Wall clock time and date at job start Tue Mar 31 2020 18:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47228 * 2 1 4 4 C 1.52999 * 109.47463 * 239.99557 * 2 1 3 5 5 C 1.52995 * 109.47292 * 300.00704 * 4 2 1 6 6 C 1.53002 * 109.46698 * 299.99554 * 5 4 2 7 7 C 1.52999 * 109.47532 * 60.00164 * 6 5 4 8 8 H 1.09003 * 109.46918 * 59.99333 * 7 6 5 9 9 C 1.52994 * 109.47332 * 180.02562 * 7 6 5 10 10 C 1.50697 * 109.47161 * 294.99659 * 9 7 6 11 11 O 1.21278 * 120.00231 * 0.02562 * 10 9 7 12 12 N 1.34779 * 120.00121 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99820 * 0.02562 * 12 10 9 14 14 C 1.50706 * 109.46980 * 269.99231 * 13 12 10 15 15 H 1.07992 * 119.99938 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99923 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99932 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00106 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47636 * 89.99908 * 18 16 14 20 20 H 1.48505 * 109.46957 * 209.99721 * 18 16 14 21 21 H 1.48502 * 109.47060 * 329.99417 * 18 16 14 22 22 C 1.46504 * 120.00145 * 179.97438 * 12 10 9 23 23 C 1.50697 * 109.47359 * 270.00856 * 22 12 10 24 24 C 1.38215 * 119.62061 * 94.97583 * 23 22 12 25 25 C 1.38628 * 119.16579 * 180.02562 * 24 23 22 26 26 C 1.38677 * 118.41857 * 0.02562 * 25 24 23 27 27 C 1.38184 * 119.16194 * 0.02562 * 26 25 24 28 28 N 1.31854 * 119.61606 * 275.00108 * 23 22 12 29 29 C 1.53002 * 109.46952 * 119.99742 * 2 1 3 30 30 H 1.08999 * 109.47098 * 300.00137 * 1 2 3 31 31 H 1.08994 * 109.46772 * 60.00076 * 1 2 3 32 32 H 1.09000 * 109.46719 * 179.97438 * 1 2 3 33 33 H 1.09010 * 109.46482 * 60.00355 * 4 2 1 34 34 H 1.08994 * 109.47390 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47627 * 59.99258 * 5 4 2 36 36 H 1.08999 * 109.47225 * 179.97438 * 5 4 2 37 37 H 1.09003 * 109.47092 * 299.99646 * 6 5 4 38 38 H 1.09000 * 109.47196 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47212 * 175.00186 * 9 7 6 40 40 H 1.09003 * 109.47307 * 54.99808 * 9 7 6 41 41 H 1.08998 * 109.47483 * 29.99075 * 13 12 10 42 42 H 1.09004 * 109.47457 * 149.99274 * 13 12 10 43 43 H 0.97000 * 120.00471 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.46591 * 150.00560 * 22 12 10 45 45 H 1.09003 * 109.46570 * 30.00838 * 22 12 10 46 46 H 1.08004 * 120.42025 * 359.97438 * 24 23 22 47 47 H 1.08003 * 120.79539 * 179.97438 * 25 24 23 48 48 H 1.07996 * 120.42283 * 179.97438 * 26 25 24 49 49 H 1.07999 * 119.61911 * 180.02562 * 27 26 25 50 50 H 1.08999 * 109.47318 * 299.99986 * 29 2 1 51 51 H 1.09004 * 109.46860 * 180.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5300 -2.1637 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2494 8 1 0.4400 -2.1637 1.2493 9 6 2.0405 -2.8846 2.4986 10 6 1.4401 -4.2653 2.5624 11 8 0.6792 -4.6365 1.6940 12 7 1.7495 -5.0881 3.5841 13 6 2.6690 -4.6400 4.6327 14 6 4.0818 -4.9976 4.2485 15 1 4.2752 -5.5072 3.3162 16 6 5.1273 -4.6731 5.0867 17 7 6.3600 -4.9856 4.7516 18 14 4.7927 -3.7910 6.6990 19 1 4.5683 -4.7912 7.7733 20 1 5.9591 -2.9413 7.0496 21 1 3.5849 -2.9389 6.5556 22 6 1.1653 -6.4302 3.6465 23 6 -0.1316 -6.3785 4.4120 24 6 -1.3247 -6.2470 3.7267 25 6 -2.5122 -6.1999 4.4404 26 6 -2.4549 -6.2867 5.8233 27 6 -1.2248 -6.4158 6.4395 28 7 -0.1152 -6.4588 5.7280 29 6 2.0400 -0.7212 1.2493 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6768 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 0.4401 -2.1638 -1.2492 36 1 1.8931 -2.6775 -2.1393 37 1 3.1300 -2.8850 0.0001 38 1 1.6770 -3.9127 -0.0001 39 1 1.7521 -2.3216 3.3863 40 1 3.1269 -2.9624 2.4547 41 1 2.5870 -3.5595 4.7506 42 1 2.4136 -5.1285 5.5731 43 1 7.0956 -4.7577 5.3414 44 1 1.8579 -7.1048 4.1499 45 1 0.9764 -6.7915 2.6355 46 1 -1.3317 -6.1809 2.6487 47 1 -3.4594 -6.0971 3.9317 48 1 -3.3601 -6.2530 6.4113 49 1 -1.1717 -6.4845 7.5160 50 1 1.6767 -0.2074 2.1393 51 1 3.1300 -0.7208 1.2495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330569655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:51 Heat of formation + Delta-G solvation = -43.330576 kcal Electronic energy + Delta-G solvation = -29373.808659 eV Core-core repulsion = 25657.191027 eV Total energy + Delta-G solvation = -3716.617632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.49819 -40.78214 -39.55355 -36.85427 -34.75471 -34.07128 -33.38436 -32.82141 -32.29880 -29.95081 -28.93075 -27.57218 -26.83818 -24.61072 -24.20660 -23.30043 -23.13410 -22.10537 -19.88121 -19.46486 -19.12550 -17.94306 -17.78477 -17.13119 -17.00409 -16.59063 -16.32816 -16.15946 -16.01083 -15.38159 -15.19034 -14.84948 -14.70577 -14.56330 -14.32101 -14.11159 -13.96306 -13.76060 -13.60473 -13.50065 -13.22328 -12.92521 -12.78211 -12.66503 -12.58188 -12.48310 -12.32540 -12.26255 -11.98443 -11.83286 -11.72192 -11.67812 -11.16957 -10.97707 -10.82908 -10.81384 -10.78672 -10.51853 -10.35944 -9.93018 -9.44568 -8.30788 -6.37017 0.13007 0.38771 1.37281 1.38965 1.47794 1.75531 2.25421 2.32961 2.98141 3.03377 3.35724 3.68057 3.78860 3.82149 3.83798 3.98939 4.03767 4.19229 4.22924 4.25785 4.36592 4.41047 4.50169 4.54891 4.57754 4.60714 4.62959 4.68364 4.75190 4.76558 4.83170 4.87430 4.89767 4.90105 4.94433 5.07520 5.10370 5.16606 5.20412 5.24125 5.27739 5.36664 5.41937 5.43518 5.45914 5.50649 5.61938 5.63614 5.72265 5.81191 6.18204 6.60445 6.68783 7.10256 7.24301 7.35319 8.85457 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007714 B = 0.004972 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3628.901820 B = 5630.380748 C = 8177.820497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.117 4.117 7 C -0.058 4.058 8 H 0.073 0.927 9 C -0.132 4.132 10 C 0.516 3.484 11 O -0.572 6.572 12 N -0.590 5.590 13 C 0.225 3.775 14 C -0.536 4.536 15 H 0.032 0.968 16 C 0.023 3.977 17 N -0.940 5.940 18 Si 0.937 3.063 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.243 1.243 22 C 0.167 3.833 23 C 0.097 3.903 24 C -0.160 4.160 25 C -0.078 4.078 26 C -0.163 4.163 27 C 0.081 3.919 28 N -0.507 5.507 29 C -0.110 4.110 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.268 0.732 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.133 0.867 47 H 0.165 0.835 48 H 0.172 0.828 49 H 0.177 0.823 50 H 0.068 0.932 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.925 7.136 -3.385 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.077 4.077 8 H 0.091 0.909 9 C -0.172 4.172 10 C 0.306 3.694 11 O -0.453 6.453 12 N -0.320 5.320 13 C 0.103 3.897 14 C -0.574 4.574 15 H 0.051 0.949 16 C -0.176 4.176 17 N -0.580 5.580 18 Si 0.760 3.240 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.166 1.166 22 C 0.044 3.956 23 C -0.041 4.041 24 C -0.180 4.180 25 C -0.104 4.104 26 C -0.183 4.183 27 C -0.076 4.076 28 N -0.217 5.217 29 C -0.147 4.147 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.151 0.849 47 H 0.182 0.818 48 H 0.189 0.811 49 H 0.194 0.806 50 H 0.086 0.914 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.304 6.858 -3.352 18.913 hybrid contribution 0.186 -0.228 0.398 0.495 sum -17.118 6.630 -2.954 18.593 Atomic orbital electron populations 1.21916 0.94947 1.01767 1.01916 1.21069 0.96255 0.99117 0.94034 0.90136 1.21571 1.00313 0.95078 0.97995 1.21487 1.00864 0.95935 0.96638 1.21616 0.99184 0.99658 0.94980 1.20840 1.00272 0.94399 0.92162 0.90883 1.21761 1.02056 0.92331 1.01004 1.20958 0.80323 0.87941 0.80130 1.90517 1.38312 1.77530 1.38951 1.47922 1.44714 1.14245 1.25151 1.19531 0.87140 0.95834 0.87203 1.21474 0.91122 1.38757 1.06096 0.94918 1.25691 0.94365 0.95963 1.01553 1.70037 1.00094 1.48467 1.39356 0.85871 0.79001 0.79511 0.79628 1.19362 1.20539 1.16613 1.20096 0.90905 0.85131 0.99513 1.21524 0.95488 0.96778 0.90274 1.22132 0.93211 1.00755 1.01906 1.21979 0.98750 0.94919 0.94713 1.22526 1.00130 1.00166 0.95481 1.23298 0.87833 0.95172 1.01319 1.67474 1.33625 1.12728 1.07886 1.21636 1.00437 0.94006 0.98665 0.92585 0.91823 0.93019 0.90704 0.92522 0.91661 0.92249 0.93996 0.92730 0.88843 0.89760 0.93971 0.94624 0.92252 0.90443 0.89179 0.84911 0.81782 0.81050 0.80599 0.91350 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.50 71.98 0.61 -2.20 16 2 C -0.09 -1.76 3.19 -10.79 -0.03 -1.80 16 3 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.11 -2.34 5.45 30.59 0.17 -2.18 16 5 C -0.11 -2.76 5.65 30.59 0.17 -2.59 16 6 C -0.12 -3.67 4.94 30.59 0.15 -3.52 16 7 C -0.06 -1.74 1.56 -10.80 -0.02 -1.76 16 8 H 0.07 2.23 6.24 -2.39 -0.01 2.22 16 9 C -0.13 -4.73 3.73 29.84 0.11 -4.62 16 10 C 0.52 20.90 7.39 87.66 0.65 21.55 16 11 O -0.57 -23.58 13.50 -3.02 -0.04 -23.62 16 12 N -0.59 -25.10 2.44 -830.49 -2.03 -27.13 16 13 C 0.23 10.40 4.03 85.64 0.35 10.75 16 14 C -0.54 -29.61 9.83 25.60 0.25 -29.36 16 15 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 16 C 0.02 1.30 5.47 84.66 0.46 1.77 16 17 N -0.94 -56.86 13.96 21.45 0.30 -56.56 16 18 Si 0.94 41.98 27.47 68.60 1.88 43.86 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 22 C 0.17 6.57 5.71 85.63 0.49 7.06 16 23 C 0.10 3.37 6.36 42.55 0.27 3.64 16 24 C -0.16 -4.65 9.72 22.36 0.22 -4.43 16 25 C -0.08 -1.68 10.18 22.47 0.23 -1.45 16 26 C -0.16 -3.20 10.11 22.36 0.23 -2.97 16 27 C 0.08 2.05 11.18 84.67 0.95 2.99 16 28 N -0.51 -17.38 10.27 -183.89 -1.89 -19.26 16 29 C -0.11 -2.73 4.73 30.60 0.14 -2.59 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.12 4.81 -2.39 -0.01 1.11 16 33 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.57 6.43 -2.39 -0.02 1.56 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 2.01 5.95 -2.39 -0.01 2.00 16 39 H 0.09 3.11 7.40 -2.39 -0.02 3.09 16 40 H 0.08 3.41 8.00 -2.39 -0.02 3.39 16 41 H 0.04 1.87 5.50 -2.39 -0.01 1.85 16 42 H 0.04 1.68 7.50 -2.38 -0.02 1.66 16 43 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.08 3.24 8.07 -2.39 -0.02 3.22 16 45 H 0.09 3.43 7.32 -2.39 -0.02 3.41 16 46 H 0.13 3.93 8.01 -2.91 -0.02 3.91 16 47 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 48 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 49 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 50 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -67.79 395.20 4.46 -63.32 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.84 Total: 31.09 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 5.39 Total: -11.70 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.62 Total: -102.96 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.04 Total: -23.62 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.86 kcal Total: -67.79 4.46 -63.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330569655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.992 kcal (2) G-P(sol) polarization free energy of solvation -67.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds