -3.0130 47 1 11.1345 7.8010 -4.6092 48 1 7.8997 10.0105 -1.4969 49 1 7.5263 8.3767 -2.1987 50 1 2.8968 3.8871 -2.1326 51 1 2.0821 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755483033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:54 Heat of formation + Delta-G solvation = -8.162349 kcal Electronic energy + Delta-G solvation = -26441.392350 eV Core-core repulsion = 22726.299727 eV Total energy + Delta-G solvation = -3715.092623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.38077 -39.79856 -38.43586 -35.46486 -34.77890 -33.32201 -32.70577 -31.22814 -30.77445 -29.18313 -26.69241 -25.57341 -25.27073 -23.36947 -23.04343 -22.83417 -21.63047 -20.94321 -20.45166 -19.11067 -17.44533 -17.20222 -16.30842 -16.27243 -16.00178 -15.43654 -15.39202 -14.98988 -14.70948 -14.18605 -14.13407 -13.85794 -13.72096 -13.66224 -13.51998 -13.48603 -13.21205 -13.03119 -12.67304 -12.49297 -12.25171 -12.11936 -11.82673 -11.78207 -11.66740 -11.33418 -11.12846 -11.07199 -10.73368 -10.71066 -10.53106 -10.31531 -10.01744 -9.96726 -9.91746 -9.21961 -9.14593 -9.02837 -8.84152 -8.80503 -6.97295 -6.08927 -3.07739 1.00263 1.10632 2.51968 3.02478 3.44468 3.52429 3.56252 3.73647 4.32044 4.43102 4.46505 4.62285 4.63409 4.67908 4.69570 4.74806 4.77728 4.89504 4.93201 4.97660 5.05330 5.07241 5.12134 5.18962 5.20416 5.30130 5.47649 5.52198 5.56564 5.62859 5.67732 5.68010 5.78015 5.80384 5.81268 5.87382 5.89237 5.92614 6.01461 6.12495 6.16174 6.20645 6.30564 6.32142 6.35615 6.58216 6.70983 6.71299 6.86205 7.40636 7.82511 8.12399 8.77732 9.25946 10.12343 10.27787 11.39836 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.001657 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.922412 B =16890.042505 C =18018.766942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.088 4.088 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.086 4.086 7 C -0.064 4.064 8 C -0.135 4.135 9 C 0.514 3.486 10 O -0.542 6.542 11 N -0.711 5.711 12 C 0.116 3.884 13 H 0.099 0.901 14 C -0.137 4.137 15 C -0.115 4.115 16 H 0.085 0.915 17 C 0.168 3.832 18 N -0.743 5.743 19 C -0.331 4.331 20 H 0.064 0.936 21 C -0.047 4.047 22 N -0.945 5.945 23 Si 1.080 2.920 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.295 1.295 27 C -0.139 4.139 28 C -0.112 4.112 29 C -0.116 4.116 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.401 0.599 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.019 0.981 45 H 0.021 0.979 46 H 0.366 0.634 47 H 0.254 0.746 48 H 0.090 0.910 49 H 0.067 0.933 50 H 0.123 0.877 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.102 -14.980 14.858 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.088 4.088 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.086 4.086 7 C -0.102 4.102 8 C -0.175 4.175 9 C 0.301 3.699 10 O -0.419 6.419 11 N -0.362 5.362 12 C 0.011 3.989 13 H 0.117 0.883 14 C -0.176 4.176 15 C -0.134 4.134 16 H 0.104 0.896 17 C 0.040 3.960 18 N -0.388 5.388 19 C -0.462 4.462 20 H 0.082 0.918 21 C -0.244 4.244 22 N -0.591 5.591 23 Si 0.911 3.089 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.177 4.177 28 C -0.130 4.130 29 C -0.134 4.134 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.236 0.764 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.036 0.964 45 H 0.039 0.961 46 H 0.199 0.801 47 H 0.065 0.935 48 H 0.109 0.891 49 H 0.086 0.914 50 H 0.141 0.859 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.560 -14.017 13.653 29.116 hybrid contribution -0.655 -0.648 1.184 1.500 sum -22.215 -14.665 14.837 30.475 Atomic orbital electron populations 1.21750 0.94724 1.01694 1.02244 1.20547 0.96191 0.92724 1.02836 1.19903 0.99351 0.96266 0.93261 1.21004 1.00115 0.94904 0.97481 1.21051 0.99648 0.94782 0.97633 1.19897 0.99440 0.96011 0.93229 1.20321 0.93100 0.92226 1.04557 1.21663 0.97027 0.93972 1.04832 1.20692 0.82174 0.91565 0.75465 1.90700 1.55293 1.46490 1.49461 1.45738 1.06996 1.08433 1.74988 1.21960 0.95566 0.83377 0.98045 0.88281 1.23295 0.94339 1.02876 0.97076 1.22772 0.95340 1.00379 0.94916 0.89640 1.20572 0.92230 0.95195 0.87972 1.42347 1.37400 1.43318 1.15776 1.20054 1.08128 1.15899 1.02159 0.91837 1.25777 1.04479 1.00214 0.93923 1.70884 1.24093 1.24391 1.39689 0.83239 0.74740 0.74755 0.76157 1.21033 1.22293 1.22276 1.23438 0.95838 1.01852 0.96616 1.21096 0.99362 0.94778 0.97758 1.21031 0.99935 0.94874 0.97540 0.92579 0.92540 0.92407 0.91045 0.91100 0.86253 0.86068 0.90195 0.90096 0.88603 0.88773 0.76415 0.91245 0.88711 0.96365 0.96134 0.80097 0.93489 0.89149 0.91450 0.85929 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.90 37.16 0.37 -0.39 16 2 C -0.09 -0.49 6.06 -27.88 -0.17 -0.65 16 3 C -0.09 -0.66 5.13 -104.62 -0.54 -1.20 16 4 C -0.12 -0.88 9.70 -39.59 -0.38 -1.27 16 5 C -0.11 -0.90 9.70 -39.59 -0.38 -1.28 16 6 C -0.09 -0.73 5.13 -104.63 -0.54 -1.27 16 7 C -0.06 -0.57 4.63 -27.88 -0.13 -0.70 16 8 C -0.13 -1.13 5.68 -27.88 -0.16 -1.29 16 9 C 0.51 6.04 7.83 -10.98 -0.09 5.96 16 10 O -0.54 -8.45 15.58 5.56 0.09 -8.37 16 11 N -0.71 -7.80 5.26 -52.93 -0.28 -8.08 16 12 C 0.12 1.46 4.33 -67.03 -0.29 1.17 16 13 H 0.10 1.34 7.46 -51.93 -0.39 0.95 16 14 C -0.14 -1.66 7.39 -25.92 -0.19 -1.85 16 15 C -0.12 -1.78 3.62 -89.80 -0.33 -2.11 16 16 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 17 C 0.17 3.40 6.08 -4.04 -0.02 3.38 16 18 N -0.74 -19.05 5.60 -59.91 -0.34 -19.39 16 19 C -0.33 -9.57 9.99 -15.06 -0.15 -9.72 16 20 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.05 -1.38 5.50 -17.43 -0.10 -1.47 16 22 N -0.94 -29.60 13.70 55.49 0.76 -28.84 16 23 Si 1.08 26.25 29.92 -169.99 -5.09 21.16 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 27 C -0.14 -2.08 7.44 -25.82 -0.19 -2.27 16 28 C -0.11 -0.94 9.70 -39.58 -0.38 -1.32 16 29 C -0.12 -0.91 9.70 -39.58 -0.38 -1.30 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 37 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 38 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.40 3.56 8.70 -40.82 -0.36 3.21 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.02 0.43 7.88 -51.93 -0.41 0.02 16 46 H 0.37 9.57 6.50 -40.82 -0.27 9.30 16 47 H 0.25 7.83 6.77 -40.82 -0.28 7.55 16 48 H 0.09 1.40 7.92 -51.93 -0.41 0.99 16 49 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 50 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 51 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 417.84 15.07 6.30 6.30 Total: -1.00 -34.68 417.84 -11.51 -46.20 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -8.90 Total: 8.60 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -4.06 Total: -17.58 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.15 Total: -56.31 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.09 Total: 21.16 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.68 -11.51 -46.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755483033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.036 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds