Wall clock time and date at job start Tue Mar 31 2020 17:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46963 * 2 1 4 4 H 1.08999 * 109.47372 * 303.87982 * 3 2 1 5 5 C 1.50703 * 109.46835 * 183.87693 * 3 2 1 6 6 H 1.08004 * 119.99944 * 240.00165 * 5 3 2 7 7 C 1.37880 * 119.99970 * 60.00499 * 5 3 2 8 8 N 1.31509 * 120.00072 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99745 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47726 * 59.99771 * 9 7 5 11 11 H 1.48503 * 109.47147 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47148 * 299.99812 * 9 7 5 13 13 N 1.46902 * 109.46810 * 63.87815 * 3 2 1 14 14 C 1.44771 * 110.99797 * 67.73586 * 13 3 2 15 15 C 1.54031 * 109.67826 * 217.85500 * 14 13 3 16 16 N 1.47771 * 111.55659 * 320.00476 * 15 14 13 17 17 C 1.34781 * 118.55144 * 138.13646 * 16 15 14 18 18 O 1.21515 * 119.98998 * 359.97438 * 17 16 15 19 19 O 1.34628 * 120.00640 * 179.97438 * 17 16 15 20 20 C 1.45194 * 117.00400 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.47020 * 59.99948 * 20 19 17 22 22 C 1.52995 * 109.47579 * 180.02562 * 20 19 17 23 23 C 1.53005 * 109.47154 * 300.00398 * 20 19 17 24 24 C 1.44679 * 122.90847 * 318.10975 * 16 15 14 25 25 C 1.54953 * 109.52150 * 89.07824 * 24 16 15 26 26 H 1.09001 * 109.42592 * 170.44443 * 25 24 16 27 27 F 1.39903 * 109.42761 * 50.60444 * 25 24 16 28 28 C 1.46269 * 110.99937 * 191.22331 * 13 3 2 29 29 H 1.09000 * 109.47209 * 59.99704 * 1 2 3 30 30 H 1.08998 * 109.46975 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46421 * 299.99267 * 1 2 3 32 32 H 1.09002 * 109.47043 * 240.00398 * 2 1 3 33 33 H 1.09000 * 109.47209 * 120.00296 * 2 1 3 34 34 H 0.96992 * 119.99957 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.43378 * 337.92395 * 14 13 3 36 36 H 1.08995 * 109.43463 * 97.79476 * 14 13 3 37 37 H 1.09006 * 109.06128 * 199.47150 * 15 14 13 38 38 H 1.08993 * 109.06051 * 80.54335 * 15 14 13 39 39 H 1.09001 * 109.47040 * 60.00081 * 21 20 19 40 40 H 1.09002 * 109.47516 * 180.02562 * 21 20 19 41 41 H 1.09000 * 109.47404 * 300.00682 * 21 20 19 42 42 H 1.08995 * 109.47523 * 59.99684 * 22 20 19 43 43 H 1.09002 * 109.47315 * 180.02562 * 22 20 19 44 44 H 1.09008 * 109.46949 * 300.00393 * 22 20 19 45 45 H 1.09000 * 109.46776 * 59.99620 * 23 20 19 46 46 H 1.09002 * 109.46922 * 179.97438 * 23 20 19 47 47 H 1.08995 * 109.46538 * 299.99452 * 23 20 19 48 48 H 1.09004 * 109.46008 * 329.06872 * 24 16 15 49 49 H 1.08998 * 109.45900 * 209.08892 * 24 16 15 50 50 H 1.08998 * 108.50076 * 269.82690 * 28 13 3 51 51 H 1.09003 * 108.49693 * 27.28736 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6210 1.9761 -0.8532 5 6 3.5440 1.4436 -0.0961 6 1 4.1349 1.8932 0.6882 7 6 4.1656 0.8706 -1.1853 8 7 3.4461 0.3227 -2.1400 9 14 6.0297 0.8725 -1.3046 10 1 6.6011 0.1462 -0.1423 11 1 6.4460 0.2009 -2.5620 12 1 6.5243 2.2729 -1.3049 13 7 1.6283 2.1074 1.2436 14 6 2.3099 1.5377 2.3867 15 6 1.3452 1.4707 3.5855 16 7 0.4978 2.6785 3.6687 17 6 -0.8081 2.5299 3.9671 18 8 -1.2646 1.4205 4.1605 19 8 -1.6067 3.6105 4.0509 20 6 -3.0022 3.3753 4.3756 21 6 -3.0996 2.6855 5.7379 22 6 -3.7465 4.7111 4.4255 23 6 -3.6313 2.4812 3.3052 24 6 1.0081 4.0136 3.4445 25 6 0.9015 4.3626 1.9386 26 1 1.1246 5.4198 1.7947 27 9 -0.3967 4.0968 1.4900 28 6 1.8626 3.5493 1.1695 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5137 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8834 -0.0801 -2.9064 35 1 2.6531 0.5329 2.1405 36 1 3.1668 2.1598 2.6450 37 1 1.9247 1.3784 4.5041 38 1 0.7062 0.5941 3.4796 39 1 -2.6514 3.3224 6.5005 40 1 -4.1472 2.5085 5.9815 41 1 -2.5694 1.7338 5.7020 42 1 -3.6771 5.2022 3.4549 43 1 -4.7940 4.5345 4.6697 44 1 -3.2984 5.3484 5.1879 45 1 -3.1011 1.5295 3.2693 46 1 -4.6788 2.3042 3.5492 47 1 -3.5619 2.9726 2.3348 48 1 2.0519 4.0604 3.7551 49 1 0.4241 4.7278 4.0250 50 1 2.8662 3.7561 1.5410 51 1 1.8151 3.8541 0.1240 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:13 Heat of formation + Delta-G solvation = -117.546995 kcal Electronic energy + Delta-G solvation = -32175.065548 eV Core-core repulsion = 28024.460426 eV Total energy + Delta-G solvation = -4150.605122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.00383 -40.54774 -38.53990 -36.87364 -35.31864 -33.79818 -32.86306 -31.88322 -30.99838 -28.12445 -27.39388 -27.26688 -26.36624 -25.40407 -23.19399 -22.75844 -20.75327 -20.57882 -19.17835 -18.76861 -17.60931 -16.79094 -16.38199 -16.21050 -15.81851 -15.43506 -15.04626 -14.77430 -14.69892 -14.22068 -13.95423 -13.78773 -13.53561 -13.25648 -12.97709 -12.80772 -12.50024 -12.34371 -12.20728 -12.14554 -11.83843 -11.82070 -11.70599 -11.62030 -11.34556 -11.23666 -11.16142 -11.03415 -10.91582 -10.79062 -10.59188 -10.40626 -10.37382 -10.16311 -10.03054 -9.67415 -9.62173 -9.45381 -9.10705 -8.42068 -8.33086 -7.26430 -6.04615 -4.19321 2.44552 3.22822 3.23478 3.29355 3.30622 4.03199 4.33419 4.69129 4.79286 4.82135 4.90977 4.91820 4.98125 5.18718 5.31439 5.40238 5.45522 5.48357 5.57586 5.59863 5.68090 5.72948 5.81203 5.84586 5.89902 5.95101 6.00779 6.07024 6.20615 6.32741 6.37094 6.40580 6.45762 6.51403 6.53123 6.59337 6.74103 6.76851 6.88402 7.13745 7.24563 7.34379 7.56505 7.67707 7.73470 7.93221 8.08058 8.24836 8.42481 8.70695 8.90550 9.49068 10.94740 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.003774 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.937321 B = 7418.374790 C = 7670.862008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C 0.219 3.781 4 H 0.038 0.962 5 C -0.549 4.549 6 H 0.055 0.945 7 C 0.071 3.929 8 N -0.882 5.882 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.518 5.518 14 C 0.052 3.948 15 C 0.133 3.867 16 N -0.568 5.568 17 C 0.657 3.343 18 O -0.574 6.574 19 O -0.358 6.358 20 C 0.137 3.863 21 C -0.182 4.182 22 C -0.138 4.138 23 C -0.181 4.181 24 C 0.095 3.905 25 C 0.084 3.916 26 H 0.083 0.917 27 F -0.200 7.200 28 C 0.033 3.967 29 H 0.036 0.964 30 H 0.024 0.976 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.034 0.966 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.046 0.954 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 8.245 12.998 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C 0.114 3.886 4 H 0.056 0.944 5 C -0.588 4.588 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.241 5.241 14 C -0.078 4.078 15 C 0.011 3.989 16 N -0.307 5.307 17 C 0.412 3.588 18 O -0.464 6.464 19 O -0.273 6.273 20 C 0.100 3.900 21 C -0.239 4.239 22 C -0.196 4.196 23 C -0.238 4.238 24 C -0.030 4.030 25 C 0.046 3.954 26 H 0.101 0.899 27 F -0.181 7.181 28 C -0.096 4.096 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.106 0.894 49 H 0.105 0.895 50 H 0.064 0.936 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.360 7.732 12.917 17.727 hybrid contribution 1.936 0.167 -0.407 1.986 sum -7.424 7.899 12.510 16.553 Atomic orbital electron populations 1.21680 0.98622 0.98352 1.00723 1.21596 0.92414 0.98831 1.01768 1.19410 0.92746 0.91232 0.85255 0.94400 1.21729 0.92473 1.38462 1.06147 0.92729 1.24913 0.97866 0.94905 0.95586 1.69864 1.35058 1.37505 1.09530 0.86733 0.86122 0.78142 0.77415 1.20308 1.21260 1.20442 1.61174 1.57187 1.00829 1.04891 1.22261 0.92974 1.02234 0.90315 1.22214 0.92873 0.86070 0.97706 1.46309 1.05690 1.07594 1.71058 1.17970 0.82137 0.82480 0.76213 1.90840 1.74162 1.25196 1.56224 1.86297 1.21672 1.35582 1.83743 1.21937 0.76830 0.96197 0.95052 1.22510 1.02864 1.03047 0.95461 1.21825 0.99298 0.95246 1.03199 1.22473 1.00868 1.02177 0.98284 1.22109 1.01007 0.84189 0.95730 1.21518 0.80075 0.99265 0.94573 0.89919 1.92827 1.39301 1.95706 1.90277 1.21366 0.96181 0.91093 1.00951 0.94486 0.95726 0.93120 0.88995 0.94943 0.92734 0.88716 0.94738 0.92466 0.88947 0.92595 0.91581 0.89345 0.91415 0.90581 0.91869 0.89258 0.91837 0.91966 0.89411 0.89516 0.93564 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.79 37.16 0.36 -2.57 16 2 C -0.11 -2.52 5.16 -26.73 -0.14 -2.65 16 3 C 0.22 5.16 1.60 -68.86 -0.11 5.05 16 4 H 0.04 1.02 7.71 -51.93 -0.40 0.62 16 5 C -0.55 -13.76 7.22 -34.44 -0.25 -14.01 16 6 H 0.05 1.35 6.86 -52.48 -0.36 0.99 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.08 11.30 55.43 0.63 -23.45 16 9 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.52 -10.25 3.46 -232.97 -0.81 -11.06 16 14 C 0.05 0.93 4.04 -4.43 -0.02 0.91 16 15 C 0.13 2.11 6.46 -2.81 -0.02 2.10 16 16 N -0.57 -8.93 2.44 -178.00 -0.43 -9.37 16 17 C 0.66 11.14 7.00 54.06 0.38 11.52 16 18 O -0.57 -10.80 11.16 -19.28 -0.22 -11.01 16 19 O -0.36 -5.45 8.09 -40.29 -0.33 -5.78 16 20 C 0.14 1.75 1.13 -90.62 -0.10 1.65 16 21 C -0.18 -2.14 8.37 37.16 0.31 -1.83 16 22 C -0.14 -1.34 8.85 37.16 0.33 -1.01 16 23 C -0.18 -2.45 8.37 37.16 0.31 -2.14 16 24 C 0.09 1.25 5.32 -3.98 -0.02 1.23 16 25 C 0.08 1.25 4.12 -28.34 -0.12 1.13 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 F -0.20 -3.66 15.77 2.25 0.04 -3.62 16 28 C 0.03 0.59 4.17 -6.80 -0.03 0.56 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 1.11 7.72 -51.93 -0.40 0.71 16 32 H 0.09 2.40 5.98 -51.93 -0.31 2.09 16 33 H 0.03 0.74 6.35 -51.93 -0.33 0.41 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.09 1.86 5.57 -51.93 -0.29 1.57 16 36 H 0.03 0.59 6.80 -51.93 -0.35 0.24 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.65 6.96 -51.93 -0.36 1.29 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 45 H 0.09 1.47 5.88 -51.93 -0.31 1.16 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 49 H 0.09 1.03 7.18 -51.93 -0.37 0.66 16 50 H 0.05 0.78 7.18 -51.93 -0.37 0.41 16 51 H 0.07 1.45 7.42 -51.93 -0.39 1.07 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -28.92 383.44 -8.32 -37.24 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.75 Total: 4.32 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 0.80 Total: 1.67 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.62 Total: -43.87 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.54 Total: -16.79 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.04 Total: -3.62 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.92 -8.32 -37.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.306 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds