Wall clock time and date at job start Tue Mar 31 2020 18:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47229 * 2 1 4 4 C 1.53001 * 109.46869 * 239.99558 * 2 1 3 5 5 C 1.53004 * 109.46869 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47255 * 60.00131 * 5 4 2 7 7 C 1.52996 * 109.47135 * 300.00272 * 6 5 4 8 8 H 1.09001 * 109.47301 * 299.99691 * 7 6 5 9 9 C 1.53000 * 109.47135 * 180.02562 * 7 6 5 10 10 N 1.46498 * 109.47178 * 64.99849 * 9 7 6 11 11 C 1.34779 * 119.99676 * 180.02562 * 10 9 7 12 12 O 1.21581 * 120.00164 * 0.27773 * 11 10 9 13 13 N 1.34782 * 119.99772 * 179.97438 * 11 10 9 14 14 C 1.39238 * 120.00181 * 174.91876 * 13 11 10 15 15 C 1.39487 * 119.83144 * 325.32785 * 14 13 11 16 16 C 1.36376 * 120.16569 * 179.75997 * 15 14 13 17 17 C 1.40864 * 119.82824 * 0.50975 * 16 15 14 18 18 C 1.41159 * 120.16338 * 179.76171 * 17 16 15 19 19 H 1.08001 * 120.00066 * 205.33628 * 18 17 16 20 20 C 1.39895 * 120.00077 * 25.34201 * 18 17 16 21 21 N 1.30888 * 119.99867 * 16.82321 * 20 18 17 22 22 Si 1.86791 * 120.00209 * 196.83356 * 20 18 17 23 23 H 1.48496 * 109.47762 * 89.99741 * 22 20 18 24 24 H 1.48508 * 109.47136 * 209.99685 * 22 20 18 25 25 H 1.48499 * 109.47164 * 329.99087 * 22 20 18 26 26 C 1.40868 * 119.67503 * 359.74204 * 17 16 15 27 27 C 1.36374 * 119.82505 * 359.97438 * 26 17 16 28 28 C 1.53000 * 109.46911 * 120.00117 * 2 1 3 29 29 H 1.08994 * 109.47721 * 59.99648 * 28 2 1 30 30 C 1.53008 * 109.47153 * 299.99486 * 28 2 1 31 31 H 1.09001 * 109.47114 * 300.00007 * 1 2 3 32 32 H 1.08997 * 109.47260 * 60.00123 * 1 2 3 33 33 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47118 * 299.99957 * 4 2 1 35 35 H 1.08997 * 109.46919 * 60.00110 * 4 2 1 36 36 H 1.09001 * 109.47114 * 180.02562 * 5 4 2 37 37 H 1.09003 * 109.46982 * 300.00008 * 5 4 2 38 38 H 1.09001 * 109.47242 * 179.97438 * 6 5 4 39 39 H 1.09005 * 109.46506 * 59.99874 * 6 5 4 40 40 H 1.09004 * 109.46809 * 304.99518 * 9 7 6 41 41 H 1.09007 * 109.47253 * 184.99592 * 9 7 6 42 42 H 0.96994 * 119.99872 * 359.97438 * 10 9 7 43 43 H 0.97005 * 119.99809 * 354.92539 * 13 11 10 44 44 H 1.08000 * 119.91333 * 0.02562 * 15 14 13 45 45 H 1.08002 * 120.08053 * 180.24995 * 16 15 14 46 46 H 0.96997 * 119.99774 * 179.97438 * 21 20 18 47 47 H 1.08001 * 120.08829 * 179.97438 * 26 17 16 48 48 H 1.08007 * 119.91446 * 180.02562 * 27 26 17 49 49 H 1.08994 * 109.46939 * 300.00640 * 30 28 2 50 50 H 1.08999 * 109.46311 * 60.00341 * 30 28 2 51 51 H 1.08997 * 109.47174 * 180.02562 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4435 0.0004 7 6 3.5695 -0.7222 1.2496 8 1 3.9332 0.3053 1.2498 9 6 4.0795 -1.4434 2.4988 10 7 5.5396 -1.3400 2.5605 11 6 6.2126 -1.9056 3.5822 12 8 5.6084 -2.5059 4.4498 13 7 7.5559 -1.8109 3.6387 14 6 8.2425 -2.3021 4.7459 15 6 7.6665 -2.2167 6.0135 16 6 8.3309 -2.7001 7.1020 17 6 9.6064 -3.2769 6.9452 18 6 10.3025 -3.7748 8.0678 19 1 11.3808 -3.8336 8.0521 20 6 9.5956 -4.1923 9.2005 21 7 8.3123 -4.4360 9.1180 22 14 10.4832 -4.4016 10.8307 23 1 10.4441 -3.1222 11.5836 24 1 9.8154 -5.4639 11.6251 25 1 11.8956 -4.7854 10.5797 26 6 10.1838 -3.3547 5.6627 27 6 9.5048 -2.8723 4.5828 28 6 2.0400 -0.7213 1.2492 29 1 1.6767 -1.7489 1.2493 30 6 1.5300 0.0001 2.4985 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6766 -1.7490 -1.2491 35 1 1.6766 -0.2076 -2.1392 36 1 3.9333 -1.2354 -2.1391 37 1 3.9337 0.3056 -1.2487 38 1 5.1695 -1.4443 0.0004 39 1 3.7157 -2.4710 0.0001 40 1 3.7911 -2.4937 2.4552 41 1 3.6449 -0.9838 3.3866 42 1 6.0219 -0.8651 1.8658 43 1 8.0443 -1.4004 2.9080 44 1 6.6902 -1.7706 6.1325 45 1 7.8819 -2.6369 8.0822 46 1 7.8223 -4.7258 9.9034 47 1 11.1615 -3.7952 5.5349 48 1 9.9459 -2.9316 3.5987 49 1 1.8934 1.0277 2.4985 50 1 0.4401 0.0000 2.4985 51 1 1.8937 -0.5135 3.3885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431004998.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:38 Heat of formation + Delta-G solvation = -59.985580 kcal Electronic energy + Delta-G solvation = -27803.964887 eV Core-core repulsion = 24086.625040 eV Total energy + Delta-G solvation = -3717.339847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.47094 -40.39108 -39.15114 -36.41718 -35.90362 -34.72462 -33.90824 -33.01407 -31.39060 -30.74294 -28.63856 -27.21170 -26.56010 -25.64559 -23.30528 -22.90401 -22.02199 -21.51392 -21.47245 -20.62407 -19.35064 -19.15870 -18.20833 -17.11409 -16.57842 -16.43305 -15.84873 -15.74958 -15.53840 -15.44670 -15.30609 -15.06092 -14.81485 -14.48729 -14.22776 -14.07872 -13.91240 -13.67254 -13.39897 -13.27576 -12.85346 -12.79980 -12.71433 -12.65176 -12.63275 -12.46547 -12.30917 -12.23390 -11.75881 -11.72545 -11.70701 -11.67656 -11.29070 -11.26573 -11.06586 -10.82076 -10.77319 -10.51613 -10.02884 -9.43349 -8.81067 -8.57829 -6.24231 0.88266 1.16015 1.38650 1.49250 1.53252 1.81412 2.20905 2.24283 2.80008 3.41114 3.61454 3.72654 3.76532 3.80474 4.05905 4.18704 4.33471 4.43998 4.45537 4.46694 4.48233 4.54916 4.61308 4.65735 4.78411 4.81225 4.85925 4.93126 4.99441 5.02937 5.07826 5.11440 5.14046 5.19390 5.20756 5.24483 5.32058 5.33228 5.35862 5.42149 5.45435 5.46178 5.51711 5.60162 5.68594 5.68962 5.81120 6.10969 6.14551 6.23866 6.38437 6.70734 6.95163 7.04255 7.20374 7.70806 8.36670 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.002021 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.230508 B =13848.732981 C =14644.008910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.073 0.927 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.080 4.080 8 H 0.087 0.913 9 C 0.142 3.858 10 N -0.725 5.725 11 C 0.689 3.311 12 O -0.629 6.629 13 N -0.658 5.658 14 C 0.030 3.970 15 C -0.101 4.101 16 C -0.178 4.178 17 C 0.070 3.930 18 C -0.494 4.494 19 H 0.082 0.918 20 C 0.027 3.973 21 N -0.832 5.832 22 Si 0.987 3.013 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.220 4.220 27 C -0.102 4.102 28 C -0.075 4.075 29 H 0.064 0.936 30 C -0.155 4.155 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.411 0.589 43 H 0.415 0.585 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.286 0.714 47 H 0.111 0.889 48 H 0.135 0.865 49 H 0.059 0.941 50 H 0.065 0.935 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 10.675 -20.889 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.092 0.908 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.152 4.152 7 C -0.098 4.098 8 H 0.106 0.894 9 C 0.018 3.982 10 N -0.383 5.383 11 C 0.390 3.610 12 O -0.510 6.510 13 N -0.306 5.306 14 C -0.064 4.064 15 C -0.121 4.121 16 C -0.198 4.198 17 C 0.067 3.933 18 C -0.524 4.524 19 H 0.100 0.900 20 C -0.187 4.187 21 N -0.458 5.458 22 Si 0.807 3.193 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.176 1.176 26 C -0.240 4.240 27 C -0.122 4.122 28 C -0.094 4.094 29 H 0.083 0.917 30 C -0.212 4.212 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.248 0.752 43 H 0.252 0.748 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.130 0.870 48 H 0.152 0.848 49 H 0.078 0.922 50 H 0.084 0.916 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.406 10.075 -20.022 25.618 hybrid contribution 0.445 -0.096 0.561 0.722 sum -11.961 9.979 -19.461 24.927 Atomic orbital electron populations 1.21887 0.94899 1.01797 1.02066 1.21105 0.95725 0.99450 0.93606 0.90829 1.21608 0.95502 1.00533 0.97554 1.21508 0.95640 1.00971 0.97153 1.21601 1.00601 0.99102 0.93890 1.21340 0.95974 1.00001 0.92529 0.89440 1.21353 0.77861 1.00041 0.98906 1.44893 1.07824 1.59371 1.26184 1.16264 0.82123 0.79926 0.82732 1.90927 1.68738 1.48902 1.42406 1.41857 1.04488 1.62762 1.21519 1.17018 0.94632 1.09157 0.85600 1.20446 0.98171 1.01031 0.92466 1.20875 0.97914 1.03728 0.97328 1.18010 0.92180 0.89728 0.93346 1.19808 0.95090 1.38529 0.98956 0.89963 1.26884 0.95432 0.92006 1.04333 1.69961 1.10470 1.33037 1.32362 0.85138 0.79348 0.78803 0.75984 1.18776 1.19628 1.17638 1.20821 1.01855 1.09179 0.92164 1.20381 0.94182 0.98879 0.98773 1.21065 0.93127 0.99880 0.95323 0.91720 1.21994 1.01657 1.00578 0.97021 0.92291 0.92110 0.93040 0.92496 0.91215 0.91477 0.91274 0.91472 0.92708 0.93628 0.92763 0.75210 0.74832 0.89394 0.88652 0.90396 0.87047 0.84750 0.92191 0.91564 0.93735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.84 71.98 0.64 -0.92 16 2 C -0.08 -0.90 2.25 -10.79 -0.02 -0.92 16 3 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.11 -1.19 5.20 30.60 0.16 -1.03 16 5 C -0.12 -1.19 5.92 30.60 0.18 -1.01 16 6 C -0.11 -1.52 5.08 30.59 0.16 -1.36 16 7 C -0.08 -1.19 1.75 -10.81 -0.02 -1.21 16 8 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 9 C 0.14 3.31 4.85 86.38 0.42 3.73 16 10 N -0.73 -17.88 5.29 -478.52 -2.53 -20.41 16 11 C 0.69 25.29 8.28 179.05 1.48 26.78 16 12 O -0.63 -30.60 14.09 -3.97 -0.06 -30.66 16 13 N -0.66 -22.84 5.31 -316.78 -1.68 -24.52 16 14 C 0.03 1.36 6.26 38.56 0.24 1.60 16 15 C -0.10 -5.36 8.57 22.14 0.19 -5.17 16 16 C -0.18 -10.30 8.63 22.48 0.19 -10.10 16 17 C 0.07 3.94 5.57 -21.28 -0.12 3.82 16 18 C -0.49 -27.45 9.04 23.39 0.21 -27.24 16 19 H 0.08 4.30 7.90 -2.91 -0.02 4.28 16 20 C 0.03 1.45 5.15 85.23 0.44 1.89 16 21 N -0.83 -46.92 10.94 21.82 0.24 -46.68 16 22 Si 0.99 39.83 29.59 68.60 2.03 41.86 16 23 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 24 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 25 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 26 C -0.22 -10.79 9.74 22.48 0.22 -10.57 16 27 C -0.10 -4.38 9.89 22.13 0.22 -4.16 16 28 C -0.07 -1.06 1.77 -10.81 -0.02 -1.08 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 C -0.16 -2.38 8.50 71.98 0.61 -1.77 16 31 H 0.06 0.62 6.43 -2.39 -0.02 0.60 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.84 7.18 -2.39 -0.02 0.82 16 39 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.05 1.23 8.14 -2.38 -0.02 1.22 16 41 H 0.05 1.44 6.17 -2.38 -0.01 1.43 16 42 H 0.41 6.87 7.67 -92.71 -0.71 6.16 16 43 H 0.41 10.21 8.83 -92.70 -0.82 9.39 16 44 H 0.09 4.82 6.49 -2.91 -0.02 4.80 16 45 H 0.10 5.84 6.18 -2.91 -0.02 5.82 16 46 H 0.29 14.67 8.30 -92.71 -0.77 13.90 16 47 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 48 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 49 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.07 0.90 6.43 -2.39 -0.02 0.88 16 51 H 0.04 0.84 6.32 -2.39 -0.02 0.83 16 Total: -1.00 -72.36 393.56 2.58 -69.78 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: -0.60 Total: 39.38 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 5.18 Total: -28.74 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -3.97 Total: -91.61 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.06 Total: -30.66 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -72.36 2.58 -69.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431004998.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.794 kcal (2) G-P(sol) polarization free energy of solvation -72.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds