Wall clock time and date at job start Tue Mar 31 2020 17:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47062 * 2 1 4 4 H 1.08999 * 109.47049 * 305.64006 * 3 2 1 5 5 C 1.50699 * 109.46862 * 185.64141 * 3 2 1 6 6 H 1.08005 * 119.99984 * 239.99548 * 5 3 2 7 7 C 1.37881 * 120.00170 * 59.99923 * 5 3 2 8 8 N 1.31516 * 119.99612 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00209 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47052 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47019 * 119.99847 * 9 7 5 12 12 H 1.48495 * 109.47098 * 240.00109 * 9 7 5 13 13 N 1.46897 * 109.47139 * 65.64133 * 3 2 1 14 14 C 1.46900 * 110.99757 * 204.36520 * 13 3 2 15 15 H 1.08997 * 109.71185 * 324.89404 * 14 13 3 16 16 C 1.53362 * 109.71273 * 204.25953 * 14 13 3 17 17 C 1.52689 * 108.25145 * 171.31153 * 16 14 13 18 18 C 1.50734 * 110.77843 * 50.76671 * 17 16 14 19 19 C 1.34812 * 122.73414 * 342.21801 * 18 17 16 20 20 C 1.40913 * 119.66528 * 180.79608 * 19 18 17 21 21 C 1.36066 * 119.94560 * 359.58922 * 20 19 18 22 22 C 1.40544 * 118.97293 * 359.77600 * 21 20 19 23 23 O 1.22066 * 120.12208 * 180.13235 * 22 21 20 24 24 N 1.34271 * 119.76259 * 0.15049 * 22 21 20 25 25 C 1.46498 * 119.23562 * 180.28561 * 24 22 21 26 26 C 1.53002 * 109.47116 * 89.99679 * 25 24 22 27 27 C 1.52997 * 117.49985 * 175.00113 * 26 25 24 28 28 C 1.52994 * 60.03225 * 107.50563 * 27 26 25 29 29 C 1.50640 * 122.96064 * 0.77948 * 19 18 17 30 30 H 1.08993 * 109.47362 * 293.76704 * 1 2 3 31 31 H 1.09006 * 109.46893 * 53.76323 * 1 2 3 32 32 H 1.08998 * 109.47178 * 173.76464 * 1 2 3 33 33 H 1.08997 * 109.47274 * 239.99448 * 2 1 3 34 34 H 1.09004 * 109.47032 * 119.99701 * 2 1 3 35 35 H 0.97006 * 119.99830 * 179.97438 * 8 7 5 36 36 H 1.00901 * 111.00073 * 328.31688 * 13 3 2 37 37 H 1.09002 * 109.71028 * 291.00466 * 16 14 13 38 38 H 1.08998 * 109.70768 * 51.62035 * 16 14 13 39 39 H 1.09001 * 109.23255 * 171.28375 * 17 16 14 40 40 H 1.08996 * 109.23037 * 290.65070 * 17 16 14 41 41 H 1.08002 * 120.02323 * 179.57033 * 20 19 18 42 42 H 1.08004 * 120.51020 * 179.79612 * 21 20 19 43 43 H 1.09002 * 109.46921 * 330.00218 * 25 24 22 44 44 H 1.08998 * 109.47468 * 210.00301 * 25 24 22 45 45 H 1.09007 * 115.56022 * 29.32077 * 26 25 24 46 46 H 1.09001 * 117.49813 * 0.02562 * 27 26 25 47 47 H 1.08998 * 117.50285 * 215.00792 * 27 26 25 48 48 H 1.09005 * 117.49939 * 107.47872 * 28 27 26 49 49 H 1.09000 * 117.50152 * 252.47779 * 28 27 26 50 50 H 1.08997 * 109.22608 * 102.59730 * 29 19 18 51 51 H 1.08996 * 109.22290 * 221.99507 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4448 -0.1397 6 1 4.1540 1.8865 0.6317 7 6 4.1302 0.8830 -1.2522 8 7 3.3831 0.3447 -2.1912 9 14 5.9901 0.8864 -1.4257 10 1 6.5964 1.5469 -0.2420 11 1 6.4813 -0.5121 -1.5172 12 1 6.3712 1.6264 -2.6554 13 7 1.6647 2.0946 1.2617 14 6 1.5988 3.5533 1.1010 15 1 2.3673 3.8812 0.4011 16 6 1.8107 4.2334 2.4592 17 6 1.9534 5.7354 2.2248 18 6 0.8215 6.2539 1.3750 19 6 0.0444 5.4472 0.6248 20 6 -0.9862 6.0034 -0.1589 21 6 -1.1973 7.3475 -0.1487 22 6 -0.3781 8.1592 0.6546 23 8 -0.5505 9.3674 0.6815 24 7 0.5953 7.6011 1.3921 25 6 1.4383 8.4573 2.2302 26 6 0.8079 8.5925 3.6177 27 6 1.5991 9.3558 4.6818 28 6 0.3543 9.9873 4.0555 29 6 0.2210 3.9520 0.5769 30 1 -0.3634 0.4141 0.9404 31 1 -0.3633 0.6075 -0.8290 32 1 -0.3633 -1.0216 -0.1116 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.7980 -0.0503 -2.9741 36 1 0.7915 1.7295 1.6116 37 1 0.9531 4.0418 3.1041 38 1 2.7163 3.8466 2.9266 39 1 1.9494 6.2507 3.1853 40 1 2.8977 5.9314 1.7170 41 1 -1.6077 5.3632 -0.7674 42 1 -1.9824 7.7839 -0.7484 43 1 1.5237 9.4429 1.7724 44 1 2.4292 8.0127 2.3229 45 1 0.2109 7.7424 3.9479 46 1 2.5686 9.7621 4.3932 47 1 1.5229 9.0077 5.7119 48 1 -0.5412 10.0544 4.6735 49 1 0.5048 10.8090 3.3553 50 1 -0.5466 3.4801 1.1902 51 1 0.1171 3.6112 -0.4531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:43 Heat of formation + Delta-G solvation = 9.282024 kcal Electronic energy + Delta-G solvation = -29169.582354 eV Core-core repulsion = 25455.246176 eV Total energy + Delta-G solvation = -3714.336178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.66641 -38.48845 -37.71106 -36.50758 -34.69229 -34.47484 -32.09923 -30.90214 -29.85366 -28.26624 -27.63755 -25.94399 -23.87532 -23.07184 -22.65467 -22.60749 -21.96265 -20.87137 -19.85252 -19.38498 -17.54588 -17.20252 -16.23452 -16.13736 -15.91553 -15.54396 -14.81794 -14.60728 -14.38990 -14.24505 -14.00264 -13.85693 -13.67114 -13.43813 -13.08086 -12.69826 -12.65306 -12.47510 -12.34658 -12.04291 -11.98341 -11.77628 -11.73755 -11.35957 -11.09522 -10.96079 -10.83836 -10.73602 -10.63727 -10.51919 -10.42423 -10.28078 -9.99483 -9.89894 -9.82357 -9.72158 -9.53099 -9.09638 -8.38533 -7.74377 -7.27955 -6.00032 -4.04057 0.87114 1.92166 2.57921 3.28632 3.37301 3.41149 3.49353 3.63955 4.29261 4.40034 4.42733 4.50630 4.66704 4.71293 4.85790 4.93227 4.97969 5.01970 5.14172 5.24158 5.28741 5.29930 5.37145 5.39509 5.44857 5.59205 5.64028 5.69573 5.78974 5.84338 5.87335 5.91108 6.00654 6.05846 6.11991 6.13244 6.14220 6.24246 6.36898 6.46550 6.50481 6.65437 6.67686 6.80902 7.05778 7.14946 7.16868 7.47675 7.75142 7.88794 8.08084 8.25973 8.36412 8.71758 9.04183 9.61262 11.05224 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014365 B = 0.003141 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.730998 B = 8912.736586 C = 9503.016967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.679 5.679 14 C 0.094 3.906 15 H 0.087 0.913 16 C -0.102 4.102 17 C -0.091 4.091 18 C 0.168 3.832 19 C -0.175 4.175 20 C -0.008 4.008 21 C -0.254 4.254 22 C 0.517 3.483 23 O -0.562 6.562 24 N -0.495 5.495 25 C 0.118 3.882 26 C -0.172 4.172 27 C -0.171 4.171 28 C -0.167 4.167 29 C -0.090 4.090 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.259 0.741 36 H 0.318 0.682 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.132 0.868 42 H 0.145 0.855 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.099 0.901 50 H 0.069 0.931 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 12.078 10.223 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.308 5.308 14 C -0.017 4.017 15 H 0.106 0.894 16 C -0.141 4.141 17 C -0.129 4.129 18 C 0.062 3.938 19 C -0.180 4.180 20 C -0.030 4.030 21 C -0.276 4.276 22 C 0.319 3.681 23 O -0.446 6.446 24 N -0.206 5.206 25 C -0.004 4.004 26 C -0.191 4.191 27 C -0.209 4.209 28 C -0.204 4.204 29 C -0.130 4.130 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.163 0.837 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.125 0.875 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.111 0.889 49 H 0.117 0.883 50 H 0.087 0.913 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.865 12.758 10.312 17.421 hybrid contribution -0.043 -0.053 -0.897 0.900 sum -5.907 12.705 9.414 16.880 Atomic orbital electron populations 1.21881 0.99618 0.99738 0.99465 1.21772 0.91203 1.00460 1.03063 1.19175 0.95393 0.89900 0.84332 0.97876 1.21246 0.91312 1.36447 1.04155 0.92031 1.24953 0.97980 0.95677 0.95919 1.69877 1.34558 1.39517 1.09562 0.86532 0.85953 0.77622 0.77840 1.19799 1.21167 1.21286 1.60793 1.35451 1.01465 1.33118 1.21487 0.94676 0.90142 0.95426 0.89440 1.21546 1.03005 0.90958 0.98542 1.20843 0.95195 0.98434 0.98446 1.20300 0.95975 0.81725 0.95769 1.18997 0.99372 0.96828 1.02820 1.21594 0.93454 0.94996 0.92931 1.22012 1.05066 0.94116 1.06390 1.16990 0.81050 0.88876 0.81164 1.90914 1.71279 1.14258 1.68124 1.45511 1.30070 1.06659 1.38354 1.21516 0.93482 0.96590 0.88770 1.22572 1.04817 0.97052 0.94668 1.22976 0.96464 1.03728 0.97690 1.23027 0.98272 0.95763 1.03383 1.21105 1.00000 0.89224 1.02646 0.94614 0.93905 0.94461 0.88306 0.94084 0.93153 0.86441 0.92060 0.89730 0.89665 0.89030 0.84981 0.83716 0.88296 0.88532 0.87453 0.88436 0.88416 0.88873 0.88283 0.91304 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.63 37.16 0.36 -2.32 16 2 C -0.13 -2.79 5.37 -26.73 -0.14 -2.93 16 3 C 0.22 4.98 1.85 -68.86 -0.13 4.85 16 4 H 0.00 0.09 7.25 -51.93 -0.38 -0.29 16 5 C -0.49 -12.76 8.47 -34.44 -0.29 -13.05 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -24.52 11.29 55.43 0.63 -23.90 16 9 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 13 N -0.68 -12.61 6.06 -100.92 -0.61 -13.22 16 14 C 0.09 1.49 2.30 -67.68 -0.16 1.34 16 15 H 0.09 1.64 7.60 -51.93 -0.39 1.25 16 16 C -0.10 -1.29 5.62 -26.70 -0.15 -1.44 16 17 C -0.09 -0.99 4.36 -28.03 -0.12 -1.12 16 18 C 0.17 2.11 6.53 -81.66 -0.53 1.58 16 19 C -0.17 -2.32 5.72 -104.85 -0.60 -2.92 16 20 C -0.01 -0.10 9.64 -39.35 -0.38 -0.48 16 21 C -0.25 -3.43 10.00 -39.49 -0.40 -3.82 16 22 C 0.52 7.84 7.40 -15.62 -0.12 7.72 16 23 O -0.56 -9.98 16.61 4.86 0.08 -9.90 16 24 N -0.49 -6.35 2.60 -115.18 -0.30 -6.65 16 25 C 0.12 1.24 4.94 -4.04 -0.02 1.22 16 26 C -0.17 -1.64 5.33 -90.58 -0.48 -2.12 16 27 C -0.17 -1.28 10.25 -26.74 -0.27 -1.56 16 28 C -0.17 -1.54 10.18 -26.70 -0.27 -1.81 16 29 C -0.09 -1.27 4.97 -28.06 -0.14 -1.41 16 30 H 0.03 0.56 6.67 -51.93 -0.35 0.21 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 2.50 5.94 -51.93 -0.31 2.19 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.32 5.39 6.22 -39.29 -0.24 5.15 16 37 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.09 0.76 6.44 -51.93 -0.33 0.43 16 40 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 41 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.15 1.75 8.06 -52.48 -0.42 1.32 16 43 H 0.10 1.13 7.09 -51.93 -0.37 0.77 16 44 H 0.10 0.82 6.39 -51.93 -0.33 0.49 16 45 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.10 0.97 8.04 -51.93 -0.42 0.55 16 50 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 51 H 0.08 1.17 7.58 -51.93 -0.39 0.78 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -29.48 395.92 -11.74 -41.21 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -8.54 Total: 7.66 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -3.94 Total: -16.89 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.28 Total: -43.77 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.48 -11.74 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.496 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds