Wall clock time and date at job start Tue Mar 31 2020 16:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46650 * 2 1 4 4 C 1.52998 * 109.47201 * 240.00241 * 2 1 3 5 5 N 1.46501 * 109.47540 * 64.99802 * 4 2 1 6 6 C 1.36931 * 120.00139 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00165 * 359.97438 * 6 5 4 8 8 C 1.38815 * 119.99987 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99935 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00051 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47155 * 59.99455 * 10 8 6 12 12 H 1.48500 * 109.47072 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47052 * 299.99548 * 10 8 6 14 14 C 1.53000 * 109.47526 * 119.99870 * 2 1 3 15 15 N 1.46500 * 109.46647 * 295.00324 * 14 2 1 16 16 C 1.34785 * 119.99749 * 179.97438 * 15 14 2 17 17 O 1.21558 * 119.99651 * 0.02562 * 16 15 14 18 18 C 1.47839 * 120.00101 * 179.97438 * 16 15 14 19 19 C 1.39597 * 120.14565 * 0.30246 * 18 16 15 20 20 C 1.37935 * 119.85579 * 180.29471 * 19 18 16 21 21 C 1.38387 * 120.14051 * 359.42436 * 20 19 18 22 22 C 1.38335 * 120.29184 * 0.26038 * 21 20 19 23 23 C 1.50700 * 119.92188 * 180.02562 * 22 21 20 24 24 C 1.54261 * 110.03825 * 57.90775 * 23 22 21 25 25 C 1.54970 * 104.16054 * 217.13607 * 24 23 22 26 26 C 1.54892 * 102.77560 * 37.88535 * 25 24 23 27 27 C 1.53876 * 110.03359 * 300.68312 * 23 22 21 28 28 C 1.37970 * 120.14696 * 0.03738 * 22 21 20 29 29 H 1.09000 * 109.47376 * 60.00136 * 1 2 3 30 30 H 1.09006 * 109.46650 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47339 * 300.00078 * 1 2 3 32 32 H 1.09004 * 109.47503 * 184.99908 * 4 2 1 33 33 H 1.09001 * 109.46744 * 304.99638 * 4 2 1 34 34 H 0.97001 * 119.99760 * 359.97438 * 5 4 2 35 35 H 0.96996 * 119.99764 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47210 * 175.00636 * 14 2 1 37 37 H 1.09004 * 109.46744 * 55.00081 * 14 2 1 38 38 H 0.96996 * 120.00628 * 359.97438 * 15 14 2 39 39 H 1.08004 * 120.07574 * 0.02562 * 19 18 16 40 40 H 1.08002 * 119.93294 * 179.70879 * 20 19 18 41 41 H 1.08006 * 119.84850 * 180.27716 * 21 20 19 42 42 H 1.09007 * 110.01373 * 179.29830 * 23 22 21 43 43 H 1.09000 * 110.48566 * 335.77705 * 24 23 22 44 44 H 1.08996 * 110.48887 * 98.42739 * 24 23 22 45 45 H 1.08999 * 110.71985 * 279.57209 * 25 24 23 46 46 H 1.09001 * 110.92397 * 156.29202 * 25 24 23 47 47 H 1.09000 * 110.47988 * 203.40836 * 26 25 24 48 48 H 1.08993 * 110.59757 * 80.81856 * 26 25 24 49 49 H 1.08999 * 110.03520 * 238.57731 * 27 23 22 50 50 H 1.09007 * 110.02851 * 359.95927 * 27 23 22 51 51 H 1.08004 * 120.07264 * 179.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6524 0.0354 -2.4424 6 6 2.0011 -0.4208 -3.6856 7 1 2.5621 -1.3381 -3.7865 8 6 1.6343 0.2964 -4.8161 9 7 0.9510 1.4146 -4.6931 10 14 2.1105 -0.3255 -6.5120 11 1 1.5172 -1.6690 -6.7312 12 1 1.6029 0.6138 -7.5442 13 1 3.5896 -0.4158 -6.6087 14 6 2.0401 -0.7212 1.2492 15 7 1.6524 0.0355 2.4423 16 6 1.9956 -0.4135 3.6660 17 8 2.6271 -1.4459 3.7795 18 6 1.6050 0.3504 4.8700 19 6 0.8752 1.5336 4.7434 20 6 0.5191 2.2447 5.8704 21 6 0.8735 1.7812 7.1252 22 6 1.5910 0.6060 7.2580 23 6 1.9720 0.1086 8.6286 24 6 0.7073 -0.0912 9.4889 25 6 1.1410 0.3516 10.9092 26 6 2.0631 1.5629 10.6237 27 6 2.8341 1.1595 9.3499 28 6 1.9587 -0.1116 6.1385 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.1263 -0.7994 -1.2057 33 1 1.6054 -1.7198 -1.2951 34 1 1.1482 0.8591 -2.3518 35 1 0.6944 1.9155 -5.4831 36 1 3.1263 -0.7993 1.2056 37 1 1.6054 -1.7198 1.2951 38 1 1.1488 0.8595 2.3517 39 1 0.5937 1.8939 3.7648 40 1 -0.0415 3.1628 5.7736 41 1 0.5883 2.3394 8.0048 42 1 2.5195 -0.8304 8.5459 43 1 -0.1050 0.5379 9.1248 44 1 0.4083 -1.1394 9.4900 45 1 1.6925 -0.4443 11.4097 46 1 0.2784 0.6542 11.5030 47 1 2.7526 1.7212 11.4529 48 1 1.4720 2.4607 10.4435 49 1 3.7995 0.7303 9.6179 50 1 2.9775 2.0290 8.7082 51 1 2.5192 -1.0288 6.2435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753638469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:49 Heat of formation + Delta-G solvation = -29.903110 kcal Electronic energy + Delta-G solvation = -26974.142035 eV Core-core repulsion = 23258.106662 eV Total energy + Delta-G solvation = -3716.035373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.59184 -39.37628 -37.59076 -36.76248 -34.42872 -32.79508 -31.99587 -31.36167 -29.98031 -29.10573 -27.95997 -26.59112 -25.49601 -23.89653 -22.66009 -22.25857 -21.12718 -20.94358 -20.21324 -19.39021 -17.91255 -17.04171 -16.53797 -16.34690 -15.90058 -15.65270 -15.41864 -14.83065 -14.74594 -14.35204 -14.27280 -13.84059 -13.82190 -13.63212 -13.54753 -13.09677 -13.00580 -12.59564 -12.40632 -12.28133 -12.05587 -11.77356 -11.71506 -11.53886 -11.48744 -11.25477 -11.06105 -11.04691 -10.90234 -10.86388 -10.70379 -10.57777 -10.42728 -10.12698 -9.91842 -9.66262 -9.28621 -9.08566 -8.94501 -8.86820 -6.92061 -5.76697 -3.05044 0.60557 1.04785 2.72571 3.11336 3.45039 3.49208 3.50354 3.60972 4.10740 4.20181 4.27599 4.51058 4.57993 4.59754 4.63662 4.80447 4.96045 5.02117 5.03180 5.07322 5.13038 5.14225 5.21462 5.24616 5.33030 5.37919 5.42394 5.48823 5.56826 5.58112 5.61727 5.70762 5.78505 5.80875 5.87303 5.90460 5.95465 5.98243 6.03691 6.07803 6.12634 6.23572 6.26111 6.38696 6.46141 6.58722 6.64935 6.77187 6.86712 7.45917 7.70445 8.15334 8.42446 9.53683 10.10931 10.45857 11.46217 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.038591 B = 0.001653 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.387259 B =16936.087017 C =17278.618689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.719 5.719 16 C 0.554 3.446 17 O -0.540 6.540 18 C -0.128 4.128 19 C -0.091 4.091 20 C -0.124 4.124 21 C -0.092 4.092 22 C -0.083 4.083 23 C -0.055 4.055 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.119 4.119 28 C -0.059 4.059 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.021 0.979 33 H 0.023 0.977 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.068 0.932 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 2.368 33.036 33.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.371 5.371 16 C 0.341 3.659 17 O -0.418 6.418 18 C -0.131 4.131 19 C -0.110 4.110 20 C -0.142 4.142 21 C -0.111 4.111 22 C -0.083 4.083 23 C -0.073 4.073 24 C -0.155 4.155 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.156 4.156 28 C -0.078 4.078 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.235 0.765 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.147 1.518 32.930 32.985 hybrid contribution -0.188 0.438 -1.161 1.255 sum -1.335 1.957 31.769 31.857 Atomic orbital electron populations 1.21797 0.94656 1.02007 1.01456 1.21559 0.96724 1.00520 0.94193 0.90517 1.20575 0.96639 0.94216 0.85342 1.42322 1.66935 1.27683 1.00556 1.19204 1.28778 1.05448 0.83685 0.91192 1.24731 1.01010 0.97386 0.97844 1.69646 1.43539 1.16563 1.28593 0.86252 0.78025 0.77700 0.84117 1.21272 1.21698 1.21267 1.21454 1.00266 0.95295 0.82711 1.45996 1.57400 1.27834 1.05850 1.18278 0.79493 0.84868 0.83249 1.90771 1.40095 1.24221 1.86746 1.19986 1.02436 0.96826 0.93841 1.21342 0.96521 0.93847 0.99246 1.21093 1.00718 1.00219 0.92178 1.21167 0.96865 0.95519 0.97518 1.19828 0.98522 0.95237 0.94675 1.20818 0.96629 0.99014 0.90850 1.22523 0.96821 1.01711 0.94465 1.22527 0.99254 0.97877 0.96703 1.22379 0.98355 0.98127 0.97412 1.22270 0.98451 0.98505 0.96388 1.21184 0.97025 0.99225 0.90372 0.91088 0.92753 0.93988 0.96091 0.95964 0.78216 0.93499 0.91175 0.91168 0.76468 0.85558 0.85348 0.85717 0.89980 0.91119 0.91370 0.91437 0.91516 0.91667 0.91651 0.91483 0.91323 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.94 37.16 0.33 -1.76 16 2 C -0.11 -1.72 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.32 5.33 -59.91 -0.32 -18.64 16 6 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 7 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 10 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.13 1.78 5.06 -4.04 -0.02 1.76 16 15 N -0.72 -8.88 5.23 -61.25 -0.32 -9.20 16 16 C 0.55 7.62 7.77 -12.33 -0.10 7.53 16 17 O -0.54 -9.31 16.35 5.32 0.09 -9.22 16 18 C -0.13 -1.43 5.87 -104.97 -0.62 -2.05 16 19 C -0.09 -0.81 9.54 -39.19 -0.37 -1.18 16 20 C -0.12 -0.94 10.03 -39.64 -0.40 -1.33 16 21 C -0.09 -0.68 8.10 -39.49 -0.32 -1.00 16 22 C -0.08 -0.69 4.68 -104.68 -0.49 -1.18 16 23 C -0.05 -0.37 3.13 -90.66 -0.28 -0.65 16 24 C -0.12 -0.69 6.27 -25.03 -0.16 -0.85 16 25 C -0.13 -0.62 6.91 -24.69 -0.17 -0.79 16 26 C -0.13 -0.61 6.83 -25.07 -0.17 -0.79 16 27 C -0.12 -0.71 6.24 -25.61 -0.16 -0.87 16 28 C -0.06 -0.62 9.22 -39.19 -0.36 -0.98 16 29 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.38 9.98 6.85 -40.82 -0.28 9.71 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.40 4.01 5.69 -40.82 -0.23 3.77 16 39 H 0.13 0.90 6.41 -52.48 -0.34 0.57 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 41 H 0.12 0.70 7.77 -52.48 -0.41 0.29 16 42 H 0.08 0.57 7.90 -51.93 -0.41 0.16 16 43 H 0.07 0.42 6.90 -51.93 -0.36 0.06 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.44 7.28 -51.92 -0.38 0.06 16 51 H 0.13 1.47 7.55 -52.48 -0.40 1.07 16 LS Contribution 405.66 15.07 6.11 6.11 Total: -1.00 -32.65 405.66 -11.10 -43.75 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.59 Total: 7.42 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -3.78 Total: -10.30 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.08 Total: -55.22 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.65 -11.10 -43.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.846 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds