Wall clock time and date at job start Tue Mar 31 2020 18:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47229 * 2 1 4 4 C 1.53001 * 109.46869 * 239.99558 * 2 1 3 5 5 C 1.53004 * 109.46869 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47255 * 60.00131 * 5 4 2 7 7 C 1.52996 * 109.47135 * 300.00272 * 6 5 4 8 8 H 1.09001 * 109.47301 * 299.99691 * 7 6 5 9 9 C 1.53000 * 109.47135 * 180.02562 * 7 6 5 10 10 N 1.46498 * 109.47178 * 64.99849 * 9 7 6 11 11 C 1.34779 * 119.99676 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00164 * 0.27773 * 11 10 9 13 13 N 1.34782 * 119.99772 * 179.97438 * 11 10 9 14 14 C 1.39238 * 120.00181 * 174.91876 * 13 11 10 15 15 C 1.39487 * 119.83144 * 325.32785 * 14 13 11 16 16 C 1.36376 * 120.16569 * 179.75997 * 15 14 13 17 17 C 1.40864 * 119.82824 * 0.50975 * 16 15 14 18 18 C 1.41159 * 120.16338 * 179.76171 * 17 16 15 19 19 H 1.08001 * 120.00066 * 205.33628 * 18 17 16 20 20 C 1.39895 * 120.00077 * 25.34201 * 18 17 16 21 21 N 1.30888 * 119.99867 * 16.82321 * 20 18 17 22 22 Si 1.86791 * 120.00209 * 196.83356 * 20 18 17 23 23 H 1.48496 * 109.47762 * 89.99741 * 22 20 18 24 24 H 1.48508 * 109.47136 * 209.99685 * 22 20 18 25 25 H 1.48499 * 109.47164 * 329.99087 * 22 20 18 26 26 C 1.40868 * 119.67503 * 359.74204 * 17 16 15 27 27 C 1.36374 * 119.82505 * 359.97438 * 26 17 16 28 28 C 1.53000 * 109.46911 * 120.00117 * 2 1 3 29 29 H 1.08994 * 109.47721 * 59.99648 * 28 2 1 30 30 C 1.53008 * 109.47153 * 299.99486 * 28 2 1 31 31 H 1.09001 * 109.47114 * 300.00007 * 1 2 3 32 32 H 1.08997 * 109.47260 * 60.00123 * 1 2 3 33 33 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47118 * 299.99957 * 4 2 1 35 35 H 1.08997 * 109.46919 * 60.00110 * 4 2 1 36 36 H 1.09001 * 109.47114 * 180.02562 * 5 4 2 37 37 H 1.09003 * 109.46982 * 300.00008 * 5 4 2 38 38 H 1.09001 * 109.47242 * 179.97438 * 6 5 4 39 39 H 1.09005 * 109.46506 * 59.99874 * 6 5 4 40 40 H 1.09004 * 109.46809 * 304.99518 * 9 7 6 41 41 H 1.09007 * 109.47253 * 184.99592 * 9 7 6 42 42 H 0.96994 * 119.99872 * 359.97438 * 10 9 7 43 43 H 0.97005 * 119.99809 * 354.92539 * 13 11 10 44 44 H 1.08000 * 119.91333 * 0.02562 * 15 14 13 45 45 H 1.08002 * 120.08053 * 180.24995 * 16 15 14 46 46 H 0.96997 * 119.99774 * 179.97438 * 21 20 18 47 47 H 1.08001 * 120.08829 * 179.97438 * 26 17 16 48 48 H 1.08007 * 119.91446 * 180.02562 * 27 26 17 49 49 H 1.08994 * 109.46939 * 300.00640 * 30 28 2 50 50 H 1.08999 * 109.46311 * 60.00341 * 30 28 2 51 51 H 1.08997 * 109.47174 * 180.02562 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4435 0.0004 7 6 3.5695 -0.7222 1.2496 8 1 3.9332 0.3053 1.2498 9 6 4.0795 -1.4434 2.4988 10 7 5.5396 -1.3400 2.5605 11 6 6.2126 -1.9056 3.5822 12 8 5.6084 -2.5059 4.4498 13 7 7.5559 -1.8109 3.6387 14 6 8.2425 -2.3021 4.7459 15 6 7.6665 -2.2167 6.0135 16 6 8.3309 -2.7001 7.1020 17 6 9.6064 -3.2769 6.9452 18 6 10.3025 -3.7748 8.0678 19 1 11.3808 -3.8336 8.0521 20 6 9.5956 -4.1923 9.2005 21 7 8.3123 -4.4360 9.1180 22 14 10.4832 -4.4016 10.8307 23 1 10.4441 -3.1222 11.5836 24 1 9.8154 -5.4639 11.6251 25 1 11.8956 -4.7854 10.5797 26 6 10.1838 -3.3547 5.6627 27 6 9.5048 -2.8723 4.5828 28 6 2.0400 -0.7213 1.2492 29 1 1.6767 -1.7489 1.2493 30 6 1.5300 0.0001 2.4985 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6766 -1.7490 -1.2491 35 1 1.6766 -0.2076 -2.1392 36 1 3.9333 -1.2354 -2.1391 37 1 3.9337 0.3056 -1.2487 38 1 5.1695 -1.4443 0.0004 39 1 3.7157 -2.4710 0.0001 40 1 3.7911 -2.4937 2.4552 41 1 3.6449 -0.9838 3.3866 42 1 6.0219 -0.8651 1.8658 43 1 8.0443 -1.4004 2.9080 44 1 6.6902 -1.7706 6.1325 45 1 7.8819 -2.6369 8.0822 46 1 7.8223 -4.7258 9.9034 47 1 11.1615 -3.7952 5.5349 48 1 9.9459 -2.9316 3.5987 49 1 1.8934 1.0277 2.4985 50 1 0.4401 0.0000 2.4985 51 1 1.8937 -0.5135 3.3885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431004998.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:39 Heat of formation + Delta-G solvation = -42.484407 kcal Electronic energy + Delta-G solvation = -27803.205979 eV Core-core repulsion = 24086.625040 eV Total energy + Delta-G solvation = -3716.580939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.19375 -39.38909 -37.36375 -35.11997 -34.26043 -33.32307 -32.95047 -32.02799 -29.42672 -28.94935 -27.82660 -26.33505 -25.35354 -24.38337 -21.59055 -21.35852 -21.10418 -20.65418 -20.18528 -19.71139 -17.83141 -17.24283 -16.62568 -15.48834 -15.37181 -15.14855 -14.99639 -14.93092 -14.43805 -14.26698 -13.99357 -13.85835 -13.51622 -13.33678 -12.95813 -12.70377 -12.58740 -12.20260 -12.09880 -12.03733 -11.95155 -11.83349 -11.75520 -11.62890 -11.41920 -11.13465 -11.09629 -11.07048 -10.88133 -10.67867 -10.46276 -10.24531 -10.14892 -9.90715 -9.81281 -9.46905 -9.18979 -8.77783 -8.62558 -7.45177 -6.91219 -6.65940 -4.22122 2.74370 3.09836 3.11960 3.14962 3.15315 3.23987 3.82020 3.98761 4.27294 4.34773 4.38874 4.68761 4.71210 4.72565 4.83855 4.96242 5.05841 5.11300 5.15811 5.24540 5.27445 5.40714 5.45785 5.52320 5.59354 5.69918 5.70380 5.73858 5.77128 5.81302 5.84821 5.91409 5.96252 5.99028 6.07025 6.18699 6.21102 6.28195 6.44198 6.71546 6.89534 6.91168 7.11838 7.18278 7.36506 7.43612 7.68540 7.93528 8.08276 8.12524 8.33668 8.58535 8.70289 8.95674 9.00568 9.22119 10.26827 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.002021 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.230508 B =13848.732981 C =14644.008910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.093 4.093 8 H 0.075 0.925 9 C 0.143 3.857 10 N -0.752 5.752 11 C 0.692 3.308 12 O -0.575 6.575 13 N -0.669 5.669 14 C 0.017 3.983 15 C -0.086 4.086 16 C -0.153 4.153 17 C 0.103 3.897 18 C -0.461 4.461 19 H 0.077 0.923 20 C 0.073 3.927 21 N -0.791 5.791 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.214 4.214 27 C -0.108 4.108 28 C -0.077 4.077 29 H 0.073 0.927 30 C -0.156 4.156 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.390 0.610 43 H 0.389 0.611 44 H 0.101 0.899 45 H 0.120 0.880 46 H 0.280 0.720 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.054 0.946 50 H 0.058 0.942 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.314 9.639 -18.483 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.111 4.111 8 H 0.094 0.906 9 C 0.018 3.982 10 N -0.410 5.410 11 C 0.393 3.607 12 O -0.451 6.451 13 N -0.315 5.315 14 C -0.076 4.076 15 C -0.107 4.107 16 C -0.173 4.173 17 C 0.101 3.899 18 C -0.491 4.491 19 H 0.095 0.905 20 C -0.144 4.144 21 N -0.416 5.416 22 Si 0.733 3.267 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.234 4.234 27 C -0.129 4.129 28 C -0.096 4.096 29 H 0.091 0.909 30 C -0.213 4.213 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.223 0.777 43 H 0.222 0.778 44 H 0.119 0.881 45 H 0.137 0.863 46 H 0.091 0.909 47 H 0.113 0.887 48 H 0.107 0.893 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.114 8.991 -17.519 23.659 hybrid contribution 0.770 0.181 -0.020 0.791 sum -12.345 9.172 -17.539 23.327 Atomic orbital electron populations 1.21894 0.95304 1.01858 1.01644 1.21144 0.95401 0.99496 0.94325 0.91272 1.21606 0.95538 1.00737 0.97373 1.21533 0.95656 1.00691 0.97793 1.21606 1.00392 0.99584 0.93694 1.21418 0.95615 0.99966 0.94151 0.90618 1.21252 0.78939 1.00577 0.97413 1.45125 1.07370 1.61015 1.27440 1.16036 0.82165 0.80151 0.82374 1.90948 1.67684 1.46489 1.40028 1.42115 1.04465 1.62891 1.22047 1.16970 0.94451 1.10824 0.85353 1.20432 0.98561 1.00441 0.91223 1.20985 0.96947 1.01707 0.97689 1.17657 0.91855 0.88758 0.91672 1.19520 0.94716 1.37111 0.97726 0.90467 1.25930 0.94804 0.93001 1.00713 1.69872 1.08704 1.31971 1.31060 0.86313 0.80463 0.78673 0.81227 1.19340 1.20389 1.18692 1.20528 1.01058 1.09335 0.92500 1.20019 0.94863 1.00691 0.97319 1.21079 0.93674 1.00129 0.94695 0.90861 1.22006 1.01110 1.00566 0.97653 0.92275 0.92944 0.92715 0.91969 0.92210 0.92070 0.92073 0.91871 0.91669 0.91941 0.91403 0.77681 0.77819 0.88130 0.86268 0.90877 0.88700 0.89326 0.92690 0.92339 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.84 37.16 0.33 -0.58 16 2 C -0.09 -0.56 2.25 -90.62 -0.20 -0.77 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -0.73 5.20 -26.73 -0.14 -0.87 16 5 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 6 C -0.12 -0.89 5.08 -26.73 -0.14 -1.02 16 7 C -0.09 -0.77 1.75 -90.65 -0.16 -0.92 16 8 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 9 C 0.14 1.68 4.85 -4.04 -0.02 1.66 16 10 N -0.75 -9.82 5.29 -65.22 -0.34 -10.17 16 11 C 0.69 12.93 8.28 -86.91 -0.72 12.21 16 12 O -0.58 -13.65 14.09 5.29 0.07 -13.57 16 13 N -0.67 -12.24 5.31 -14.10 -0.07 -12.31 16 14 C 0.02 0.38 6.26 -83.57 -0.52 -0.14 16 15 C -0.09 -2.22 8.57 -39.79 -0.34 -2.56 16 16 C -0.15 -4.22 8.63 -39.26 -0.34 -4.56 16 17 C 0.10 2.83 5.57 -106.80 -0.59 2.24 16 18 C -0.46 -12.48 9.04 -37.85 -0.34 -12.82 16 19 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 20 C 0.07 1.89 5.15 -17.33 -0.09 1.81 16 21 N -0.79 -21.38 10.94 55.55 0.61 -20.77 16 22 Si 0.91 19.12 29.59 -169.99 -5.03 14.09 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 25 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.21 -5.31 9.74 -39.26 -0.38 -5.69 16 27 C -0.11 -2.44 9.89 -39.79 -0.39 -2.84 16 28 C -0.08 -0.59 1.77 -90.64 -0.16 -0.75 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 C -0.16 -1.24 8.50 37.16 0.32 -0.92 16 31 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.49 7.18 -51.93 -0.37 0.11 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.88 6.17 -51.92 -0.32 0.56 16 42 H 0.39 3.84 7.67 -40.82 -0.31 3.53 16 43 H 0.39 5.47 8.83 -40.82 -0.36 5.11 16 44 H 0.10 2.62 6.49 -52.49 -0.34 2.28 16 45 H 0.12 3.40 6.18 -52.49 -0.32 3.07 16 46 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 47 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 48 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 49 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 51 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 LS Contribution 393.56 15.07 5.93 5.93 Total: -1.00 -31.64 393.56 -11.39 -43.03 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -8.50 Total: 11.24 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -4.06 Total: -17.47 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.19 Total: -43.25 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.07 Total: -13.57 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.64 -11.39 -43.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431004998.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.545 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds