Wall clock time and date at job start Tue Mar 31 2020 16:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47192 * 2 1 4 4 C 1.38234 * 120.00355 * 90.00521 * 3 2 1 5 5 C 1.38230 * 120.00130 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00231 * 359.97101 * 5 4 3 7 7 C 1.50699 * 120.00470 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47509 * 89.99358 * 7 6 5 9 9 C 1.50701 * 109.47033 * 180.02562 * 8 7 6 10 10 O 1.21273 * 120.00237 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99632 * 180.02562 * 9 8 7 12 12 C 1.46492 * 119.99824 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.85314 * 23.80210 * 12 11 9 14 14 C 1.53784 * 113.61518 * 154.99899 * 12 11 9 15 15 C 1.53785 * 87.08075 * 89.11597 * 14 12 11 16 16 H 1.08993 * 113.61640 * 270.80168 * 15 14 12 17 17 C 1.52999 * 113.61493 * 139.98131 * 15 14 12 18 18 N 1.46498 * 109.47072 * 176.53221 * 17 15 14 19 19 C 1.36943 * 119.99727 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00392 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99586 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00460 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99694 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00129 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00122 * 23 21 19 27 27 C 1.53789 * 87.17154 * 25.39071 * 15 14 12 28 28 C 1.38238 * 120.00055 * 0.27423 * 6 5 4 29 29 C 1.38236 * 119.99744 * 359.54414 * 28 6 5 30 30 H 1.09003 * 109.46916 * 300.00367 * 1 2 3 31 31 H 1.09000 * 109.46713 * 59.99755 * 1 2 3 32 32 H 1.08995 * 109.47361 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46916 * 239.99633 * 2 1 3 34 34 H 1.09000 * 109.46713 * 120.00245 * 2 1 3 35 35 H 1.08000 * 119.99596 * 359.97438 * 4 3 2 36 36 H 1.08005 * 120.00214 * 179.97438 * 5 4 3 37 37 H 1.09002 * 109.46626 * 329.99980 * 7 6 5 38 38 H 1.08997 * 109.47245 * 210.00042 * 7 6 5 39 39 H 1.09002 * 109.46668 * 60.00648 * 8 7 6 40 40 H 1.08997 * 109.47426 * 300.00573 * 8 7 6 41 41 H 0.97004 * 119.99838 * 0.02562 * 11 9 8 42 42 H 1.08999 * 113.61286 * 334.57345 * 14 12 11 43 43 H 1.09001 * 113.69393 * 203.67370 * 14 12 11 44 44 H 1.09000 * 109.46925 * 56.53045 * 17 15 14 45 45 H 1.09007 * 109.47238 * 296.53070 * 17 15 14 46 46 H 0.96998 * 120.00095 * 359.97438 * 18 17 15 47 47 H 0.97001 * 119.99952 * 359.97438 * 22 21 19 48 48 H 1.09007 * 113.61107 * 89.15711 * 27 15 14 49 49 H 1.08999 * 113.61407 * 220.05466 * 27 15 14 50 50 H 1.07999 * 120.00432 * 179.72906 * 28 6 5 51 51 H 1.07998 * 120.00356 * 180.22516 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2629 2.0724 1.1971 5 6 2.7242 3.3755 1.1970 6 6 2.9556 4.0268 0.0000 7 6 3.4590 5.4472 -0.0002 8 6 4.9890 5.4461 0.0005 9 6 5.4924 6.8665 0.0011 10 8 4.7050 7.7889 0.0013 11 7 6.8177 7.1118 0.0012 12 6 7.3070 8.4926 0.0023 13 1 6.5822 9.1983 0.4082 14 6 8.7165 8.6462 0.5979 15 6 9.2572 8.3994 -0.8204 16 1 9.4277 7.3467 -1.0457 17 6 10.4502 9.2855 -1.1844 18 7 10.9423 8.9197 -2.5149 19 6 12.0126 9.5817 -3.0549 20 1 12.4937 10.3736 -2.5001 21 6 12.4792 9.2347 -4.3153 22 7 11.8926 8.2699 -4.9917 23 14 13.9387 10.1381 -5.0522 24 1 14.2377 9.5821 -6.3964 25 1 15.1224 9.9673 -4.1720 26 1 13.6167 11.5827 -5.1740 27 6 7.9124 8.9313 -1.3435 28 6 2.7202 3.3769 -1.1972 29 6 2.2625 2.0725 -1.1972 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0826 1.5634 2.1324 36 1 2.9039 3.8848 2.1324 37 1 3.0957 5.9614 0.8896 38 1 3.0964 5.9611 -0.8904 39 1 5.3523 4.9318 -0.8892 40 1 5.3516 4.9321 0.8907 41 1 7.4474 6.3740 0.0006 42 1 8.9784 7.8616 1.3077 43 1 8.9252 9.6467 0.9767 44 1 11.2447 9.1441 -0.4516 45 1 10.1395 10.3303 -1.1865 46 1 10.5105 8.2082 -3.0130 47 1 11.1345 7.8010 -4.6092 48 1 7.8997 10.0105 -1.4969 49 1 7.5263 8.3767 -2.1987 50 1 2.8968 3.8871 -2.1326 51 1 2.0821 1.5635 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755483033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:53 Heat of formation + Delta-G solvation = -27.635379 kcal Electronic energy + Delta-G solvation = -26442.236764 eV Core-core repulsion = 22726.299727 eV Total energy + Delta-G solvation = -3715.937037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.37302 -40.45521 -39.53661 -36.70048 -36.03219 -34.52743 -33.40645 -32.62080 -31.79927 -29.85355 -28.24979 -26.70896 -26.10882 -25.12493 -23.65057 -23.61699 -23.00627 -21.71484 -21.15710 -20.32968 -19.29785 -18.32848 -17.15589 -16.95161 -16.91945 -16.69196 -16.17956 -16.07467 -15.93346 -15.64756 -15.18136 -14.92761 -14.86983 -14.59899 -14.47398 -14.31122 -14.10233 -13.90803 -13.79203 -13.42988 -13.26874 -13.03079 -12.73543 -12.67228 -12.56495 -12.38630 -12.31191 -11.95415 -11.89376 -11.88207 -11.67181 -11.63870 -11.61924 -11.35716 -11.07918 -10.95506 -10.87015 -10.06930 -9.80617 -9.39809 -9.10934 -8.41817 -5.34885 0.40947 0.51893 1.57643 1.58694 1.67835 1.84354 2.13630 2.70625 2.84449 3.37380 3.48398 3.52627 3.63210 3.83680 3.86162 3.89034 3.91008 4.04819 4.12087 4.13527 4.17130 4.28414 4.36131 4.47100 4.51637 4.61274 4.62222 4.65262 4.68683 4.72345 4.76932 4.81689 4.86518 4.89656 4.93518 5.06149 5.06499 5.09077 5.09234 5.18635 5.22730 5.25046 5.29943 5.38238 5.54629 5.56137 5.63374 5.74184 5.75618 6.14236 6.48070 6.52329 7.09072 7.22137 8.00065 8.10758 9.10358 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.001657 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.922412 B =16890.042505 C =18018.766942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.124 4.124 5 C -0.119 4.119 6 C -0.094 4.094 7 C -0.058 4.058 8 C -0.125 4.125 9 C 0.513 3.487 10 O -0.584 6.584 11 N -0.703 5.703 12 C 0.127 3.873 13 H 0.093 0.907 14 C -0.116 4.116 15 C -0.112 4.112 16 H 0.087 0.913 17 C 0.165 3.835 18 N -0.756 5.756 19 C -0.339 4.339 20 H 0.065 0.935 21 C -0.105 4.105 22 N -0.974 5.974 23 Si 1.129 2.871 24 H -0.292 1.292 25 H -0.276 1.276 26 H -0.279 1.279 27 C -0.144 4.144 28 C -0.125 4.125 29 C -0.126 4.126 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.414 0.586 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.020 0.980 45 H 0.017 0.983 46 H 0.360 0.640 47 H 0.243 0.757 48 H 0.081 0.919 49 H 0.051 0.949 50 H 0.125 0.875 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.881 -15.906 16.462 31.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.094 4.094 7 C -0.096 4.096 8 C -0.165 4.165 9 C 0.301 3.699 10 O -0.464 6.464 11 N -0.355 5.355 12 C 0.021 3.979 13 H 0.111 0.889 14 C -0.154 4.154 15 C -0.131 4.131 16 H 0.105 0.895 17 C 0.039 3.961 18 N -0.401 5.401 19 C -0.470 4.470 20 H 0.083 0.917 21 C -0.296 4.296 22 N -0.622 5.622 23 Si 0.953 3.047 24 H -0.218 1.218 25 H -0.202 1.202 26 H -0.205 1.205 27 C -0.183 4.183 28 C -0.143 4.143 29 C -0.144 4.144 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.136 0.864 41 H 0.251 0.749 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.038 0.962 45 H 0.035 0.965 46 H 0.192 0.808 47 H 0.054 0.946 48 H 0.099 0.901 49 H 0.070 0.930 50 H 0.143 0.857 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.340 -14.954 15.310 30.223 hybrid contribution -0.777 -0.355 0.717 1.116 sum -22.117 -15.309 16.027 31.312 Atomic orbital electron populations 1.21735 0.94392 1.02321 1.01796 1.20584 0.96403 0.91692 1.03528 1.20182 0.98846 0.97167 0.93153 1.21263 0.99760 0.94887 0.98263 1.21246 0.99488 0.95113 0.97881 1.19876 1.00214 0.95695 0.93655 1.20213 0.93516 0.92424 1.03467 1.21656 0.96521 0.91784 1.06499 1.21277 0.81902 0.92471 0.74229 1.90686 1.56307 1.48035 1.51416 1.45695 1.07213 1.08191 1.74361 1.21747 0.95793 0.84198 0.96150 0.88873 1.23207 0.92646 1.04303 0.95268 1.22697 0.93261 0.99388 0.97709 0.89488 1.20760 0.93913 0.95966 0.85494 1.42578 1.36917 1.42986 1.17602 1.20436 1.08615 1.15633 1.02315 0.91673 1.27251 1.06878 1.00579 0.94878 1.70996 1.24791 1.25994 1.40452 0.82624 0.72425 0.74399 0.75259 1.21799 1.20191 1.20468 1.23445 0.96179 1.01160 0.97499 1.21239 0.99805 0.95251 0.97976 1.21238 0.99982 0.94840 0.98362 0.92862 0.93153 0.91256 0.90568 0.90212 0.84605 0.84863 0.90843 0.91683 0.87416 0.86351 0.74891 0.88787 0.87807 0.96235 0.96483 0.80829 0.94648 0.90075 0.93017 0.85706 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.90 71.98 0.71 -0.59 16 2 C -0.08 -0.83 6.06 29.85 0.18 -0.65 16 3 C -0.09 -1.29 5.13 -19.87 -0.10 -1.39 16 4 C -0.12 -1.68 9.70 22.27 0.22 -1.46 16 5 C -0.12 -1.74 9.70 22.27 0.22 -1.52 16 6 C -0.09 -1.54 5.13 -19.87 -0.10 -1.65 16 7 C -0.06 -1.02 4.63 29.85 0.14 -0.88 16 8 C -0.13 -1.91 5.68 29.85 0.17 -1.74 16 9 C 0.51 11.57 7.83 87.66 0.69 12.25 16 10 O -0.58 -18.22 15.58 -3.01 -0.05 -18.27 16 11 N -0.70 -14.32 5.26 -439.77 -2.31 -16.63 16 12 C 0.13 3.05 4.33 45.58 0.20 3.24 16 13 H 0.09 2.43 7.46 -2.39 -0.02 2.41 16 14 C -0.12 -2.52 7.39 31.12 0.23 -2.29 16 15 C -0.11 -3.34 3.62 -10.26 -0.04 -3.38 16 16 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 17 C 0.16 6.59 6.08 86.38 0.53 7.12 16 18 N -0.76 -39.04 5.60 -343.45 -1.92 -40.97 16 19 C -0.34 -19.55 9.99 84.03 0.84 -18.71 16 20 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 21 C -0.10 -6.19 5.50 84.86 0.47 -5.72 16 22 N -0.97 -61.82 13.70 21.65 0.30 -61.52 16 23 Si 1.13 52.49 29.92 68.60 2.05 54.54 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 27 C -0.14 -4.30 7.44 31.18 0.23 -4.06 16 28 C -0.12 -2.05 9.70 22.27 0.22 -1.83 16 29 C -0.13 -1.90 9.70 22.27 0.22 -1.68 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.67 8.09 -2.39 -0.02 0.65 16 34 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 35 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 38 H 0.06 1.32 8.04 -2.39 -0.02 1.30 16 39 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.41 6.37 8.70 -92.71 -0.81 5.57 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.10 2.13 8.10 -2.39 -0.02 2.11 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.02 0.70 7.88 -2.38 -0.02 0.68 16 46 H 0.36 19.19 6.50 -92.71 -0.60 18.59 16 47 H 0.24 15.37 6.77 -92.71 -0.63 14.74 16 48 H 0.08 2.55 7.92 -2.38 -0.02 2.53 16 49 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.12 1.88 8.06 -2.91 -0.02 1.85 16 51 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -75.01 417.84 2.71 -72.30 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.36 Total: 35.49 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 5.00 Total: -24.94 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -3.94 Total: -119.12 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.05 Total: -18.27 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 2.05 Total: 54.54 kcal Total: -75.01 2.71 -72.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755483033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.663 kcal (2) G-P(sol) polarization free energy of solvation -75.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds