Wall clock time and date at job start Tue Mar 31 2020 15:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35894 * 117.00034 * 2 1 4 4 C 1.38762 * 120.17508 * 0.02562 * 3 2 1 5 5 C 1.37834 * 119.71031 * 179.85157 * 4 3 2 6 6 C 1.38963 * 120.62842 * 359.95621 * 5 4 3 7 7 C 1.37704 * 119.76527 * 0.30340 * 6 5 4 8 8 C 1.38423 * 120.17292 * 180.02562 * 3 2 1 9 9 C 1.50647 * 122.55812 * 179.59067 * 7 6 5 10 10 H 1.08998 * 109.25035 * 257.50054 * 9 7 6 11 11 N 1.46903 * 109.25016 * 138.04095 * 9 7 6 12 12 C 1.46898 * 110.99928 * 160.77303 * 11 9 7 13 13 C 1.53042 * 109.46185 * 227.24435 * 12 11 9 14 14 C 1.53196 * 109.31331 * 178.62710 * 13 12 11 15 15 N 1.46929 * 108.77482 * 54.63335 * 14 13 12 16 16 C 1.36935 * 120.62491 * 126.41259 * 15 14 13 17 17 H 1.08007 * 119.99254 * 212.15425 * 16 15 14 18 18 C 1.38806 * 120.00453 * 32.15923 * 16 15 14 19 19 N 1.31617 * 119.99920 * 15.94869 * 18 16 15 20 20 Si 1.86803 * 120.00098 * 195.95185 * 18 16 15 21 21 H 1.48498 * 109.46935 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47125 * 119.99663 * 20 18 16 23 23 H 1.48493 * 109.47155 * 239.99510 * 20 18 16 24 24 C 1.46924 * 118.73962 * 306.39395 * 15 14 13 25 25 C 1.53045 * 109.45150 * 107.18106 * 12 11 9 26 26 C 1.52728 * 110.59669 * 17.75622 * 9 7 6 27 27 C 1.53346 * 108.37760 * 308.89880 * 26 9 7 28 28 C 1.50653 * 117.69240 * 180.59478 * 6 5 4 29 29 H 1.09007 * 109.46809 * 59.99553 * 1 2 3 30 30 H 1.08996 * 109.47079 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46717 * 300.00029 * 1 2 3 32 32 H 1.08001 * 120.14597 * 359.88608 * 4 3 2 33 33 H 1.08004 * 119.68265 * 179.97438 * 5 4 3 34 34 H 1.07996 * 119.75226 * 0.08153 * 8 3 2 35 35 H 1.00902 * 111.00292 * 36.81952 * 11 9 7 36 36 H 1.09004 * 109.46268 * 347.21730 * 12 11 9 37 37 H 1.08999 * 109.49222 * 58.67791 * 13 12 11 38 38 H 1.09002 * 109.49539 * 298.57830 * 13 12 11 39 39 H 1.08997 * 109.58573 * 174.42316 * 14 13 12 40 40 H 1.09000 * 109.58381 * 294.84959 * 14 13 12 41 41 H 0.97004 * 119.99772 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.58380 * 293.82182 * 24 15 14 43 43 H 1.08996 * 109.70337 * 173.46308 * 24 15 14 44 44 H 1.08996 * 109.49306 * 301.33360 * 25 12 11 45 45 H 1.08999 * 109.49179 * 61.42808 * 25 12 11 46 46 H 1.08994 * 109.68317 * 68.60975 * 26 9 7 47 47 H 1.08993 * 109.67939 * 189.17089 * 26 9 7 48 48 H 1.09004 * 109.70415 * 310.17198 * 27 26 9 49 49 H 1.08999 * 109.67531 * 189.61457 * 27 26 9 50 50 H 1.09002 * 109.25245 * 317.79800 * 28 6 5 51 51 H 1.08997 * 109.25108 * 77.22218 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2938 2.3769 0.0005 5 6 1.9295 3.5999 0.0036 6 6 3.3170 3.6766 0.0071 7 6 4.0656 2.5208 0.0012 8 6 3.4281 1.2874 -0.0005 9 6 5.5720 2.5305 -0.0045 10 1 5.9290 2.3128 -1.0112 11 7 6.0666 1.4999 0.9181 12 6 7.4638 1.1557 0.6228 13 6 7.6173 -0.3666 0.5872 14 6 9.0678 -0.7217 0.2452 15 7 9.9575 -0.0476 1.2007 16 6 10.8870 -0.7600 1.9105 17 1 11.1593 -0.4486 2.9082 18 6 11.4793 -1.8821 1.3477 19 7 11.3990 -2.0878 0.0502 20 14 12.3904 -3.1003 2.4319 21 1 12.3367 -2.6430 3.8437 22 1 11.7525 -4.4366 2.3193 23 1 13.8066 -3.1895 1.9944 24 6 9.8312 1.4052 1.3798 25 6 8.3722 1.7364 1.7090 26 6 6.1021 3.8944 0.4330 27 6 5.4066 4.9747 -0.4040 28 6 3.9424 5.0470 0.0242 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8899 32 1 0.2150 2.3264 -0.0009 33 1 1.3436 4.5072 0.0036 34 1 4.0151 0.3809 -0.0023 35 1 5.4791 0.6799 0.8929 36 1 7.7436 1.5717 -0.3451 37 1 6.9529 -0.7815 -0.1707 38 1 7.3615 -0.7809 1.5624 39 1 9.2062 -1.8005 0.3155 40 1 9.2972 -0.3868 -0.7664 41 1 11.8126 -2.8722 -0.3430 42 1 10.1228 1.9133 0.4607 43 1 10.4735 1.7319 2.1976 44 1 8.2449 2.8182 1.7496 45 1 8.1093 1.3022 2.6736 46 1 5.8839 4.0514 1.4893 47 1 7.1788 3.9395 0.2694 48 1 5.4675 4.7165 -1.4612 49 1 5.8872 5.9379 -0.2326 50 1 3.3994 5.6985 -0.6605 51 1 3.8827 5.4568 1.0325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813806.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:31 Heat of formation + Delta-G solvation = -17.313431 kcal Electronic energy + Delta-G solvation = -28879.739608 eV Core-core repulsion = 25164.250164 eV Total energy + Delta-G solvation = -3715.489444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.55775 -40.03756 -39.11759 -36.91413 -35.68201 -34.25848 -32.59950 -31.61073 -30.71424 -30.62080 -29.02038 -27.62313 -26.49237 -24.34195 -23.93847 -23.47223 -23.10070 -22.19327 -20.93479 -20.25456 -18.97094 -18.49889 -17.32078 -17.01217 -16.83463 -16.63287 -16.33500 -15.91506 -15.70745 -15.52987 -15.34358 -15.03360 -14.72612 -14.55384 -14.48520 -14.05260 -14.03093 -13.81529 -13.61233 -13.20302 -13.09526 -12.95624 -12.93685 -12.76978 -12.63547 -12.39221 -12.24586 -12.00619 -11.97652 -11.92452 -11.79570 -11.53670 -11.52499 -11.30332 -11.27757 -10.99482 -10.57839 -9.91741 -9.31197 -8.95028 -8.64261 -7.89031 -5.38437 0.33077 0.46057 1.44850 1.46535 1.57752 2.37953 2.50143 2.70768 3.15596 3.29061 3.62520 3.68834 3.78435 3.94073 3.97769 4.07092 4.13302 4.21035 4.24189 4.28802 4.37543 4.39275 4.42290 4.45441 4.54791 4.57966 4.69139 4.70317 4.71340 4.76102 4.83109 4.94903 4.98635 4.99870 5.07519 5.07865 5.12543 5.16066 5.24719 5.31200 5.37686 5.37929 5.47269 5.48448 5.49936 5.64984 5.68059 5.72350 5.83834 6.16601 6.40115 6.43198 6.47890 7.14306 7.84203 8.39002 9.17427 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.002809 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.760787 B = 9964.496985 C =11356.665093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.110 3.890 4 C -0.206 4.206 5 C -0.081 4.081 6 C -0.113 4.113 7 C -0.043 4.043 8 C -0.173 4.173 9 C 0.129 3.871 10 H 0.042 0.958 11 N -0.680 5.680 12 C 0.109 3.891 13 C -0.138 4.138 14 C 0.187 3.813 15 N -0.609 5.609 16 C -0.265 4.265 17 H 0.063 0.937 18 C -0.048 4.048 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.266 1.266 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.141 3.859 25 C -0.100 4.100 26 C -0.105 4.105 27 C -0.117 4.117 28 C -0.072 4.072 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.114 0.886 35 H 0.340 0.660 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.046 0.954 40 H -0.004 1.004 41 H 0.250 0.750 42 H 0.012 0.988 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.572 14.375 -1.630 28.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.065 3.935 4 C -0.224 4.224 5 C -0.098 4.098 6 C -0.113 4.113 7 C -0.043 4.043 8 C -0.192 4.192 9 C 0.020 3.980 10 H 0.060 0.940 11 N -0.313 5.313 12 C -0.001 4.001 13 C -0.178 4.178 14 C 0.060 3.940 15 N -0.333 5.333 16 C -0.396 4.396 17 H 0.081 0.919 18 C -0.243 4.243 19 N -0.580 5.580 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.015 3.985 25 C -0.139 4.139 26 C -0.143 4.143 27 C -0.155 4.155 28 C -0.109 4.109 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.084 0.916 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.132 0.868 35 H 0.162 0.838 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.014 0.986 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.105 0.895 50 H 0.110 0.890 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.267 14.503 -1.210 28.296 hybrid contribution 0.584 -1.832 -0.594 2.013 sum -23.683 12.671 -1.804 26.920 Atomic orbital electron populations 1.23321 0.76427 1.05385 1.02324 1.86057 1.23552 1.27164 1.88871 1.19017 0.92116 0.85081 0.97237 1.21445 1.01076 0.91781 1.08116 1.21286 0.93570 0.98080 0.96914 1.19816 0.93684 0.95146 1.02700 1.19437 0.94577 0.92180 0.98138 1.20392 0.92275 0.98163 1.08359 1.20443 0.89814 0.94045 0.93675 0.93990 1.60803 1.02537 1.14459 1.53456 1.21308 0.88093 0.93733 0.96939 1.22389 0.98215 0.96273 1.00903 1.20408 0.86812 0.96618 0.90120 1.44267 1.38449 1.02534 1.48045 1.19497 1.15889 1.08413 0.95755 0.91942 1.25914 0.99439 1.02665 0.96329 1.70187 1.48564 1.28625 1.10591 0.85217 0.77612 0.78756 0.78927 1.19050 1.21610 1.21669 1.21088 0.95473 0.84175 0.97761 1.21853 0.93861 1.00158 0.98044 1.21578 0.99646 0.92360 1.00697 1.21562 0.95298 0.99170 0.99423 1.20458 0.95330 0.92139 1.02927 0.91498 0.86809 0.91583 0.83077 0.82846 0.86765 0.83849 0.93809 0.92069 0.92657 0.93595 0.98569 0.94085 0.97028 0.92772 0.90572 0.93176 0.91199 0.91995 0.92084 0.89460 0.88955 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.82 113.37 1.11 1.36 16 2 O -0.34 -7.72 10.50 -92.36 -0.97 -8.69 16 3 C 0.11 2.57 6.68 22.44 0.15 2.72 16 4 C -0.21 -3.64 9.04 22.30 0.20 -3.44 16 5 C -0.08 -1.33 9.60 22.35 0.21 -1.11 16 6 C -0.11 -2.22 5.74 -19.83 -0.11 -2.33 16 7 C -0.04 -1.04 5.55 -19.86 -0.11 -1.15 16 8 C -0.17 -4.50 8.89 22.46 0.20 -4.30 16 9 C 0.13 3.34 2.41 44.06 0.11 3.45 16 10 H 0.04 1.18 7.56 -2.39 -0.02 1.16 16 11 N -0.68 -20.19 6.19 -473.71 -2.93 -23.12 16 12 C 0.11 3.76 2.24 44.95 0.10 3.86 16 13 C -0.14 -5.46 5.18 30.67 0.16 -5.31 16 14 C 0.19 9.39 5.27 86.36 0.46 9.85 16 15 N -0.61 -31.93 2.97 -699.11 -2.08 -34.00 16 16 C -0.27 -15.13 9.54 84.03 0.80 -14.33 16 17 H 0.06 3.50 7.88 -2.91 -0.02 3.47 16 18 C -0.05 -2.74 4.91 84.86 0.42 -2.33 16 19 N -0.93 -56.74 11.44 21.65 0.25 -56.49 16 20 Si 0.97 45.98 29.58 68.60 2.03 48.01 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 24 C 0.14 6.13 6.51 86.36 0.56 6.69 16 25 C -0.10 -3.58 5.66 30.67 0.17 -3.41 16 26 C -0.10 -2.34 4.84 30.62 0.15 -2.19 16 27 C -0.12 -1.93 5.98 30.62 0.18 -1.75 16 28 C -0.07 -1.05 5.67 29.74 0.17 -0.89 16 29 H 0.07 0.64 7.67 -2.38 -0.02 0.62 16 30 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 0.65 7.67 -2.39 -0.02 0.63 16 32 H 0.15 1.78 6.33 -2.91 -0.02 1.76 16 33 H 0.15 1.53 8.05 -2.91 -0.02 1.50 16 34 H 0.11 3.15 6.43 -2.91 -0.02 3.13 16 35 H 0.34 10.17 5.52 -89.69 -0.50 9.68 16 36 H 0.04 1.57 7.27 -2.38 -0.02 1.55 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 2.59 6.35 -2.39 -0.02 2.58 16 40 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 43 H 0.05 2.31 7.94 -2.39 -0.02 2.29 16 44 H 0.08 2.37 6.84 -2.39 -0.02 2.35 16 45 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 47 H 0.06 1.47 7.19 -2.39 -0.02 1.45 16 48 H 0.06 1.05 8.10 -2.38 -0.02 1.04 16 49 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.09 0.97 8.12 -2.39 -0.02 0.95 16 51 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -68.36 386.00 1.65 -66.71 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.42 Total: 22.19 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 4.93 Total: -14.61 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -4.76 Total: -113.62 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.97 Total: -8.69 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -68.36 1.65 -66.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813806.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.399 kcal (2) G-P(sol) polarization free energy of solvation -68.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds