Wall clock time and date at job start Tue Mar 31 2020 17:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46838 * 2 1 4 4 H 1.09005 * 109.46944 * 176.78759 * 3 2 1 5 5 C 1.50693 * 109.47581 * 296.79151 * 3 2 1 6 6 H 1.07996 * 120.00539 * 120.00131 * 5 3 2 7 7 C 1.37887 * 119.99803 * 300.00149 * 5 3 2 8 8 N 1.31510 * 119.99626 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 119.99794 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47468 * 60.00265 * 9 7 5 11 11 H 1.48507 * 109.46988 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47621 * 299.99808 * 9 7 5 13 13 N 1.46900 * 109.47202 * 56.79396 * 3 2 1 14 14 C 1.41451 * 110.99913 * 54.28685 * 13 3 2 15 15 C 1.54780 * 109.98083 * 191.68216 * 14 13 3 16 16 N 1.44878 * 109.68618 * 290.26253 * 15 14 13 17 17 C 1.34778 * 118.74617 * 269.69973 * 16 15 14 18 18 O 1.21517 * 119.99934 * 0.02562 * 17 16 15 19 19 O 1.34641 * 120.00165 * 179.97438 * 17 16 15 20 20 C 1.45197 * 117.00026 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.46981 * 60.00224 * 20 19 17 22 22 C 1.52997 * 109.47279 * 180.02562 * 20 19 17 23 23 C 1.52997 * 109.47448 * 300.00337 * 20 19 17 24 24 C 1.47614 * 122.50726 * 89.72631 * 16 15 14 25 25 C 1.53788 * 111.30310 * 318.31921 * 24 16 15 26 26 H 1.09000 * 109.44497 * 199.94640 * 25 24 16 27 27 F 1.39895 * 109.44906 * 80.00371 * 25 24 16 28 28 C 1.46197 * 111.00094 * 185.31992 * 13 3 2 29 29 H 1.09001 * 109.46985 * 65.11820 * 1 2 3 30 30 H 1.08992 * 109.47159 * 185.11933 * 1 2 3 31 31 H 1.09008 * 109.47196 * 305.12015 * 1 2 3 32 32 H 1.08993 * 109.46993 * 240.00207 * 2 1 3 33 33 H 1.09002 * 109.47088 * 120.00035 * 2 1 3 34 34 H 0.97009 * 119.99540 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.38574 * 311.84240 * 14 13 3 36 36 H 1.09003 * 109.38230 * 71.63672 * 14 13 3 37 37 H 1.08998 * 109.43199 * 50.33013 * 15 14 13 38 38 H 1.09003 * 109.43523 * 170.23508 * 15 14 13 39 39 H 1.09004 * 109.47148 * 60.00038 * 21 20 19 40 40 H 1.09000 * 109.46943 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.47552 * 299.99684 * 21 20 19 42 42 H 1.08998 * 109.46867 * 59.99889 * 22 20 19 43 43 H 1.08995 * 109.47313 * 180.02562 * 22 20 19 44 44 H 1.09002 * 109.47088 * 300.00685 * 22 20 19 45 45 H 1.09003 * 109.47192 * 59.99774 * 23 20 19 46 46 H 1.09000 * 109.47486 * 179.97438 * 23 20 19 47 47 H 1.08998 * 109.47335 * 300.00172 * 23 20 19 48 48 H 1.09009 * 109.10954 * 78.78787 * 24 16 15 49 49 H 1.09002 * 109.10999 * 197.84513 * 24 16 15 50 50 H 1.08997 * 109.53583 * 264.65554 * 28 13 3 51 51 H 1.09001 * 109.53335 * 24.88492 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1285 1.4431 0.0576 5 6 1.6036 2.1297 -1.2682 6 1 0.9788 3.0091 -1.2185 7 6 2.0022 1.6355 -2.4922 8 7 2.7626 0.5643 -2.5528 9 14 1.4608 2.4868 -4.0642 10 1 1.9552 3.8870 -4.0645 11 1 2.0183 1.7642 -5.2357 12 1 -0.0222 2.4855 -4.1425 13 7 1.4880 2.1570 1.1588 14 6 1.7685 1.4663 2.3609 15 6 0.9398 2.0670 3.5219 16 7 1.4347 3.3908 3.8409 17 6 2.4048 3.5140 4.7684 18 8 2.8478 2.5256 5.3192 19 8 2.8837 4.7321 5.0840 20 6 3.9281 4.7892 6.0911 21 6 5.1382 3.9818 5.6172 22 6 4.3417 6.2451 6.3150 23 6 3.4045 4.2008 7.4028 24 6 0.9167 4.6097 3.1891 25 6 0.7091 4.3917 1.6810 26 1 0.6753 5.3571 1.1761 27 9 -0.4961 3.7134 1.4700 28 6 1.8523 3.5725 1.1238 29 1 -0.3633 0.4324 -0.9323 30 1 -0.3633 -1.0235 0.0917 31 1 -0.3634 0.5912 0.8406 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.0427 0.2164 -3.4140 35 1 1.5133 0.4134 2.2411 36 1 2.8301 1.5574 2.5912 37 1 -0.1067 2.1331 3.2242 38 1 1.0274 1.4265 4.3995 39 1 5.5113 4.4010 4.6827 40 1 5.9224 4.0251 6.3731 41 1 4.8434 2.9446 5.4581 42 1 3.4793 6.8199 6.6528 43 1 5.1259 6.2879 7.0707 44 1 4.7145 6.6647 5.3807 45 1 3.1095 3.1636 7.2436 46 1 4.1886 4.2433 8.1587 47 1 2.5423 4.7759 7.7405 48 1 -0.0355 4.8810 3.6450 49 1 1.6269 5.4232 3.3378 50 1 2.7449 3.7342 1.7280 51 1 2.0482 3.8730 0.0945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:16 Heat of formation + Delta-G solvation = -108.268508 kcal Electronic energy + Delta-G solvation = -31752.466728 eV Core-core repulsion = 27602.263952 eV Total energy + Delta-G solvation = -4150.202777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.95315 -40.84532 -38.64620 -37.02313 -35.49736 -34.02887 -32.83143 -31.99028 -30.73536 -28.12366 -27.55293 -27.47090 -25.96773 -25.87202 -23.18543 -22.97220 -21.01416 -20.51161 -19.24295 -18.88764 -17.72337 -16.81029 -16.34257 -16.21594 -15.75710 -15.50713 -15.30794 -14.93686 -14.59239 -14.39268 -14.05880 -13.94955 -13.57273 -13.30938 -13.19298 -12.75422 -12.69467 -12.59683 -12.25073 -12.13210 -12.00630 -11.92292 -11.89883 -11.53348 -11.40932 -11.39108 -11.27808 -11.05277 -10.87720 -10.80275 -10.54233 -10.43418 -10.39843 -10.06868 -9.93600 -9.81420 -9.69798 -9.32780 -8.80522 -8.55445 -8.39286 -7.03643 -6.00186 -4.03983 2.23823 2.93101 3.31249 3.36653 3.39379 3.79160 4.40318 4.59682 4.63665 4.68218 4.77660 4.79475 5.09968 5.17155 5.27208 5.31013 5.31373 5.34861 5.40297 5.53750 5.58812 5.62024 5.72479 5.74915 5.78461 5.83674 5.84088 6.04470 6.17365 6.22237 6.30737 6.32317 6.40737 6.48258 6.50948 6.61080 6.64613 6.75570 6.82376 7.16832 7.36140 7.43087 7.43545 7.69762 7.82636 7.87266 8.22219 8.36162 8.44107 8.71953 9.00872 9.59894 11.05755 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.003579 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.095246 B = 7822.123764 C = 7917.275526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C 0.227 3.773 4 H -0.004 1.004 5 C -0.498 4.498 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.546 5.546 14 C 0.061 3.939 15 C 0.126 3.874 16 N -0.581 5.581 17 C 0.646 3.354 18 O -0.568 6.568 19 O -0.365 6.365 20 C 0.136 3.864 21 C -0.184 4.184 22 C -0.140 4.140 23 C -0.182 4.182 24 C 0.087 3.913 25 C 0.088 3.912 26 H 0.088 0.912 27 F -0.192 7.192 28 C 0.048 3.952 29 H 0.053 0.947 30 H 0.014 0.986 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.014 0.986 34 H 0.260 0.740 35 H 0.091 0.909 36 H 0.013 0.987 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.097 0.903 50 H 0.032 0.968 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 9.680 15.969 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.122 3.878 4 H 0.013 0.987 5 C -0.536 4.536 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.270 5.270 14 C -0.069 4.069 15 C 0.004 3.996 16 N -0.320 5.320 17 C 0.401 3.599 18 O -0.458 6.458 19 O -0.280 6.280 20 C 0.099 3.901 21 C -0.241 4.241 22 C -0.197 4.197 23 C -0.239 4.239 24 C -0.035 4.035 25 C 0.050 3.950 26 H 0.106 0.894 27 F -0.173 7.173 28 C -0.081 4.081 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.031 0.969 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.116 0.884 50 H 0.050 0.950 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.020 9.256 16.005 18.489 hybrid contribution 0.590 0.417 -0.808 1.084 sum 0.569 9.672 15.197 18.023 Atomic orbital electron populations 1.21469 0.97097 0.97235 1.02048 1.21637 0.95252 0.98190 1.00170 1.19177 0.91958 0.90538 0.86105 0.98679 1.21047 1.30837 1.12033 0.89695 0.91905 1.24896 0.95173 0.95066 0.98916 1.69869 1.35833 1.22296 1.25068 0.86648 0.79041 0.79439 0.82785 1.20464 1.21488 1.20214 1.58081 1.64924 1.00630 1.03408 1.21685 0.96305 0.99229 0.89706 1.21884 0.99107 0.80421 0.98197 1.46772 1.37631 1.08619 1.39006 1.18134 0.79804 0.81863 0.80080 1.90875 1.61053 1.38114 1.55741 1.86282 1.53361 1.30819 1.57575 1.22012 0.85316 0.96729 0.86073 1.22510 0.96797 1.03126 1.01635 1.21846 1.01869 0.93234 1.02739 1.22501 1.01544 1.04019 0.95832 1.22654 1.00725 0.86712 0.93455 1.21831 0.83402 0.95891 0.93863 0.89385 1.92833 1.46239 1.82417 1.95786 1.22018 0.93586 0.89696 1.02826 0.92755 0.96717 0.93219 0.88884 0.96720 0.92966 0.89079 0.96907 0.88842 0.89848 0.92163 0.91381 0.89275 0.91598 0.90332 0.91467 0.89335 0.91375 0.92363 0.90876 0.88427 0.95011 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.34 37.16 0.35 -2.28 16 2 C -0.11 -2.68 4.95 -26.73 -0.13 -2.81 16 3 C 0.23 5.47 1.84 -68.87 -0.13 5.34 16 4 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 5 C -0.50 -12.84 6.42 -34.44 -0.22 -13.06 16 6 H 0.06 1.63 6.77 -52.49 -0.36 1.27 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -24.74 11.30 55.43 0.63 -24.12 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.55 -11.05 2.23 -232.86 -0.52 -11.57 16 14 C 0.06 1.14 4.82 -5.73 -0.03 1.11 16 15 C 0.13 2.00 5.42 -3.97 -0.02 1.98 16 16 N -0.58 -8.72 2.18 -178.24 -0.39 -9.11 16 17 C 0.65 10.05 7.65 54.06 0.41 10.47 16 18 O -0.57 -9.85 11.31 -19.28 -0.22 -10.06 16 19 O -0.37 -4.95 8.41 -40.33 -0.34 -5.29 16 20 C 0.14 1.52 1.13 -90.62 -0.10 1.42 16 21 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 22 C -0.14 -1.15 8.85 37.16 0.33 -0.82 16 23 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 24 C 0.09 1.13 5.90 -3.02 -0.02 1.11 16 25 C 0.09 1.32 4.09 -27.19 -0.11 1.21 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 27 F -0.19 -3.42 15.10 2.25 0.03 -3.38 16 28 C 0.05 0.88 4.84 -5.07 -0.02 0.85 16 29 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 1.04 6.98 -51.92 -0.36 0.67 16 32 H 0.09 2.45 5.99 -51.93 -0.31 2.14 16 33 H 0.01 0.32 6.29 -51.93 -0.33 -0.01 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.09 1.73 5.30 -51.93 -0.28 1.45 16 36 H 0.01 0.27 8.11 -51.93 -0.42 -0.16 16 37 H 0.09 1.48 7.13 -51.93 -0.37 1.11 16 38 H 0.08 1.29 7.28 -51.93 -0.38 0.91 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.17 5.88 -51.93 -0.31 0.86 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 49 H 0.10 1.13 6.91 -51.93 -0.36 0.77 16 50 H 0.03 0.58 7.32 -51.93 -0.38 0.20 16 51 H 0.10 2.11 5.80 -51.93 -0.30 1.81 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -28.88 379.72 -7.90 -36.78 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.63 Total: 2.65 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 0.83 Total: 2.59 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.28 Total: -44.80 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.56 Total: -15.35 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.03 Total: -3.38 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.88 -7.90 -36.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.493 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds