Wall clock time and date at job start Tue Mar 31 2020 17:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 H 1.08997 * 109.47373 * 303.86968 * 3 2 1 5 5 C 1.50705 * 109.46835 * 183.86938 * 3 2 1 6 6 H 1.08002 * 120.00020 * 239.99684 * 5 3 2 7 7 C 1.37874 * 119.99738 * 60.00487 * 5 3 2 8 8 N 1.31518 * 120.00037 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00090 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47103 * 89.99619 * 9 7 5 11 11 H 1.48500 * 109.47175 * 209.99968 * 9 7 5 12 12 H 1.48505 * 109.46800 * 329.99684 * 9 7 5 13 13 N 1.46900 * 109.47159 * 63.87352 * 3 2 1 14 14 C 1.44764 * 111.00055 * 67.73438 * 13 3 2 15 15 C 1.54404 * 109.83023 * 217.76140 * 14 13 3 16 16 N 1.47777 * 111.34501 * 320.28569 * 15 14 13 17 17 C 1.34780 * 118.54912 * 137.99000 * 16 15 14 18 18 O 1.21509 * 120.00110 * 359.73773 * 17 16 15 19 19 O 1.34637 * 119.99706 * 179.73456 * 17 16 15 20 20 C 1.45201 * 116.99803 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47031 * 59.99836 * 20 19 17 22 22 C 1.53002 * 109.47216 * 300.00249 * 20 19 17 23 23 C 1.52997 * 109.47585 * 180.02562 * 20 19 17 24 24 C 1.44681 * 122.90376 * 317.71602 * 16 15 14 25 25 C 1.54950 * 109.52230 * 89.35843 * 24 16 15 26 26 H 1.08999 * 109.42769 * 50.59900 * 25 24 16 27 27 F 1.39894 * 109.42825 * 170.44101 * 25 24 16 28 28 C 1.46267 * 111.00037 * 191.22665 * 13 3 2 29 29 H 1.09001 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47140 * 299.99733 * 1 2 3 31 31 H 1.09002 * 109.47273 * 59.99926 * 1 2 3 32 32 H 1.08998 * 109.47126 * 239.99784 * 2 1 3 33 33 H 1.09001 * 109.47109 * 119.99551 * 2 1 3 34 34 H 0.97001 * 119.99978 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.43681 * 337.91869 * 14 13 3 36 36 H 1.08999 * 109.43981 * 97.83648 * 14 13 3 37 37 H 1.08998 * 109.26540 * 199.75170 * 15 14 13 38 38 H 1.09006 * 109.07674 * 80.69218 * 15 14 13 39 39 H 1.08995 * 109.47673 * 299.99900 * 21 20 19 40 40 H 1.09006 * 109.46726 * 60.00531 * 21 20 19 41 41 H 1.09003 * 109.47088 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47485 * 179.97438 * 22 20 19 43 43 H 1.09004 * 109.47081 * 299.99768 * 22 20 19 44 44 H 1.09003 * 109.47129 * 59.99425 * 22 20 19 45 45 H 1.09000 * 109.46748 * 300.00169 * 23 20 19 46 46 H 1.09003 * 109.47035 * 59.99426 * 23 20 19 47 47 H 1.08995 * 109.47688 * 180.02562 * 23 20 19 48 48 H 1.08998 * 109.46224 * 209.36990 * 24 16 15 49 49 H 1.08999 * 109.46172 * 329.33830 * 24 16 15 50 50 H 1.09002 * 108.49827 * 27.29053 * 28 13 3 51 51 H 1.09003 * 108.38058 * 269.73446 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6211 1.9760 -0.8532 5 6 3.5439 1.4436 -0.0959 6 1 4.1347 1.8933 0.6884 7 6 4.1656 0.8705 -1.1849 8 7 3.4462 0.3225 -2.1398 9 14 6.0299 0.8724 -1.3042 10 1 6.5681 -0.3549 -0.6645 11 1 6.4345 0.9042 -2.7327 12 1 6.5690 2.0696 -0.6103 13 7 1.6281 2.1075 1.2435 14 6 2.3096 1.5379 2.3866 15 6 1.3461 1.4714 3.5913 16 7 0.4974 2.6788 3.6685 17 6 -0.8086 2.5301 3.9663 18 8 -1.2653 1.4208 4.1597 19 8 -1.6073 3.6108 4.0495 20 6 -3.0027 3.3757 4.3747 21 6 -3.0998 2.6869 5.7374 22 6 -3.6319 2.4808 3.3050 23 6 -3.7472 4.7115 4.4237 24 6 1.0078 4.0139 3.4442 25 6 0.9013 4.3628 1.9383 26 1 -0.1102 4.1556 1.5888 27 9 1.1876 5.7196 1.7536 28 6 1.8624 3.5493 1.1693 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8835 -0.0803 -2.9062 35 1 2.6527 0.5329 2.1407 36 1 3.1661 2.1604 2.6456 37 1 1.9251 1.3839 4.5106 38 1 0.7078 0.5937 3.4890 39 1 -2.5697 1.7352 5.7020 40 1 -2.6515 3.3245 6.4995 41 1 -4.1474 2.5108 5.9817 42 1 -4.6794 2.3039 3.5493 43 1 -3.5628 2.9715 2.3341 44 1 -3.1017 1.5291 3.2696 45 1 -3.2990 5.3493 5.1856 46 1 -3.6779 5.2019 3.4527 47 1 -4.7946 4.5350 4.6683 48 1 0.4239 4.7282 4.0247 49 1 2.0516 4.0606 3.7550 50 1 1.8148 3.8541 0.1238 51 1 2.8657 3.7542 1.5428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:20 Heat of formation + Delta-G solvation = -120.838352 kcal Electronic energy + Delta-G solvation = -31757.594669 eV Core-core repulsion = 27606.846823 eV Total energy + Delta-G solvation = -4150.747846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.211 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.41890 -40.74854 -38.70632 -36.99255 -35.46719 -33.91726 -32.90495 -31.82660 -31.04450 -28.09642 -27.47749 -27.38062 -26.40401 -25.41457 -23.29256 -22.81605 -20.89859 -20.75585 -19.30136 -18.88029 -17.71460 -16.98737 -16.39992 -16.28169 -16.04646 -15.52523 -15.16398 -14.86274 -14.72304 -14.32332 -14.01284 -13.90444 -13.60297 -13.41215 -13.08463 -12.86011 -12.59875 -12.47815 -12.38116 -12.29111 -12.08264 -11.93089 -11.84173 -11.62315 -11.43576 -11.29449 -11.25472 -11.17329 -10.97482 -10.91096 -10.66757 -10.44365 -10.32379 -10.20165 -10.05231 -9.79868 -9.69862 -9.54235 -9.17296 -8.48980 -8.43964 -7.37983 -6.07996 -4.21959 2.30262 3.04334 3.21618 3.29834 3.31680 3.88257 4.32310 4.60454 4.68712 4.71518 4.77532 4.87167 4.93240 5.16625 5.34064 5.36486 5.38530 5.45771 5.48413 5.56038 5.61210 5.64087 5.71547 5.77594 5.83891 5.91590 5.93532 6.03632 6.15339 6.22182 6.27316 6.32788 6.39195 6.45147 6.46111 6.58440 6.62695 6.67443 6.76355 7.05868 7.14557 7.26712 7.50859 7.53883 7.68545 7.86004 8.02907 8.17403 8.35856 8.54574 8.86869 9.46758 10.91938 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.003802 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.262736 B = 7362.451591 C = 7907.901077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.219 3.781 4 H 0.039 0.961 5 C -0.549 4.549 6 H 0.056 0.944 7 C 0.071 3.929 8 N -0.882 5.882 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.522 5.522 14 C 0.052 3.948 15 C 0.131 3.869 16 N -0.568 5.568 17 C 0.651 3.349 18 O -0.568 6.568 19 O -0.364 6.364 20 C 0.136 3.864 21 C -0.182 4.182 22 C -0.183 4.183 23 C -0.140 4.140 24 C 0.100 3.900 25 C 0.082 3.918 26 H 0.085 0.915 27 F -0.212 7.212 28 C 0.037 3.963 29 H 0.025 0.975 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.093 0.907 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.097 0.903 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.075 0.925 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.266 6.326 12.811 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.113 3.887 4 H 0.057 0.943 5 C -0.588 4.588 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.520 5.520 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.245 5.245 14 C -0.078 4.078 15 C 0.010 3.990 16 N -0.306 5.306 17 C 0.406 3.594 18 O -0.458 6.458 19 O -0.279 6.279 20 C 0.099 3.901 21 C -0.239 4.239 22 C -0.240 4.240 23 C -0.197 4.197 24 C -0.025 4.025 25 C 0.043 3.957 26 H 0.103 0.897 27 F -0.193 7.193 28 C -0.093 4.093 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.094 0.906 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.932 5.855 12.739 17.778 hybrid contribution 1.968 0.235 -0.393 2.020 sum -8.964 6.090 12.346 16.427 Atomic orbital electron populations 1.21694 0.98698 0.98544 1.00532 1.21610 0.92342 0.98771 1.01975 1.19437 0.93045 0.91194 0.84985 0.94294 1.21746 0.92376 1.38396 1.06268 0.92592 1.24907 0.97974 0.94846 0.95522 1.69872 1.35009 1.37574 1.09556 0.86661 0.86025 0.78394 0.77312 1.20630 1.21189 1.20058 1.61047 1.57523 1.00696 1.05208 1.22324 0.93110 1.02342 0.90041 1.22349 0.92868 0.85834 0.97941 1.46343 1.05555 1.07793 1.70925 1.18069 0.82196 0.82561 0.76618 1.90858 1.74083 1.25068 1.55794 1.86311 1.22024 1.35737 1.83852 1.21995 0.76475 0.96356 0.95282 1.22505 1.02994 1.03051 0.95340 1.22503 1.01238 1.02143 0.98108 1.21844 0.99415 0.95142 1.03302 1.21976 1.01187 0.83890 0.95440 1.21283 1.01563 0.76192 0.96647 0.89688 1.92780 1.95543 1.34572 1.96396 1.21246 0.96480 0.90674 1.00884 0.95555 0.93287 0.94440 0.88842 0.94801 0.92762 0.88515 0.94494 0.92158 0.88751 0.89301 0.92455 0.91455 0.91540 0.92100 0.89149 0.91679 0.91434 0.90413 0.89295 0.89786 0.90613 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.79 37.16 0.36 -2.41 16 2 C -0.11 -2.45 5.16 -26.73 -0.14 -2.58 16 3 C 0.22 5.03 1.60 -68.86 -0.11 4.92 16 4 H 0.04 1.02 7.71 -51.93 -0.40 0.62 16 5 C -0.55 -13.71 7.22 -34.44 -0.25 -13.95 16 6 H 0.06 1.39 6.87 -52.49 -0.36 1.03 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -23.84 11.30 55.43 0.63 -23.21 16 9 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.52 -10.03 3.52 -232.72 -0.82 -10.85 16 14 C 0.05 0.90 4.04 -4.23 -0.02 0.88 16 15 C 0.13 1.99 6.49 -2.61 -0.02 1.97 16 16 N -0.57 -8.51 2.53 -177.77 -0.45 -8.96 16 17 C 0.65 10.26 7.64 54.06 0.41 10.67 16 18 O -0.57 -9.91 11.16 -19.28 -0.22 -10.13 16 19 O -0.36 -5.13 8.53 -40.32 -0.34 -5.48 16 20 C 0.14 1.59 1.13 -90.62 -0.10 1.48 16 21 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 22 C -0.18 -2.21 8.37 37.16 0.31 -1.90 16 23 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 24 C 0.10 1.38 5.20 -3.98 -0.02 1.36 16 25 C 0.08 1.28 4.01 -28.33 -0.11 1.17 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 27 F -0.21 -3.40 17.05 2.25 0.04 -3.36 16 28 C 0.04 0.67 4.16 -6.80 -0.03 0.64 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.99 7.72 -51.93 -0.40 0.59 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 2.38 5.98 -51.93 -0.31 2.07 16 33 H 0.03 0.74 6.35 -51.93 -0.33 0.41 16 34 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 35 H 0.10 1.84 5.57 -51.93 -0.29 1.55 16 36 H 0.04 0.64 6.80 -51.93 -0.35 0.28 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.57 6.96 -51.93 -0.36 1.21 16 39 H 0.09 1.19 5.88 -51.93 -0.31 0.88 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 1.13 7.18 -51.93 -0.37 0.75 16 49 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 50 H 0.08 1.52 7.42 -51.93 -0.39 1.13 16 51 H 0.04 0.79 7.17 -51.93 -0.37 0.41 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -27.11 385.73 -8.28 -35.40 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.75 Total: 4.07 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 0.84 Total: 1.40 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.64 Total: -43.02 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.56 Total: -15.61 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -27.11 -8.28 -35.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.439 kcal (2) G-P(sol) polarization free energy of solvation -27.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds