Wall clock time and date at job start Tue Mar 31 2020 18:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47228 * 2 1 4 4 C 1.52999 * 109.47463 * 239.99557 * 2 1 3 5 5 C 1.52995 * 109.47292 * 300.00704 * 4 2 1 6 6 C 1.53002 * 109.46698 * 299.99554 * 5 4 2 7 7 C 1.52999 * 109.47532 * 60.00164 * 6 5 4 8 8 H 1.09003 * 109.46918 * 59.99333 * 7 6 5 9 9 C 1.52994 * 109.47332 * 180.02562 * 7 6 5 10 10 C 1.50697 * 109.47161 * 294.99659 * 9 7 6 11 11 O 1.21278 * 120.00231 * 0.02562 * 10 9 7 12 12 N 1.34779 * 120.00121 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99820 * 0.02562 * 12 10 9 14 14 C 1.50706 * 109.46980 * 269.99231 * 13 12 10 15 15 H 1.07992 * 119.99938 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99923 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99932 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00106 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47636 * 89.99908 * 18 16 14 20 20 H 1.48505 * 109.46957 * 209.99721 * 18 16 14 21 21 H 1.48502 * 109.47060 * 329.99417 * 18 16 14 22 22 C 1.46504 * 120.00145 * 179.97438 * 12 10 9 23 23 C 1.50697 * 109.47359 * 270.00856 * 22 12 10 24 24 C 1.38215 * 119.62061 * 94.97583 * 23 22 12 25 25 C 1.38628 * 119.16579 * 180.02562 * 24 23 22 26 26 C 1.38677 * 118.41857 * 0.02562 * 25 24 23 27 27 C 1.38184 * 119.16194 * 0.02562 * 26 25 24 28 28 N 1.31854 * 119.61606 * 275.00108 * 23 22 12 29 29 C 1.53002 * 109.46952 * 119.99742 * 2 1 3 30 30 H 1.08999 * 109.47098 * 300.00137 * 1 2 3 31 31 H 1.08994 * 109.46772 * 60.00076 * 1 2 3 32 32 H 1.09000 * 109.46719 * 179.97438 * 1 2 3 33 33 H 1.09010 * 109.46482 * 60.00355 * 4 2 1 34 34 H 1.08994 * 109.47390 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47627 * 59.99258 * 5 4 2 36 36 H 1.08999 * 109.47225 * 179.97438 * 5 4 2 37 37 H 1.09003 * 109.47092 * 299.99646 * 6 5 4 38 38 H 1.09000 * 109.47196 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47212 * 175.00186 * 9 7 6 40 40 H 1.09003 * 109.47307 * 54.99808 * 9 7 6 41 41 H 1.08998 * 109.47483 * 29.99075 * 13 12 10 42 42 H 1.09004 * 109.47457 * 149.99274 * 13 12 10 43 43 H 0.97000 * 120.00471 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.46591 * 150.00560 * 22 12 10 45 45 H 1.09003 * 109.46570 * 30.00838 * 22 12 10 46 46 H 1.08004 * 120.42025 * 359.97438 * 24 23 22 47 47 H 1.08003 * 120.79539 * 179.97438 * 25 24 23 48 48 H 1.07996 * 120.42283 * 179.97438 * 26 25 24 49 49 H 1.07999 * 119.61911 * 180.02562 * 27 26 25 50 50 H 1.08999 * 109.47318 * 299.99986 * 29 2 1 51 51 H 1.09004 * 109.46860 * 180.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5300 -2.1637 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2494 8 1 0.4400 -2.1637 1.2493 9 6 2.0405 -2.8846 2.4986 10 6 1.4401 -4.2653 2.5624 11 8 0.6792 -4.6365 1.6940 12 7 1.7495 -5.0881 3.5841 13 6 2.6690 -4.6400 4.6327 14 6 4.0818 -4.9976 4.2485 15 1 4.2752 -5.5072 3.3162 16 6 5.1273 -4.6731 5.0867 17 7 6.3600 -4.9856 4.7516 18 14 4.7927 -3.7910 6.6990 19 1 4.5683 -4.7912 7.7733 20 1 5.9591 -2.9413 7.0496 21 1 3.5849 -2.9389 6.5556 22 6 1.1653 -6.4302 3.6465 23 6 -0.1316 -6.3785 4.4120 24 6 -1.3247 -6.2470 3.7267 25 6 -2.5122 -6.1999 4.4404 26 6 -2.4549 -6.2867 5.8233 27 6 -1.2248 -6.4158 6.4395 28 7 -0.1152 -6.4588 5.7280 29 6 2.0400 -0.7212 1.2493 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6768 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 0.4401 -2.1638 -1.2492 36 1 1.8931 -2.6775 -2.1393 37 1 3.1300 -2.8850 0.0001 38 1 1.6770 -3.9127 -0.0001 39 1 1.7521 -2.3216 3.3863 40 1 3.1269 -2.9624 2.4547 41 1 2.5870 -3.5595 4.7506 42 1 2.4136 -5.1285 5.5731 43 1 7.0956 -4.7577 5.3414 44 1 1.8579 -7.1048 4.1499 45 1 0.9764 -6.7915 2.6355 46 1 -1.3317 -6.1809 2.6487 47 1 -3.4594 -6.0971 3.9317 48 1 -3.3601 -6.2530 6.4113 49 1 -1.1717 -6.4845 7.5160 50 1 1.6767 -0.2074 2.1393 51 1 3.1300 -0.7208 1.2495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330569655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:52 Heat of formation + Delta-G solvation = -28.566521 kcal Electronic energy + Delta-G solvation = -29373.168441 eV Core-core repulsion = 25657.191027 eV Total energy + Delta-G solvation = -3715.977414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.19958 -39.56864 -38.30117 -35.21607 -33.08407 -32.54412 -32.25419 -31.55557 -31.20899 -28.20493 -27.51597 -26.64118 -25.47836 -23.36900 -22.45557 -22.14029 -22.04192 -20.89645 -18.48919 -18.23154 -17.11766 -16.62903 -16.46544 -15.79199 -15.60001 -15.35386 -15.17626 -14.84804 -14.33834 -14.25064 -13.83491 -13.68431 -13.53092 -13.20926 -13.03995 -12.79441 -12.59852 -12.44401 -12.26561 -11.94158 -11.84060 -11.62474 -11.47941 -11.42386 -11.20696 -11.18177 -10.91153 -10.83089 -10.62258 -10.58944 -10.25768 -9.96965 -9.80416 -9.76381 -9.72410 -9.60775 -9.27425 -9.08884 -8.75812 -8.64592 -7.78250 -6.17650 -4.18539 1.22384 1.43124 3.22839 3.29756 3.31866 3.34047 3.68621 4.19794 4.31479 4.52299 4.85395 4.86329 4.89920 4.90769 4.96620 5.13773 5.18160 5.26900 5.31165 5.34435 5.46160 5.53127 5.55957 5.67540 5.71106 5.72507 5.80319 5.86222 5.89226 5.94901 5.97217 6.00706 6.12696 6.15663 6.19397 6.23856 6.27348 6.28971 6.33706 6.43575 6.45380 6.48090 6.55981 6.58469 6.77576 6.84469 6.86042 6.87824 7.31875 7.49760 8.12120 8.23186 8.44066 8.85132 8.94005 9.42409 10.94940 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007714 B = 0.004972 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3628.901820 B = 5630.380748 C = 8177.820497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 H 0.063 0.937 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.067 4.067 8 H 0.074 0.926 9 C -0.135 4.135 10 C 0.522 3.478 11 O -0.567 6.567 12 N -0.583 5.583 13 C 0.209 3.791 14 C -0.538 4.538 15 H 0.078 0.922 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.870 3.130 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.265 1.265 22 C 0.167 3.833 23 C 0.121 3.879 24 C -0.150 4.150 25 C -0.083 4.083 26 C -0.181 4.181 27 C 0.093 3.907 28 N -0.469 5.469 29 C -0.112 4.112 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.032 0.968 42 H 0.038 0.962 43 H 0.266 0.734 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.139 0.861 47 H 0.130 0.870 48 H 0.129 0.871 49 H 0.152 0.848 50 H 0.058 0.942 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.747 4.955 -4.464 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 H 0.082 0.918 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.086 4.086 8 H 0.092 0.908 9 C -0.174 4.174 10 C 0.312 3.688 11 O -0.448 6.448 12 N -0.313 5.313 13 C 0.088 3.912 14 C -0.576 4.576 15 H 0.096 0.904 16 C -0.126 4.126 17 N -0.530 5.530 18 Si 0.697 3.303 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.190 1.190 22 C 0.042 3.958 23 C -0.018 4.018 24 C -0.171 4.171 25 C -0.109 4.109 26 C -0.202 4.202 27 C -0.064 4.064 28 N -0.178 5.178 29 C -0.149 4.149 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.110 0.890 46 H 0.157 0.843 47 H 0.147 0.853 48 H 0.147 0.853 49 H 0.169 0.831 50 H 0.077 0.923 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.101 4.685 -4.408 15.499 hybrid contribution -0.754 0.580 0.781 1.231 sum -14.855 5.265 -3.627 16.172 Atomic orbital electron populations 1.21945 0.95649 1.02348 1.00853 1.21057 0.95722 0.98641 0.95315 0.91808 1.21575 1.00512 0.96128 0.96966 1.21529 1.00711 0.95068 0.98104 1.21685 1.00142 1.00702 0.93058 1.20897 1.00547 0.93326 0.93794 0.90797 1.21733 1.03645 0.93039 0.99025 1.20576 0.80389 0.87291 0.80566 1.90529 1.37990 1.77202 1.39071 1.47896 1.44763 1.13358 1.25276 1.19860 0.89073 0.95470 0.86845 1.21359 0.88752 1.39625 1.07859 0.90361 1.24835 0.94885 0.95148 0.97699 1.69889 0.98873 1.46630 1.37570 0.86936 0.78236 0.80442 0.84673 1.19811 1.21023 1.19000 1.20152 0.89955 0.86339 0.99330 1.21915 0.95956 0.94033 0.89937 1.22139 0.92749 1.00152 1.02034 1.21561 0.98539 0.96583 0.94204 1.22087 0.99430 1.03121 0.95519 1.22753 0.87827 0.95665 1.00166 1.67583 1.31300 1.11258 1.07702 1.21643 1.00899 0.95398 0.97001 0.93128 0.93339 0.91671 0.92734 0.92126 0.92046 0.92698 0.92589 0.89883 0.89913 0.87541 0.95061 0.94409 0.92437 0.88457 0.89029 0.84296 0.85251 0.85293 0.83096 0.92288 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.50 37.16 0.32 -1.31 16 2 C -0.09 -1.01 3.19 -90.62 -0.29 -1.30 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.11 -1.30 5.45 -26.73 -0.15 -1.45 16 5 C -0.12 -1.48 5.65 -26.73 -0.15 -1.63 16 6 C -0.12 -1.80 4.94 -26.73 -0.13 -1.93 16 7 C -0.07 -1.00 1.56 -90.62 -0.14 -1.14 16 8 H 0.07 1.15 6.24 -51.93 -0.32 0.82 16 9 C -0.13 -2.36 3.73 -27.89 -0.10 -2.46 16 10 C 0.52 10.18 7.39 -10.99 -0.08 10.10 16 11 O -0.57 -11.27 13.50 5.56 0.08 -11.20 16 12 N -0.58 -11.88 2.44 -176.43 -0.43 -12.31 16 13 C 0.21 4.71 4.03 -5.19 -0.02 4.69 16 14 C -0.54 -14.16 9.83 -34.44 -0.34 -14.50 16 15 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 16 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 18 Si 0.87 20.33 27.47 -169.99 -4.67 15.66 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 22 C 0.17 3.08 5.71 -5.19 -0.03 3.05 16 23 C 0.12 2.06 6.36 -82.59 -0.53 1.54 16 24 C -0.15 -2.24 9.72 -39.45 -0.38 -2.63 16 25 C -0.08 -1.02 10.18 -39.28 -0.40 -1.42 16 26 C -0.18 -2.13 10.11 -39.44 -0.40 -2.53 16 27 C 0.09 1.29 11.18 -17.55 -0.20 1.09 16 28 N -0.47 -8.13 10.27 -9.48 -0.10 -8.23 16 29 C -0.11 -1.45 4.73 -26.73 -0.13 -1.58 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.77 4.81 -51.93 -0.25 0.52 16 33 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.45 5.95 -51.93 -0.31 1.14 16 39 H 0.08 1.39 7.40 -51.93 -0.38 1.00 16 40 H 0.11 2.04 8.00 -51.93 -0.42 1.63 16 41 H 0.03 0.70 5.50 -51.93 -0.29 0.41 16 42 H 0.04 0.88 7.50 -51.93 -0.39 0.49 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.10 1.87 8.07 -51.93 -0.42 1.45 16 45 H 0.09 1.61 7.32 -51.93 -0.38 1.23 16 46 H 0.14 2.04 8.01 -52.48 -0.42 1.62 16 47 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 48 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 49 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 50 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -29.69 395.20 -10.21 -39.90 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -8.57 Total: 6.83 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -3.25 Total: -11.39 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.25 Total: -45.75 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.67 Total: 15.66 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.69 -10.21 -39.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330569655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.335 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds