Wall clock time and date at job start Tue Mar 31 2020 16:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99592 * 2 1 4 4 H 1.48505 * 109.47157 * 269.99685 * 3 2 1 5 5 H 1.48498 * 109.47290 * 29.99960 * 3 2 1 6 6 H 1.48502 * 109.47297 * 149.99997 * 3 2 1 7 7 C 1.37876 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99824 * 0.02562 * 7 2 1 10 10 H 1.08991 * 109.50231 * 299.91766 * 9 7 2 11 11 C 1.53113 * 109.50273 * 59.99856 * 9 7 2 12 12 C 1.53125 * 109.15876 * 177.59524 * 11 9 7 13 13 C 1.53032 * 109.27669 * 302.34164 * 12 11 9 14 14 N 1.46852 * 109.52271 * 59.17985 * 13 12 11 15 15 C 1.38991 * 110.99913 * 174.15890 * 14 13 12 16 16 C 1.39003 * 119.66318 * 56.04803 * 15 14 13 17 17 C 1.38503 * 119.26423 * 180.02562 * 16 15 14 18 18 C 1.38555 * 118.58748 * 359.97438 * 17 16 15 19 19 C 1.38961 * 119.26261 * 359.97438 * 18 17 16 20 20 N 1.38995 * 119.66100 * 179.97438 * 19 18 17 21 21 C 1.46849 * 111.00074 * 55.78760 * 20 19 18 22 22 C 1.53035 * 109.52332 * 185.83931 * 21 20 19 23 23 C 1.53119 * 109.28021 * 300.82367 * 22 21 20 24 24 N 1.46900 * 109.52237 * 177.55842 * 23 22 21 25 25 C 1.53125 * 109.15915 * 57.65569 * 23 22 21 26 26 C 1.46842 * 111.00184 * 180.02562 * 20 19 18 27 27 N 1.32474 * 119.66056 * 236.07155 * 15 14 13 28 28 C 1.46844 * 111.19668 * 298.25437 * 14 13 12 29 29 H 0.96993 * 120.00321 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.52928 * 57.69062 * 11 9 7 31 31 H 1.09002 * 109.57747 * 297.52862 * 11 9 7 32 32 H 1.09006 * 109.49988 * 182.40248 * 12 11 9 33 33 H 1.08994 * 109.50090 * 62.28620 * 12 11 9 34 34 H 1.09000 * 109.46839 * 299.16513 * 13 12 11 35 35 H 1.09000 * 109.45501 * 179.19024 * 13 12 11 36 36 H 1.08000 * 120.36747 * 359.97096 * 16 15 14 37 37 H 1.07998 * 120.71036 * 179.97438 * 17 16 15 38 38 H 1.07999 * 120.37022 * 179.73073 * 18 17 16 39 39 H 1.09000 * 109.46358 * 305.86044 * 21 20 19 40 40 H 1.09003 * 109.45543 * 65.82467 * 21 20 19 41 41 H 1.09000 * 109.50013 * 180.88476 * 22 21 20 42 42 H 1.09000 * 109.53301 * 60.78879 * 22 21 20 43 43 H 1.09005 * 109.57559 * 297.72186 * 23 22 21 44 44 H 1.00897 * 110.99773 * 60.31879 * 24 23 22 45 45 H 1.00896 * 111.00136 * 184.26863 * 24 23 22 46 46 H 1.08999 * 109.49922 * 182.40399 * 25 23 22 47 47 H 1.08999 * 109.53201 * 62.30531 * 25 23 22 48 48 H 1.08999 * 109.46411 * 294.17538 * 26 20 19 49 49 H 1.09003 * 109.46314 * 54.15286 * 26 20 19 50 50 H 1.09003 * 109.45970 * 181.75671 * 28 14 13 51 51 H 1.08996 * 109.46511 * 301.72418 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6251 -2.5579 0.8908 11 6 0.3710 -2.5813 -1.2497 12 6 -0.3446 -3.9348 -1.2724 13 6 0.6955 -5.0569 -1.2400 14 7 1.5114 -4.9347 -0.0251 15 6 2.3795 -6.0127 0.1024 16 6 3.2662 -6.3073 -0.9268 17 6 4.1272 -7.3837 -0.7913 18 6 4.0739 -8.1328 0.3731 19 6 3.1645 -7.7840 1.3642 20 7 3.1037 -8.5301 2.5354 21 6 4.4174 -8.5922 3.1886 22 6 4.3468 -9.5371 4.3904 23 6 3.2904 -9.0260 5.3740 24 7 3.1768 -9.9605 6.5017 25 6 1.9420 -8.9247 4.6555 26 6 2.0820 -7.9979 3.4459 27 7 2.3531 -6.7490 1.2033 28 6 2.2451 -3.6628 -0.0039 29 1 -0.4850 0.8400 -0.0004 30 1 0.9924 -2.4829 -2.1398 31 1 -0.3670 -1.7794 -1.2302 32 1 -0.9398 -4.0165 -2.1820 33 1 -0.9957 -4.0168 -0.4022 34 1 1.3376 -4.9825 -2.1176 35 1 0.1887 -6.0219 -1.2415 36 1 3.2829 -5.7041 -1.8225 37 1 4.8253 -7.6338 -1.5764 38 1 4.7291 -8.9808 0.5072 39 1 5.1585 -8.9611 2.4796 40 1 4.7024 -7.5958 3.5263 41 1 5.3179 -9.5708 4.8843 42 1 4.0756 -10.5372 4.0522 43 1 3.5810 -8.0426 5.7436 44 1 4.0548 -10.0442 6.9918 45 1 2.4376 -9.6817 7.1293 46 1 1.1950 -8.5209 5.3390 47 1 1.6320 -9.9147 4.3211 48 1 2.3775 -7.0042 3.7825 49 1 1.1272 -7.9353 2.9238 50 1 2.8638 -3.6154 0.8922 51 1 2.8799 -3.5950 -0.8873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:41 Heat of formation + Delta-G solvation = 52.854407 kcal Electronic energy + Delta-G solvation = -28867.516560 eV Core-core repulsion = 25187.362573 eV Total energy + Delta-G solvation = -3680.153987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.212 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84089 -39.26201 -37.69005 -35.31612 -33.70462 -32.47339 -31.79157 -31.08946 -30.21668 -29.91440 -28.00690 -24.99187 -24.44720 -23.94567 -23.25997 -21.93248 -21.58120 -21.02292 -19.89594 -18.63885 -17.64547 -16.71727 -16.16600 -15.89360 -15.71057 -15.57691 -15.35095 -15.00371 -14.63258 -14.54426 -14.18133 -13.90988 -13.56917 -13.29601 -13.04728 -12.98747 -12.64253 -12.57530 -12.45949 -12.17016 -11.91073 -11.73621 -11.67775 -11.36717 -11.06245 -10.96763 -10.79062 -10.72330 -10.61278 -10.15975 -10.01883 -9.86259 -9.67641 -9.49189 -9.40803 -9.09980 -9.02718 -8.74672 -8.33199 -7.99845 -7.80562 -5.99380 -4.05858 1.20548 1.43161 3.29457 3.33232 3.36611 3.39740 3.86264 3.98426 4.12838 4.43345 4.49795 4.57911 4.81882 4.94801 5.01671 5.13573 5.16249 5.20466 5.26405 5.30207 5.34239 5.39193 5.43711 5.48750 5.58536 5.67571 5.71609 5.72780 5.92100 5.95632 5.99710 6.05087 6.13693 6.16454 6.25453 6.30912 6.41143 6.46946 6.62952 6.68543 6.73675 6.82077 6.90651 7.09805 7.12757 7.16292 7.38009 7.51929 7.71068 7.74820 8.05372 8.14037 8.37801 8.43717 8.97579 9.58449 11.06660 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.002845 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.328312 B = 9837.936646 C =10585.118195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.037 0.963 11 C -0.112 4.112 12 C -0.117 4.117 13 C 0.074 3.926 14 N -0.504 5.504 15 C 0.353 3.647 16 C -0.229 4.229 17 C -0.046 4.046 18 C -0.204 4.204 19 C 0.319 3.681 20 N -0.474 5.474 21 C 0.061 3.939 22 C -0.108 4.108 23 C 0.086 3.914 24 N -0.847 5.847 25 C -0.113 4.113 26 C 0.068 3.932 27 N -0.503 5.503 28 C 0.082 3.918 29 H 0.260 0.740 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.059 0.941 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.034 0.966 44 H 0.339 0.661 45 H 0.342 0.658 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.050 0.950 49 H 0.092 0.908 50 H 0.059 0.941 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.628 -19.198 5.046 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.055 0.945 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.052 4.052 14 N -0.227 5.227 15 C 0.122 3.878 16 C -0.253 4.253 17 C -0.073 4.073 18 C -0.227 4.227 19 C 0.086 3.914 20 N -0.192 5.192 21 C -0.066 4.066 22 C -0.146 4.146 23 C -0.025 4.025 24 N -0.376 5.376 25 C -0.152 4.152 26 C -0.059 4.059 27 N -0.218 5.218 28 C -0.043 4.043 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.052 0.948 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.087 0.913 47 H 0.097 0.903 48 H 0.069 0.931 49 H 0.111 0.889 50 H 0.077 0.923 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.252 -19.903 5.519 21.580 hybrid contribution 1.995 2.223 -0.612 3.049 sum 8.247 -17.680 4.908 20.117 Atomic orbital electron populations 1.69883 1.05824 1.26398 1.50461 1.24918 0.94831 0.98930 0.95058 0.86621 0.79887 0.83593 0.78038 1.20741 1.21212 1.19987 1.21099 0.92805 0.90516 1.50993 0.92838 1.18681 0.92529 0.89896 0.95147 0.94485 1.21679 1.00122 0.94745 0.98411 1.21694 0.97025 0.96093 1.00650 1.22078 0.95183 0.99386 0.88599 1.58765 1.23512 1.00660 1.39767 1.19542 0.89578 0.90850 0.87807 1.22532 0.99731 1.00854 1.02214 1.21270 0.96460 0.93151 0.96403 1.21428 1.02997 1.03242 0.95026 1.19604 0.91269 0.88274 0.92242 1.59167 1.07675 1.47660 1.04716 1.22233 0.88866 0.99325 0.96177 1.21606 0.98409 1.00229 0.94400 1.21431 0.96282 0.93227 0.91561 1.58720 1.10830 1.54037 1.14026 1.21697 0.96136 1.01175 0.96146 1.21947 0.95946 0.96044 0.91957 1.67223 1.24958 1.04655 1.24955 1.22372 0.96324 0.86462 0.99134 0.92990 0.94963 0.88837 0.92997 0.91772 0.95033 0.92208 0.85110 0.85045 0.85038 0.89633 0.93719 0.91300 0.89912 0.94779 0.84838 0.84557 0.91260 0.90258 0.93125 0.88932 0.92250 0.95524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 11.35 55.43 0.63 -24.47 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.03 8.56 -34.44 -0.29 -14.33 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 10 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 11 C -0.11 -2.59 5.02 -26.61 -0.13 -2.73 16 12 C -0.12 -2.26 6.09 -26.65 -0.16 -2.43 16 13 C 0.07 1.34 5.04 -3.83 -0.02 1.32 16 14 N -0.50 -9.97 4.70 -173.26 -0.81 -10.78 16 15 C 0.35 6.32 5.68 -155.02 -0.88 5.44 16 16 C -0.23 -3.48 8.72 -39.20 -0.34 -3.82 16 17 C -0.05 -0.58 10.16 -39.37 -0.40 -0.98 16 18 C -0.20 -2.55 9.17 -39.20 -0.36 -2.91 16 19 C 0.32 4.68 6.40 -155.01 -0.99 3.68 16 20 N -0.47 -5.94 4.68 -173.27 -0.81 -6.75 16 21 C 0.06 0.61 5.25 -3.83 -0.02 0.59 16 22 C -0.11 -0.91 5.67 -26.65 -0.15 -1.06 16 23 C 0.09 0.76 3.32 -67.59 -0.22 0.53 16 24 N -0.85 -6.24 9.25 -4.56 -0.04 -6.28 16 25 C -0.11 -1.14 5.64 -26.65 -0.15 -1.29 16 26 C 0.07 0.87 4.65 -3.84 -0.02 0.85 16 27 N -0.50 -8.85 8.71 -11.62 -0.10 -8.95 16 28 C 0.08 1.79 4.43 -3.83 -0.02 1.77 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.03 0.54 7.11 -51.93 -0.37 0.17 16 35 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.13 1.90 7.08 -52.49 -0.37 1.53 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.13 1.29 7.14 -52.49 -0.37 0.92 16 39 H 0.09 0.74 6.67 -51.93 -0.35 0.39 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.34 1.99 9.04 -39.29 -0.36 1.63 16 45 H 0.34 2.17 8.99 -39.29 -0.35 1.82 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 49 H 0.09 1.34 7.70 -51.93 -0.40 0.94 16 50 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 51 H 0.03 0.57 7.74 -51.93 -0.40 0.16 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -29.61 388.41 -13.52 -43.13 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.75 Total: 4.64 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -4.47 Total: -12.49 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -1.14 Total: -57.24 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.61 -13.52 -43.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.983 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds