Wall clock time and date at job start Tue Mar 31 2020 17:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 H 1.08998 * 109.46906 * 184.28801 * 3 2 1 5 5 C 1.50696 * 109.46958 * 304.28643 * 3 2 1 6 6 H 1.08002 * 120.00334 * 120.00318 * 5 3 2 7 7 C 1.37878 * 120.00227 * 299.99691 * 5 3 2 8 8 N 1.31512 * 120.00038 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00164 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47193 * 60.00122 * 9 7 5 11 11 H 1.48506 * 109.47421 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47199 * 300.00415 * 9 7 5 13 13 N 1.46892 * 109.47001 * 64.28648 * 3 2 1 14 14 C 1.46905 * 111.00255 * 86.22520 * 13 3 2 15 15 C 1.52999 * 109.47351 * 183.28156 * 14 13 3 16 16 F 1.39899 * 110.88629 * 308.87939 * 15 14 13 17 17 C 1.55152 * 111.00225 * 184.99799 * 15 14 13 18 18 C 1.54327 * 102.94218 * 206.42159 * 17 15 14 19 19 N 1.47024 * 107.27014 * 22.19576 * 18 17 15 20 20 C 1.34773 * 125.64790 * 181.01608 * 19 18 17 21 21 O 1.21514 * 119.99638 * 180.02562 * 20 19 18 22 22 O 1.34632 * 120.00050 * 0.02562 * 20 19 18 23 23 C 1.45203 * 116.99917 * 180.02562 * 22 20 19 24 24 C 1.52994 * 109.47348 * 60.00203 * 23 22 20 25 25 C 1.53004 * 109.47209 * 180.02562 * 23 22 20 26 26 C 1.52998 * 109.46860 * 300.00124 * 23 22 20 27 27 C 1.47428 * 108.70170 * 1.05679 * 19 18 17 28 28 H 1.08992 * 109.47305 * 54.43005 * 1 2 3 29 29 H 1.08997 * 109.47191 * 174.43789 * 1 2 3 30 30 H 1.09005 * 109.46831 * 294.42804 * 1 2 3 31 31 H 1.09007 * 109.46794 * 240.00147 * 2 1 3 32 32 H 1.09002 * 109.47258 * 120.00632 * 2 1 3 33 33 H 0.97002 * 120.00099 * 179.97438 * 8 7 5 34 34 H 1.00898 * 111.00506 * 322.26551 * 13 3 2 35 35 H 1.09001 * 109.46581 * 303.27926 * 14 13 3 36 36 H 1.08996 * 109.47073 * 63.27628 * 14 13 3 37 37 H 1.09000 * 110.72566 * 324.78457 * 17 15 14 38 38 H 1.09002 * 110.72107 * 87.88522 * 17 15 14 39 39 H 1.09002 * 109.88195 * 141.60796 * 18 17 15 40 40 H 1.08997 * 109.88223 * 262.62016 * 18 17 15 41 41 H 1.09003 * 109.47243 * 59.99974 * 24 23 22 42 42 H 1.08995 * 109.47578 * 180.02562 * 24 23 22 43 43 H 1.09006 * 109.47303 * 300.00234 * 24 23 22 44 44 H 1.09001 * 109.46911 * 59.99595 * 25 23 22 45 45 H 1.08995 * 109.47050 * 180.02562 * 25 23 22 46 46 H 1.09003 * 109.46929 * 299.99748 * 25 23 22 47 47 H 1.09000 * 109.47578 * 60.00159 * 26 23 22 48 48 H 1.09002 * 109.46739 * 180.02562 * 26 23 22 49 49 H 1.08998 * 109.47532 * 299.99685 * 26 23 22 50 50 H 1.08997 * 110.36493 * 217.03567 * 27 19 18 51 51 H 1.08998 * 110.36691 * 94.71260 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1273 1.4434 -0.0768 5 6 1.4528 2.1828 -1.1739 6 1 0.8412 3.0577 -1.0095 7 6 1.6964 1.7435 -2.4579 8 7 2.4408 0.6780 -2.6582 9 14 0.9692 2.6616 -3.9130 10 1 1.4647 4.0615 -3.9129 11 1 1.3763 1.9921 -5.1745 12 1 -0.5122 2.6609 -3.8086 13 7 1.6367 2.1044 1.2478 14 6 2.6139 1.8547 2.3159 15 6 2.1201 2.4895 3.6175 16 9 1.7683 3.8286 3.4173 17 6 3.1831 2.3556 4.7397 18 6 2.3323 2.3838 6.0269 19 7 0.9667 1.9843 5.6563 20 6 -0.0834 1.9029 6.4972 21 8 -1.1714 1.5595 6.0790 22 8 0.0731 2.2021 7.8005 23 6 -1.1009 2.0918 8.6478 24 6 -1.6197 0.6529 8.6158 25 6 -0.7310 2.4693 10.0836 26 6 -2.1893 3.0378 8.1365 27 6 0.9366 1.6866 4.2127 28 1 -0.3633 0.5977 -0.8358 29 1 -0.3633 -1.0228 -0.0996 30 1 -0.3633 0.4250 0.9357 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.6119 0.3686 -3.5615 34 1 0.7120 1.8142 1.5286 35 1 2.7310 0.7803 2.4572 36 1 3.5735 2.2916 2.0397 37 1 3.7192 1.4105 4.6524 38 1 3.8779 3.1951 4.7150 39 1 2.7388 1.6823 6.7555 40 1 2.3260 3.3903 6.4452 41 1 -0.8442 -0.0211 8.9799 42 1 -2.5012 0.5702 9.2514 43 1 -1.8833 0.3843 7.5927 44 1 -0.3617 3.4946 10.1061 45 1 -1.6122 2.3861 10.7197 46 1 0.0446 1.7956 10.4480 47 1 -2.4530 2.7694 7.1136 48 1 -3.0705 2.9553 8.7728 49 1 -1.8199 4.0630 8.1594 50 1 -0.0051 2.0194 3.7764 51 1 1.0784 0.6194 4.0425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152157.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:38 Heat of formation + Delta-G solvation = -129.861385 kcal Electronic energy + Delta-G solvation = -30100.895521 eV Core-core repulsion = 25949.756407 eV Total energy + Delta-G solvation = -4151.139114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.34216 -40.89544 -38.60847 -36.84300 -36.26148 -34.28402 -33.05313 -31.52593 -30.45167 -28.96262 -27.66633 -27.59599 -26.60836 -25.13499 -23.42305 -22.85731 -21.87287 -20.32893 -19.63328 -19.25679 -18.10381 -17.04778 -16.64306 -16.27388 -15.88709 -15.38960 -15.09601 -15.00821 -14.74502 -14.51500 -14.20634 -13.98611 -13.83945 -13.32138 -13.19326 -13.09864 -12.77776 -12.73926 -12.50616 -12.38085 -12.29956 -12.17142 -12.13768 -12.09741 -11.74613 -11.69795 -11.54817 -11.48670 -11.08255 -10.84739 -10.61971 -10.56135 -10.54238 -10.49291 -10.16560 -9.99738 -9.74581 -9.59929 -9.01638 -8.89093 -8.34162 -7.29597 -5.97783 -3.99023 1.89043 2.72358 3.36053 3.39858 3.43960 3.64896 4.12698 4.17756 4.43261 4.46901 4.50964 4.54736 4.65633 4.66341 4.98495 5.12771 5.20050 5.23657 5.28546 5.34108 5.36888 5.38922 5.43070 5.51292 5.55358 5.61428 5.62358 5.71472 5.73009 5.83067 5.94994 6.07147 6.09336 6.13260 6.24544 6.29370 6.31976 6.35433 6.54382 6.85507 7.20995 7.23407 7.30124 7.49698 7.66270 7.87587 8.20088 8.24088 8.45710 8.57357 9.06470 9.64637 11.09255 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.002592 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.616393 B =10801.766463 C =11182.669626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.034 0.966 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.679 5.679 14 C 0.051 3.949 15 C 0.114 3.886 16 F -0.183 7.183 17 C -0.152 4.152 18 C 0.106 3.894 19 N -0.602 5.602 20 C 0.669 3.331 21 O -0.563 6.563 22 O -0.362 6.362 23 C 0.135 3.865 24 C -0.184 4.184 25 C -0.139 4.139 26 C -0.184 4.184 27 C 0.105 3.895 28 H 0.070 0.930 29 H 0.025 0.975 30 H 0.027 0.973 31 H 0.095 0.905 32 H 0.010 0.990 33 H 0.260 0.740 34 H 0.328 0.672 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.097 0.903 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 0.486 24.032 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.081 4.081 15 C 0.094 3.906 16 F -0.163 7.163 17 C -0.190 4.190 18 C -0.016 4.016 19 N -0.344 5.344 20 C 0.425 3.575 21 O -0.452 6.452 22 O -0.277 6.277 23 C 0.098 3.902 24 C -0.241 4.241 25 C -0.197 4.197 26 C -0.241 4.241 27 C -0.017 4.017 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.113 0.887 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.146 0.854 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.107 0.893 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.115 0.885 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.638 0.919 23.704 23.778 hybrid contribution -0.589 -0.473 -0.565 0.943 sum -2.226 0.446 23.139 23.250 Atomic orbital electron populations 1.21611 0.97610 0.98887 1.00798 1.22122 0.95054 1.01027 1.00361 1.19221 0.95931 0.88509 0.85411 0.94820 1.21022 1.30658 1.11524 0.89512 0.91960 1.24902 0.95506 0.95163 0.98760 1.69861 1.38766 1.23813 1.21261 0.86615 0.79513 0.79965 0.81629 1.20318 1.21550 1.20361 1.60833 1.03513 1.63333 1.03363 1.22333 0.98543 0.97678 0.89499 1.22023 0.93760 0.78866 0.95969 1.92898 1.92907 1.34328 1.96185 1.23293 0.97739 1.05206 0.92777 1.22033 0.81029 1.01086 0.97485 1.47054 1.08490 1.70332 1.08488 1.17422 0.82832 0.76914 0.80370 1.90920 1.24157 1.52740 1.77429 1.86299 1.40839 1.82343 1.18187 1.22080 0.82813 0.96525 0.88741 1.22518 1.01523 0.94788 1.05241 1.21851 1.02711 1.02700 0.92397 1.22524 0.98079 0.99005 1.04540 1.22887 1.00810 1.00399 0.77593 0.91132 0.95631 0.95449 0.88686 0.97134 0.93058 0.85379 0.94146 0.89849 0.88426 0.88227 0.90718 0.90763 0.92228 0.91136 0.89306 0.91465 0.90143 0.91530 0.89264 0.91149 0.92133 0.88463 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.40 37.16 0.35 -2.41 16 2 C -0.15 -3.29 5.52 -26.73 -0.15 -3.44 16 3 C 0.22 5.16 2.33 -68.87 -0.16 5.00 16 4 H 0.03 0.88 7.82 -51.93 -0.41 0.48 16 5 C -0.49 -13.05 7.28 -34.44 -0.25 -13.30 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 8 N -0.90 -24.91 11.36 55.43 0.63 -24.28 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -13.81 6.07 -107.96 -0.66 -14.46 16 14 C 0.05 0.81 4.82 -3.82 -0.02 0.80 16 15 C 0.11 1.58 1.34 -88.47 -0.12 1.46 16 16 F -0.18 -3.11 16.82 2.25 0.04 -3.08 16 17 C -0.15 -1.51 6.23 -24.90 -0.16 -1.67 16 18 C 0.11 1.09 6.89 -3.06 -0.02 1.06 16 19 N -0.60 -7.95 3.33 -176.30 -0.59 -8.54 16 20 C 0.67 9.61 7.93 54.05 0.43 10.04 16 21 O -0.56 -9.28 12.14 -19.28 -0.23 -9.51 16 22 O -0.36 -4.48 9.49 -40.30 -0.38 -4.86 16 23 C 0.14 1.36 1.13 -90.62 -0.10 1.25 16 24 C -0.18 -1.79 8.37 37.15 0.31 -1.48 16 25 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 26 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 27 C 0.10 1.45 5.63 -2.53 -0.01 1.44 16 28 H 0.07 1.64 6.88 -51.93 -0.36 1.28 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.51 6.62 -51.93 -0.34 0.17 16 31 H 0.09 2.42 6.20 -51.93 -0.32 2.10 16 32 H 0.01 0.21 7.41 -51.93 -0.38 -0.18 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.33 6.46 5.98 -39.29 -0.23 6.22 16 35 H 0.04 0.61 7.22 -51.93 -0.37 0.24 16 36 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 37 H 0.10 0.81 8.04 -51.93 -0.42 0.39 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.10 1.52 7.98 -51.93 -0.41 1.10 16 51 H 0.09 1.14 7.91 -51.93 -0.41 0.73 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -30.14 397.09 -8.48 -38.62 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -8.89 Total: 5.83 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 0.65 Total: -2.00 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.61 Total: -47.28 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.62 Total: -14.37 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.14 -8.48 -38.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152157.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.244 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds