Wall clock time and date at job start Tue Mar 31 2020 16:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47256 * 2 1 4 4 C 1.53000 * 109.46980 * 119.99966 * 2 1 3 5 5 N 1.46501 * 109.47052 * 174.99665 * 4 2 1 6 6 C 1.36937 * 119.99786 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00054 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99744 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99886 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00124 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47022 * 90.00606 * 10 8 6 12 12 H 1.48504 * 109.47074 * 209.99985 * 10 8 6 13 13 H 1.48495 * 109.47224 * 330.00229 * 10 8 6 14 14 N 1.46499 * 109.47011 * 239.99904 * 2 1 3 15 15 C 1.46510 * 120.00076 * 299.99981 * 14 2 1 16 16 C 1.34771 * 120.00339 * 120.00408 * 14 2 1 17 17 O 1.21281 * 119.99886 * 359.97438 * 16 14 2 18 18 C 1.50698 * 120.00426 * 179.97438 * 16 14 2 19 19 C 1.52999 * 109.47278 * 179.97438 * 18 16 14 20 20 C 1.53787 * 113.61610 * 185.00089 * 19 18 16 21 21 C 1.53784 * 87.07923 * 270.88171 * 20 19 18 22 22 C 1.50699 * 113.61308 * 220.01868 * 21 20 19 23 23 C 1.38234 * 119.99931 * 59.72562 * 22 21 20 24 24 C 1.38238 * 119.99392 * 179.78936 * 23 22 21 25 25 C 1.38231 * 120.00506 * 0.44089 * 24 23 22 26 26 C 1.38233 * 119.99715 * 359.81091 * 25 24 23 27 27 C 1.38233 * 120.00150 * 359.97438 * 26 25 24 28 28 C 1.53779 * 87.08045 * 334.56667 * 21 20 19 29 29 H 1.09000 * 109.46981 * 300.00185 * 1 2 3 30 30 H 1.09002 * 109.46596 * 59.99774 * 1 2 3 31 31 H 1.08998 * 109.47256 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47307 * 294.99690 * 4 2 1 33 33 H 1.09006 * 109.46944 * 55.00093 * 4 2 1 34 34 H 0.96999 * 120.00033 * 0.02562 * 5 4 2 35 35 H 0.96998 * 119.99830 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47183 * 270.00315 * 15 14 2 37 37 H 1.08997 * 109.46528 * 30.00165 * 15 14 2 38 38 H 1.08997 * 109.46829 * 150.00387 * 15 14 2 39 39 H 1.08996 * 109.47299 * 59.99863 * 18 16 14 40 40 H 1.09004 * 109.46915 * 299.99429 * 18 16 14 41 41 H 1.08997 * 112.90642 * 316.24681 * 19 18 16 42 42 H 1.09004 * 113.61202 * 25.42923 * 20 19 18 43 43 H 1.08994 * 113.61447 * 156.33355 * 20 19 18 44 44 H 1.09002 * 113.61478 * 89.11632 * 21 20 19 45 45 H 1.07998 * 120.00175 * 359.97438 * 23 22 21 46 46 H 1.08003 * 119.99654 * 180.27849 * 24 23 22 47 47 H 1.07997 * 120.00034 * 179.83925 * 25 24 23 48 48 H 1.07997 * 120.00096 * 180.02562 * 26 25 24 49 49 H 1.07999 * 120.00270 * 179.97438 * 27 26 25 50 50 H 1.09006 * 113.61307 * 270.88660 * 28 21 20 51 51 H 1.08999 * 113.69146 * 139.99146 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8265 1.1906 6 6 4.1838 -1.4380 2.2072 7 1 3.6468 -1.8431 3.0521 8 6 5.5673 -1.5372 2.1519 9 7 6.2245 -2.1255 3.1288 10 14 6.4962 -0.8371 0.6902 11 1 6.8570 0.5770 0.9642 12 1 7.7323 -1.6285 0.4641 13 1 5.6378 -0.9035 -0.5197 14 7 2.0183 -0.6906 -1.1962 15 6 1.6644 -2.0933 -1.4280 16 6 2.7932 -0.0358 -2.0833 17 8 3.0859 1.1255 -1.8916 18 6 3.2960 -0.7463 -3.3135 19 6 4.1455 0.2155 -4.1467 20 6 4.6084 -0.3759 -5.4887 21 6 5.8440 -0.9032 -4.7403 22 6 7.1235 -0.7823 -5.5272 23 6 7.5631 0.4599 -5.9451 24 6 8.7391 0.5712 -6.6632 25 6 9.4707 -0.5605 -6.9712 26 6 9.0284 -1.8032 -6.5577 27 6 7.8547 -1.9141 -5.8358 28 6 5.6274 0.2417 -3.7368 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2951 34 1 3.9824 -0.4623 0.4319 35 1 7.1913 -2.1945 3.0903 36 1 2.4157 -2.7378 -0.9716 37 1 0.6904 -2.3002 -0.9846 38 1 1.6238 -2.2853 -2.5001 39 1 2.4485 -1.0893 -3.9069 40 1 3.9018 -1.6025 -3.0164 41 1 3.6997 1.2060 -4.2367 42 1 3.9572 -1.1643 -5.8662 43 1 4.8420 0.3778 -6.2405 44 1 5.7032 -1.8943 -4.3090 45 1 6.9894 1.3436 -5.7081 46 1 9.0849 1.5421 -6.9859 47 1 10.3881 -0.4737 -7.5344 48 1 9.6001 -2.6873 -6.7979 49 1 7.5089 -2.8850 -5.5131 50 1 6.1396 1.1644 -4.0099 51 1 5.7987 -0.0466 -2.6997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753699951.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:15 Heat of formation + Delta-G solvation = 19.637715 kcal Electronic energy + Delta-G solvation = -28882.040700 eV Core-core repulsion = 25168.153579 eV Total energy + Delta-G solvation = -3713.887122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.58355 -39.59243 -38.04818 -36.37906 -34.13846 -32.37694 -31.60904 -31.03323 -30.55792 -28.84907 -26.75011 -25.89441 -25.70889 -24.74210 -22.76785 -22.27256 -21.54702 -20.86386 -19.08559 -18.28336 -17.53876 -17.41743 -16.91369 -16.02755 -15.62295 -15.41967 -15.21275 -14.64964 -14.40457 -14.29619 -14.10671 -13.60922 -13.45098 -13.26894 -13.14961 -12.87442 -12.66790 -12.55550 -12.52131 -12.40373 -12.19523 -12.13902 -11.99063 -11.80285 -11.65600 -11.32003 -11.21993 -10.92409 -10.80957 -10.61980 -10.53936 -10.39292 -10.06748 -10.01353 -9.57679 -9.48323 -9.03936 -8.87921 -8.74006 -8.35632 -7.20155 -5.75374 -3.09893 1.23099 1.27991 2.89343 3.21455 3.39688 3.46420 3.50010 3.63405 4.41796 4.50088 4.57227 4.62183 4.73631 4.83957 4.87953 4.88621 4.92732 5.00621 5.12883 5.22502 5.29864 5.33941 5.37700 5.46347 5.47044 5.50184 5.53209 5.56402 5.65216 5.67056 5.70311 5.84607 5.87480 5.87846 5.91951 6.01273 6.03446 6.05224 6.12829 6.19644 6.23851 6.33661 6.38082 6.39828 6.41013 6.60343 6.64635 6.88746 6.89443 7.63895 8.01017 8.42804 8.45702 9.24074 9.96998 10.17711 11.42838 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.003748 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.681574 B = 7469.232751 C = 9256.196864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.121 3.879 3 H 0.100 0.900 4 C 0.149 3.851 5 N -0.752 5.752 6 C -0.242 4.242 7 H 0.090 0.910 8 C 0.006 3.994 9 N -0.934 5.934 10 Si 0.882 3.118 11 H -0.284 1.284 12 H -0.292 1.292 13 H -0.276 1.276 14 N -0.602 5.602 15 C 0.077 3.923 16 C 0.514 3.486 17 O -0.542 6.542 18 C -0.123 4.123 19 C -0.095 4.095 20 C -0.121 4.121 21 C -0.080 4.080 22 C -0.064 4.064 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.128 4.128 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.028 0.972 34 H 0.363 0.637 35 H 0.259 0.741 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.085 0.915 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 1.140 -22.172 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.018 3.982 3 H 0.118 0.882 4 C 0.021 3.979 5 N -0.397 5.397 6 C -0.372 4.372 7 H 0.107 0.893 8 C -0.190 4.190 9 N -0.582 5.582 10 Si 0.712 3.288 11 H -0.211 1.211 12 H -0.218 1.218 13 H -0.203 1.203 14 N -0.335 5.335 15 C -0.066 4.066 16 C 0.303 3.697 17 O -0.419 6.419 18 C -0.163 4.163 19 C -0.113 4.113 20 C -0.159 4.159 21 C -0.098 4.098 22 C -0.064 4.064 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.165 4.165 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.196 0.804 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.116 0.884 45 H 0.141 0.859 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.103 0.897 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.892 1.626 -21.841 22.441 hybrid contribution 0.913 0.220 -0.813 1.242 sum -3.979 1.846 -22.654 23.075 Atomic orbital electron populations 1.22046 0.94955 1.02133 1.02160 1.21438 0.93584 0.98494 0.84717 0.88224 1.20978 0.85745 0.97351 0.93874 1.42641 1.01298 1.71318 1.24483 1.19048 0.89845 1.29342 0.98964 0.89261 1.24633 0.96155 1.00620 0.97573 1.69703 1.07259 1.48706 1.32581 0.86600 0.79657 0.79032 0.83472 1.21092 1.21813 1.20254 1.47774 1.50744 1.12385 1.22594 1.21768 1.01675 0.82092 1.01051 1.20557 0.77739 0.86987 0.84466 1.90672 1.57319 1.17151 1.76763 1.21531 1.00590 0.99453 0.94718 1.22022 0.95370 0.99404 0.94551 1.23065 0.96227 1.00348 0.96218 1.21656 0.91607 1.00078 0.96466 1.19813 0.96057 0.93192 0.97315 1.21054 0.96682 0.97311 0.98450 1.21133 0.95279 0.98501 0.98842 1.21117 0.99965 0.92827 1.00852 1.21138 0.96541 0.97567 0.98520 1.21107 0.95262 0.98319 0.98899 1.23110 0.95792 0.97999 0.99595 0.91267 0.92629 0.92249 0.94649 0.95408 0.80359 0.93121 0.91681 0.90997 0.91638 0.88816 0.88725 0.89317 0.91202 0.89730 0.88448 0.85943 0.86237 0.86363 0.86230 0.86117 0.89662 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.17 37.16 0.34 -1.51 16 2 C 0.12 1.96 2.80 -67.93 -0.19 1.77 16 3 H 0.10 1.84 6.90 -51.93 -0.36 1.48 16 4 C 0.15 2.89 5.56 -4.04 -0.02 2.87 16 5 N -0.75 -18.47 5.24 -59.91 -0.31 -18.79 16 6 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 8 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 9 N -0.93 -29.91 13.97 55.49 0.78 -29.13 16 10 Si 0.88 23.38 27.73 -169.99 -4.71 18.66 16 11 H -0.28 -7.70 7.11 56.52 0.40 -7.30 16 12 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 13 H -0.28 -6.92 6.32 56.52 0.36 -6.56 16 14 N -0.60 -9.24 2.24 -173.93 -0.39 -9.63 16 15 C 0.08 0.93 9.40 59.85 0.56 1.49 16 16 C 0.51 8.46 7.38 -10.99 -0.08 8.38 16 17 O -0.54 -10.80 15.08 5.56 0.08 -10.72 16 18 C -0.12 -1.54 3.93 -27.88 -0.11 -1.65 16 19 C -0.09 -1.17 3.34 -89.81 -0.30 -1.47 16 20 C -0.12 -1.21 7.14 -25.91 -0.18 -1.39 16 21 C -0.08 -0.93 3.63 -90.96 -0.33 -1.26 16 22 C -0.06 -0.75 5.29 -104.62 -0.55 -1.31 16 23 C -0.12 -1.31 8.60 -39.58 -0.34 -1.65 16 24 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 25 C -0.13 -1.28 10.05 -39.59 -0.40 -1.68 16 26 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 27 C -0.12 -1.32 9.71 -39.58 -0.38 -1.71 16 28 C -0.13 -1.78 6.99 -25.92 -0.18 -1.96 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.03 0.53 7.84 -51.93 -0.41 0.12 16 34 H 0.36 9.13 4.93 -40.82 -0.20 8.93 16 35 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 38 H 0.06 0.59 6.44 -51.93 -0.33 0.26 16 39 H 0.09 0.89 7.40 -51.93 -0.38 0.50 16 40 H 0.09 1.20 7.35 -51.93 -0.38 0.81 16 41 H 0.09 1.18 7.68 -51.93 -0.40 0.78 16 42 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 43 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 44 H 0.10 1.12 7.67 -51.93 -0.40 0.72 16 45 H 0.12 1.25 6.68 -52.49 -0.35 0.90 16 46 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 48 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 50 H 0.08 1.12 6.32 -51.93 -0.33 0.80 16 51 H 0.07 1.26 7.90 -51.93 -0.41 0.85 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -35.02 401.03 -10.18 -45.20 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -8.44 Total: 9.77 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -3.22 Total: -11.41 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.07 Total: -57.55 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.71 Total: 18.66 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.02 -10.18 -45.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699951.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.838 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds