Wall clock time and date at job start Tue Mar 31 2020 15:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47482 * 2 1 4 4 C 1.52996 * 109.47355 * 172.99560 * 3 2 1 5 5 C 1.52991 * 109.47411 * 195.96691 * 4 3 2 6 6 C 1.52997 * 109.46992 * 293.00065 * 3 2 1 7 7 N 1.46900 * 109.46866 * 172.84849 * 6 3 2 8 8 C 1.46898 * 111.00021 * 252.18155 * 7 6 3 9 9 C 1.50696 * 109.47031 * 58.45244 * 8 7 6 10 10 H 1.07994 * 120.00432 * 354.48075 * 9 8 7 11 11 C 1.37890 * 119.99843 * 174.47765 * 9 8 7 12 12 N 1.31508 * 119.99748 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99658 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47301 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46808 * 119.99893 * 13 11 9 16 16 H 1.48498 * 109.46638 * 239.99559 * 13 11 9 17 17 C 1.46906 * 110.99675 * 128.22812 * 7 6 3 18 18 C 1.52995 * 109.47031 * 297.55937 * 17 7 6 19 19 C 1.50703 * 109.46901 * 177.08752 * 18 17 7 20 20 N 1.29749 * 126.28594 * 269.99899 * 19 18 17 21 21 O 1.41352 * 109.73700 * 180.02562 * 20 19 18 22 22 C 1.34822 * 109.33283 * 0.02562 * 21 20 19 23 23 C 1.38979 * 133.45034 * 180.02562 * 22 21 20 24 24 C 1.37801 * 119.79636 * 179.97438 * 23 22 21 25 25 C 1.38790 * 120.59654 * 359.97438 * 24 23 22 26 26 C 1.36620 * 120.51639 * 0.02562 * 25 24 23 27 27 C 1.39684 * 119.79176 * 359.97438 * 26 25 24 28 28 H 1.09007 * 109.46504 * 65.82206 * 1 2 3 29 29 H 1.09000 * 109.46826 * 185.81968 * 1 2 3 30 30 H 1.08999 * 109.46935 * 305.82514 * 1 2 3 31 31 H 1.09005 * 109.47337 * 239.99547 * 2 1 3 32 32 H 1.09007 * 109.46974 * 120.00114 * 2 1 3 33 33 H 1.08999 * 109.46790 * 52.99659 * 3 2 1 34 34 H 1.09000 * 109.47229 * 315.97433 * 4 3 2 35 35 H 1.09004 * 109.46604 * 75.96798 * 4 3 2 36 36 H 1.09003 * 109.47013 * 319.29768 * 5 4 3 37 37 H 1.09003 * 109.47279 * 79.29654 * 5 4 3 38 38 H 1.08997 * 109.47753 * 199.29713 * 5 4 3 39 39 H 1.08995 * 109.47504 * 52.84817 * 6 3 2 40 40 H 1.08997 * 109.47134 * 292.84702 * 6 3 2 41 41 H 1.09002 * 109.47022 * 178.45696 * 8 7 6 42 42 H 1.08999 * 109.47265 * 298.45001 * 8 7 6 43 43 H 0.97004 * 119.99775 * 180.02562 * 12 11 9 44 44 H 1.08998 * 109.46813 * 177.55753 * 17 7 6 45 45 H 1.08995 * 109.47069 * 57.56439 * 17 7 6 46 46 H 1.08995 * 109.47273 * 57.08666 * 18 17 7 47 47 H 1.09001 * 109.47011 * 297.07789 * 18 17 7 48 48 H 1.08001 * 120.10109 * 359.97438 * 23 22 21 49 49 H 1.08003 * 119.70170 * 179.97438 * 24 23 22 50 50 H 1.07999 * 119.73868 * 179.71996 * 25 24 23 51 51 H 1.08001 * 120.10526 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5599 1.4460 0.1759 5 6 4.0242 2.8489 0.5720 6 6 1.6787 2.1112 -1.3278 7 7 2.0141 3.5399 -1.2637 8 6 0.8000 4.3623 -1.1772 9 6 0.0099 3.9646 0.0428 10 1 0.3254 3.1216 0.6395 11 6 -1.1161 4.6772 0.3974 12 7 -1.5001 5.7041 -0.3289 13 14 -2.0952 4.1847 1.9101 14 1 -1.4578 3.0060 2.5501 15 1 -2.1220 5.3156 2.8721 16 1 -3.4836 3.8414 1.5108 17 6 2.8396 3.9388 -2.4116 18 6 4.1640 3.1737 -2.3778 19 6 4.9808 3.5293 -3.5933 20 7 4.9552 2.9227 -4.7400 21 8 5.8600 3.5454 -5.6297 22 6 6.4649 4.5747 -5.0033 23 6 7.4190 5.5054 -5.3969 24 6 7.8501 6.4632 -4.5048 25 6 7.3395 6.5081 -3.2150 26 6 6.4010 5.6023 -2.8085 27 6 5.9506 4.6233 -3.6973 28 1 -0.3632 0.4209 -0.9376 29 1 -0.3633 -1.0224 0.1042 30 1 -0.3633 0.6015 0.8332 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5781 1.9912 0.8207 34 1 3.8370 0.7376 0.9566 35 1 4.0348 1.1573 -0.7618 36 1 3.4717 3.5908 -0.0047 37 1 3.8416 3.0055 1.6351 38 1 5.0901 2.9502 0.3677 39 1 0.6108 1.9966 -1.5136 40 1 2.2403 1.6420 -2.1356 41 1 1.0779 5.4137 -1.1034 42 1 0.1929 4.2089 -2.0693 43 1 -2.2920 6.2057 -0.0792 44 1 3.0372 5.0096 -2.3623 45 1 2.3108 3.7093 -3.3366 46 1 3.9646 2.1021 -2.3749 47 1 4.7163 3.4430 -1.4775 48 1 7.8214 5.4781 -6.3987 49 1 8.5919 7.1855 -4.8121 50 1 7.6905 7.2618 -2.5258 51 1 6.0085 5.6430 -1.8031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593959607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:57 Heat of formation + Delta-G solvation = 54.734499 kcal Electronic energy + Delta-G solvation = -29223.150580 eV Core-core repulsion = 25510.785369 eV Total energy + Delta-G solvation = -3712.365211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.83173 -38.54060 -37.85381 -35.37867 -34.34084 -32.64394 -31.58470 -30.84234 -30.21511 -29.92212 -27.51452 -26.22129 -24.50509 -23.48089 -22.81622 -22.72937 -21.46463 -20.51903 -20.14282 -19.31734 -17.62890 -17.23756 -16.46437 -15.96733 -15.68807 -15.42035 -15.07992 -14.55831 -14.25391 -14.13311 -14.05676 -13.61399 -13.40734 -13.16866 -12.79849 -12.64575 -12.52674 -12.45867 -12.34475 -12.14258 -11.98388 -11.53824 -11.51932 -11.31382 -11.28485 -10.99743 -10.98072 -10.86884 -10.81271 -10.68217 -10.51411 -10.35580 -10.20388 -9.86856 -9.77752 -9.45317 -9.10751 -8.99116 -8.76324 -8.46492 -7.19594 -6.05340 -4.05581 0.48950 1.10250 1.97073 2.47568 3.28479 3.36914 3.39851 3.42318 3.94464 4.18486 4.40225 4.42923 4.70455 4.79851 4.96234 5.12971 5.16906 5.27720 5.31396 5.33076 5.34898 5.42208 5.51734 5.62143 5.68229 5.74828 5.81451 5.91189 5.95572 5.98477 6.00936 6.05509 6.14840 6.15404 6.20147 6.27100 6.29416 6.39236 6.46322 6.49402 6.54750 6.56855 6.66150 6.74416 6.89035 7.03277 7.20037 7.20812 7.23860 7.47737 7.85044 8.00337 8.14261 8.47993 9.03246 9.58681 11.06040 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013580 B = 0.003302 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.425494 B = 8478.123712 C = 9412.137792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.085 4.085 4 C -0.107 4.107 5 C -0.181 4.181 6 C 0.065 3.935 7 N -0.525 5.525 8 C 0.192 3.808 9 C -0.507 4.507 10 H 0.074 0.926 11 C 0.057 3.943 12 N -0.898 5.898 13 Si 0.891 3.109 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.286 1.286 17 C 0.062 3.938 18 C -0.065 4.065 19 C 0.146 3.854 20 N -0.290 5.290 21 O -0.101 6.101 22 C 0.082 3.918 23 C -0.131 4.131 24 C -0.063 4.063 25 C -0.154 4.154 26 C -0.032 4.032 27 C -0.191 4.191 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.121 0.879 37 H 0.040 0.960 38 H 0.029 0.971 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.034 0.966 42 H -0.013 1.013 43 H 0.260 0.740 44 H 0.074 0.926 45 H 0.029 0.971 46 H 0.095 0.905 47 H 0.111 0.889 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.134 0.866 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.969 -2.227 -4.325 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.104 4.104 4 C -0.144 4.144 5 C -0.238 4.238 6 C -0.063 4.063 7 N -0.249 5.249 8 C 0.067 3.933 9 C -0.545 4.545 10 H 0.092 0.908 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.195 1.195 15 H -0.211 1.211 16 H -0.212 1.212 17 C -0.068 4.068 18 C -0.103 4.103 19 C -0.035 4.035 20 N -0.035 5.035 21 O -0.109 6.109 22 C 0.028 3.972 23 C -0.151 4.151 24 C -0.082 4.082 25 C -0.172 4.172 26 C -0.052 4.052 27 C -0.195 4.195 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.005 0.995 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.047 0.953 46 H 0.114 0.886 47 H 0.129 0.871 48 H 0.154 0.846 49 H 0.155 0.845 50 H 0.152 0.848 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 16.614 -2.988 -4.764 17.540 hybrid contribution -0.794 0.261 0.423 0.936 sum 15.820 -2.728 -4.341 16.630 Atomic orbital electron populations 1.21800 0.95909 1.00283 1.02917 1.21557 0.96024 0.97200 1.00671 1.21363 0.94984 0.94236 0.99770 1.21507 0.95893 0.97434 0.99578 1.22468 0.99321 0.99728 1.02260 1.22154 1.00232 0.88456 0.95483 1.62102 1.21897 1.03896 1.36988 1.19850 0.84267 0.92949 0.96211 1.21339 1.08487 1.14554 1.10163 0.90848 1.24959 0.97577 0.95036 0.96855 1.69964 1.25315 1.19452 1.39009 0.86549 0.79917 0.78557 0.83089 1.19540 1.21118 1.21225 1.21966 0.91732 0.99348 0.93786 1.20941 0.95458 1.02783 0.91153 1.24858 0.92840 0.90622 0.95216 1.79928 1.07100 1.15698 1.00760 1.89143 1.48710 1.38639 1.34428 1.20343 0.94692 0.90502 0.91678 1.20026 0.98377 0.95158 1.01542 1.21137 0.97835 0.96294 0.92935 1.20822 0.99022 1.00537 0.96801 1.20577 0.94119 0.91346 0.99160 1.20788 1.02189 1.00975 0.95542 0.92297 0.93982 0.92275 0.93015 0.92780 0.89087 0.93913 0.93422 0.86069 0.94063 0.95181 0.92007 0.94147 0.94772 0.99486 0.93054 0.90757 0.95308 0.88649 0.87054 0.84607 0.84464 0.84783 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.58 37.16 0.36 -1.97 16 2 C -0.12 -1.68 5.37 -26.73 -0.14 -1.83 16 3 C -0.08 -1.37 1.90 -90.62 -0.17 -1.55 16 4 C -0.11 -1.52 4.96 -26.74 -0.13 -1.65 16 5 C -0.18 -2.65 7.92 37.15 0.29 -2.35 16 6 C 0.06 1.14 3.63 -3.83 -0.01 1.13 16 7 N -0.53 -9.89 1.82 -236.08 -0.43 -10.32 16 8 C 0.19 4.60 4.55 -4.98 -0.02 4.58 16 9 C -0.51 -13.05 8.40 -34.44 -0.29 -13.34 16 10 H 0.07 1.83 4.88 -52.49 -0.26 1.57 16 11 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -25.76 13.29 55.43 0.74 -25.02 16 13 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.06 1.02 4.59 -3.82 -0.02 1.00 16 18 C -0.07 -0.90 4.23 -27.88 -0.12 -1.02 16 19 C 0.15 2.13 6.72 -80.11 -0.54 1.59 16 20 N -0.29 -4.74 12.81 34.91 0.45 -4.29 16 21 O -0.10 -1.58 12.06 7.68 0.09 -1.49 16 22 C 0.08 1.10 7.48 -38.47 -0.29 0.81 16 23 C -0.13 -1.31 10.07 -39.47 -0.40 -1.71 16 24 C -0.06 -0.51 10.02 -39.54 -0.40 -0.90 16 25 C -0.15 -1.32 9.97 -39.96 -0.40 -1.72 16 26 C -0.03 -0.34 10.05 -39.63 -0.40 -0.74 16 27 C -0.19 -2.54 6.32 -105.17 -0.67 -3.20 16 28 H 0.06 0.95 6.76 -51.93 -0.35 0.60 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.72 8.02 -51.92 -0.42 0.31 16 33 H 0.09 1.75 5.74 -51.93 -0.30 1.45 16 34 H 0.04 0.57 7.95 -51.93 -0.41 0.16 16 35 H 0.05 0.64 5.99 -51.93 -0.31 0.33 16 36 H 0.12 2.00 3.85 -51.93 -0.20 1.80 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.38 7.44 -51.93 -0.39 -0.01 16 39 H 0.06 1.24 5.53 -51.93 -0.29 0.95 16 40 H 0.04 0.66 5.85 -51.93 -0.30 0.35 16 41 H 0.03 0.89 8.12 -51.93 -0.42 0.47 16 42 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.07 1.23 8.10 -51.93 -0.42 0.80 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 1.34 4.64 -51.93 -0.24 1.10 16 47 H 0.11 1.42 5.11 -51.93 -0.27 1.15 16 48 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 50 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 51 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -29.11 389.41 -9.68 -38.79 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.93 Total: 2.02 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -3.44 Total: -21.44 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.75 Total: -39.63 kcal Atomic # 8 Polarization: -1.58 SS G_CDS: 0.09 Total: -1.49 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.11 -9.68 -38.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593959607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.521 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds