Wall clock time and date at job start Tue Mar 31 2020 15:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35894 * 117.00034 * 2 1 4 4 C 1.38762 * 120.17508 * 0.02562 * 3 2 1 5 5 C 1.37834 * 119.71031 * 179.85157 * 4 3 2 6 6 C 1.38963 * 120.62842 * 359.95621 * 5 4 3 7 7 C 1.37704 * 119.76527 * 0.30340 * 6 5 4 8 8 C 1.38423 * 120.17292 * 180.02562 * 3 2 1 9 9 C 1.50647 * 122.55812 * 179.59067 * 7 6 5 10 10 H 1.08998 * 109.25035 * 257.50054 * 9 7 6 11 11 N 1.46903 * 109.25016 * 138.04095 * 9 7 6 12 12 C 1.46898 * 110.99928 * 160.77303 * 11 9 7 13 13 C 1.53042 * 109.46185 * 227.24435 * 12 11 9 14 14 C 1.53196 * 109.31331 * 178.62710 * 13 12 11 15 15 N 1.46929 * 108.77482 * 54.63335 * 14 13 12 16 16 C 1.36935 * 120.62491 * 126.41259 * 15 14 13 17 17 H 1.08007 * 119.99254 * 212.15425 * 16 15 14 18 18 C 1.38806 * 120.00453 * 32.15923 * 16 15 14 19 19 N 1.31617 * 119.99920 * 15.94869 * 18 16 15 20 20 Si 1.86803 * 120.00098 * 195.95185 * 18 16 15 21 21 H 1.48498 * 109.46935 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47125 * 119.99663 * 20 18 16 23 23 H 1.48493 * 109.47155 * 239.99510 * 20 18 16 24 24 C 1.46924 * 118.73962 * 306.39395 * 15 14 13 25 25 C 1.53045 * 109.45150 * 107.18106 * 12 11 9 26 26 C 1.52728 * 110.59669 * 17.75622 * 9 7 6 27 27 C 1.53346 * 108.37760 * 308.89880 * 26 9 7 28 28 C 1.50653 * 117.69240 * 180.59478 * 6 5 4 29 29 H 1.09007 * 109.46809 * 59.99553 * 1 2 3 30 30 H 1.08996 * 109.47079 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46717 * 300.00029 * 1 2 3 32 32 H 1.08001 * 120.14597 * 359.88608 * 4 3 2 33 33 H 1.08004 * 119.68265 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.75226 * 0.08153 * 8 3 2 35 35 H 1.00902 * 111.00292 * 36.81952 * 11 9 7 36 36 H 1.09004 * 109.46268 * 347.21730 * 12 11 9 37 37 H 1.08999 * 109.49222 * 58.67791 * 13 12 11 38 38 H 1.09002 * 109.49539 * 298.57830 * 13 12 11 39 39 H 1.08997 * 109.58573 * 174.42316 * 14 13 12 40 40 H 1.09000 * 109.58381 * 294.84959 * 14 13 12 41 41 H 0.97004 * 119.99772 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.58380 * 293.82182 * 24 15 14 43 43 H 1.08996 * 109.70337 * 173.46308 * 24 15 14 44 44 H 1.08996 * 109.49306 * 301.33360 * 25 12 11 45 45 H 1.08999 * 109.49179 * 61.42808 * 25 12 11 46 46 H 1.08994 * 109.68317 * 68.60975 * 26 9 7 47 47 H 1.08993 * 109.67939 * 189.17089 * 26 9 7 48 48 H 1.09004 * 109.70415 * 310.17198 * 27 26 9 49 49 H 1.08999 * 109.67531 * 189.61457 * 27 26 9 50 50 H 1.09002 * 109.25245 * 317.79800 * 28 6 5 51 51 H 1.08997 * 109.25108 * 77.22218 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2938 2.3769 0.0005 5 6 1.9295 3.5999 0.0036 6 6 3.3170 3.6766 0.0071 7 6 4.0656 2.5208 0.0012 8 6 3.4281 1.2874 -0.0005 9 6 5.5720 2.5305 -0.0045 10 1 5.9290 2.3128 -1.0112 11 7 6.0666 1.4999 0.9181 12 6 7.4638 1.1557 0.6228 13 6 7.6173 -0.3666 0.5872 14 6 9.0678 -0.7217 0.2452 15 7 9.9575 -0.0476 1.2007 16 6 10.8870 -0.7600 1.9105 17 1 11.1593 -0.4486 2.9082 18 6 11.4793 -1.8821 1.3477 19 7 11.3990 -2.0878 0.0502 20 14 12.3904 -3.1003 2.4319 21 1 12.3367 -2.6430 3.8437 22 1 11.7525 -4.4366 2.3193 23 1 13.8066 -3.1895 1.9944 24 6 9.8312 1.4052 1.3798 25 6 8.3722 1.7364 1.7090 26 6 6.1021 3.8944 0.4330 27 6 5.4066 4.9747 -0.4040 28 6 3.9424 5.0470 0.0242 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8899 32 1 0.2150 2.3264 -0.0009 33 1 1.3436 4.5072 0.0036 34 1 4.0151 0.3809 -0.0023 35 1 5.4791 0.6799 0.8929 36 1 7.7436 1.5717 -0.3451 37 1 6.9529 -0.7815 -0.1707 38 1 7.3615 -0.7809 1.5624 39 1 9.2062 -1.8005 0.3155 40 1 9.2972 -0.3868 -0.7664 41 1 11.8126 -2.8722 -0.3430 42 1 10.1228 1.9133 0.4607 43 1 10.4735 1.7319 2.1976 44 1 8.2449 2.8182 1.7496 45 1 8.1093 1.3022 2.6736 46 1 5.8839 4.0514 1.4893 47 1 7.1788 3.9395 0.2694 48 1 5.4675 4.7165 -1.4612 49 1 5.8872 5.9379 -0.2326 50 1 3.3994 5.6985 -0.6605 51 1 3.8827 5.4568 1.0325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813806.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:32 Heat of formation + Delta-G solvation = -0.015353 kcal Electronic energy + Delta-G solvation = -28878.989507 eV Core-core repulsion = 25164.250164 eV Total energy + Delta-G solvation = -3714.739343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.70964 -39.03756 -37.72515 -35.69865 -34.58053 -32.65725 -31.11794 -30.04311 -29.79524 -29.28644 -27.93853 -26.85416 -24.65756 -23.40648 -22.66169 -22.05179 -21.88208 -20.92732 -19.63848 -19.07496 -17.89050 -16.70263 -16.51551 -16.07515 -15.90710 -15.24850 -14.93173 -14.73611 -14.63836 -14.23343 -13.79133 -13.75018 -13.49344 -13.45210 -13.11782 -12.95530 -12.88271 -12.61512 -12.44645 -12.15281 -12.07384 -11.91095 -11.38120 -11.25762 -11.13811 -10.99277 -10.84961 -10.75965 -10.70078 -10.57251 -10.38602 -10.30064 -10.06409 -9.95606 -9.58406 -9.38847 -8.99171 -8.44751 -8.21043 -8.00663 -6.55995 -5.75131 -3.20605 1.16891 1.28400 3.07223 3.39631 3.47544 3.50314 3.55361 4.35351 4.49678 4.53614 4.54556 4.68860 4.81049 4.87053 4.95034 4.97907 5.07301 5.11307 5.19000 5.34389 5.40807 5.41056 5.47716 5.49854 5.53531 5.62322 5.74396 5.77385 5.81606 5.85972 5.92522 6.00057 6.08997 6.18473 6.23085 6.25934 6.32809 6.40957 6.53608 6.53670 6.63984 6.66275 6.70247 6.72329 6.91669 7.11899 7.22863 7.38083 7.43975 7.62577 7.70951 7.85739 8.52502 9.26571 9.89355 10.49106 11.33448 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.002809 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.760787 B = 9964.496985 C =11356.665093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.125 3.875 4 C -0.209 4.209 5 C -0.083 4.083 6 C -0.106 4.106 7 C -0.026 4.026 8 C -0.149 4.149 9 C 0.128 3.872 10 H 0.054 0.946 11 N -0.683 5.683 12 C 0.096 3.904 13 C -0.152 4.152 14 C 0.179 3.821 15 N -0.591 5.591 16 C -0.252 4.252 17 H 0.063 0.937 18 C 0.004 3.996 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.144 3.856 25 C -0.115 4.115 26 C -0.107 4.107 27 C -0.121 4.121 28 C -0.074 4.074 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.339 0.661 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.017 0.983 41 H 0.252 0.748 42 H 0.014 0.986 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.251 12.344 -2.251 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.080 3.920 4 C -0.228 4.228 5 C -0.101 4.101 6 C -0.107 4.107 7 C -0.027 4.027 8 C -0.168 4.168 9 C 0.019 3.981 10 H 0.071 0.929 11 N -0.317 5.317 12 C -0.013 4.013 13 C -0.192 4.192 14 C 0.052 3.948 15 N -0.314 5.314 16 C -0.382 4.382 17 H 0.081 0.919 18 C -0.194 4.194 19 N -0.546 5.546 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.017 3.983 25 C -0.155 4.155 26 C -0.145 4.145 27 C -0.159 4.159 28 C -0.111 4.111 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.035 0.965 41 H 0.062 0.938 42 H 0.031 0.969 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.920 12.445 -1.842 25.274 hybrid contribution -0.059 -1.222 -0.373 1.279 sum -21.979 11.224 -2.215 24.778 Atomic orbital electron populations 1.23030 0.78582 1.03867 1.01158 1.86092 1.21200 1.26950 1.88818 1.18850 0.92194 0.84130 0.96866 1.21114 0.99764 0.92404 1.09468 1.20905 0.93835 0.96984 0.98369 1.19504 0.92950 0.94815 1.03412 1.19459 0.95163 0.91510 0.96567 1.20355 0.91415 0.98352 1.06692 1.20416 0.88875 0.94118 0.94735 0.92891 1.60832 1.03947 1.14007 1.52871 1.21560 0.86559 0.95712 0.97451 1.22607 1.01328 0.94321 1.00950 1.20625 0.84163 0.98778 0.91217 1.43998 1.38382 1.00854 1.48128 1.19190 1.15696 1.07838 0.95477 0.91895 1.25143 0.98177 1.00972 0.95151 1.70042 1.47344 1.28218 1.08991 0.86256 0.79163 0.81357 0.80208 1.20180 1.21583 1.21735 1.20953 0.93127 0.86351 0.97866 1.22043 0.96172 0.98669 0.98568 1.21604 0.99977 0.92332 1.00595 1.21576 0.94802 0.99360 1.00142 1.20405 0.95871 0.93006 1.01833 0.92821 0.88297 0.92741 0.85681 0.85984 0.85332 0.83933 0.93417 0.93750 0.91943 0.90206 0.96477 0.93756 0.96859 0.92817 0.93109 0.92112 0.90649 0.91108 0.91811 0.91244 0.91223 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.82 101.05 0.99 1.20 16 2 O -0.32 -3.67 10.50 -19.41 -0.20 -3.87 16 3 C 0.12 1.50 6.68 -39.32 -0.26 1.24 16 4 C -0.21 -2.12 9.04 -39.54 -0.36 -2.47 16 5 C -0.08 -0.82 9.60 -39.46 -0.38 -1.20 16 6 C -0.11 -1.17 5.74 -104.57 -0.60 -1.77 16 7 C -0.03 -0.33 5.55 -104.62 -0.58 -0.91 16 8 C -0.15 -1.93 8.89 -39.29 -0.35 -2.28 16 9 C 0.13 1.68 2.41 -69.03 -0.17 1.52 16 10 H 0.05 0.74 7.56 -51.93 -0.39 0.34 16 11 N -0.68 -10.20 6.19 -101.08 -0.63 -10.83 16 12 C 0.10 1.65 2.24 -67.67 -0.15 1.50 16 13 C -0.15 -2.94 5.18 -26.61 -0.14 -3.08 16 14 C 0.18 4.31 5.27 -3.71 -0.02 4.29 16 15 N -0.59 -15.08 2.97 -172.32 -0.51 -15.59 16 16 C -0.25 -7.05 9.54 -15.06 -0.14 -7.19 16 17 H 0.06 1.74 7.88 -52.48 -0.41 1.33 16 18 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 19 N -0.90 -26.55 11.44 55.49 0.64 -25.92 16 20 Si 0.90 21.97 29.58 -169.99 -5.03 16.95 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 C 0.14 3.10 6.51 -3.71 -0.02 3.08 16 25 C -0.11 -2.09 5.66 -26.61 -0.15 -2.24 16 26 C -0.11 -1.27 4.84 -26.69 -0.13 -1.40 16 27 C -0.12 -1.15 5.98 -26.70 -0.16 -1.31 16 28 C -0.07 -0.67 5.67 -28.05 -0.16 -0.83 16 29 H 0.05 0.32 7.67 -51.93 -0.40 -0.08 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 32 H 0.13 0.96 6.33 -52.49 -0.33 0.63 16 33 H 0.12 0.90 8.05 -52.48 -0.42 0.48 16 34 H 0.13 1.68 6.43 -52.49 -0.34 1.35 16 35 H 0.34 5.01 5.52 -39.29 -0.22 4.79 16 36 H 0.05 0.85 7.27 -51.93 -0.38 0.47 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 2.15 6.35 -51.93 -0.33 1.82 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 44 H 0.05 0.83 6.84 -51.93 -0.36 0.47 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 47 H 0.07 0.88 7.19 -51.93 -0.37 0.51 16 48 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -30.83 386.00 -11.32 -42.15 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.54 Total: 3.11 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -2.86 Total: -11.81 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.50 Total: -52.33 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.20 Total: -3.87 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.83 -11.32 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813806.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.136 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds