Wall clock time and date at job start Tue Mar 31 2020 17:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 115.56355 * 2 1 4 4 C 1.52999 * 117.49753 * 145.68662 * 2 1 3 5 5 C 1.52998 * 117.49983 * 214.30947 * 2 1 3 6 6 H 1.09001 * 117.51988 * 359.97438 * 5 2 1 7 7 N 1.46495 * 117.49933 * 145.02290 * 5 2 1 8 8 C 1.36744 * 127.13934 * 243.08471 * 7 5 2 9 9 C 1.50699 * 126.34052 * 359.97438 * 8 7 5 10 10 C 1.53789 * 113.60915 * 217.49433 * 9 8 7 11 11 C 1.53784 * 87.07964 * 220.01869 * 10 9 8 12 12 C 1.53781 * 113.61229 * 120.00097 * 9 8 7 13 13 N 1.30291 * 107.30701 * 180.02562 * 8 7 5 14 14 N 1.28531 * 110.05488 * 359.73294 * 13 8 7 15 15 C 1.31221 * 109.85861 * 0.44930 * 14 13 8 16 16 N 1.38576 * 126.47176 * 179.82434 * 15 14 13 17 17 C 1.46844 * 110.99996 * 294.95701 * 16 15 14 18 18 C 1.53039 * 109.52412 * 185.83844 * 17 16 15 19 19 C 1.53117 * 109.27600 * 300.82027 * 18 17 16 20 20 C 1.50710 * 109.51834 * 177.55775 * 19 18 17 21 21 H 1.07998 * 120.00071 * 335.56788 * 20 19 18 22 22 C 1.37881 * 119.99480 * 155.56886 * 20 19 18 23 23 N 1.31515 * 120.00267 * 355.33899 * 22 20 19 24 24 Si 1.86804 * 119.99501 * 175.33600 * 22 20 19 25 25 H 1.48496 * 109.47097 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46922 * 239.99770 * 24 22 20 27 27 H 1.48499 * 109.46926 * 120.00199 * 24 22 20 28 28 C 1.53122 * 109.21295 * 57.62383 * 19 18 17 29 29 C 1.46843 * 110.99888 * 59.16466 * 16 15 14 30 30 H 1.09004 * 109.47064 * 205.68871 * 1 2 3 31 31 H 1.08994 * 109.47269 * 325.69123 * 1 2 3 32 32 H 1.09000 * 109.46832 * 85.69309 * 1 2 3 33 33 H 1.09001 * 117.50275 * 0.02562 * 4 2 1 34 34 H 1.09003 * 117.51574 * 214.97233 * 4 2 1 35 35 H 1.08993 * 112.85354 * 348.79672 * 9 8 7 36 36 H 1.08996 * 113.61702 * 334.56633 * 10 9 8 37 37 H 1.09001 * 113.61471 * 105.47296 * 10 9 8 38 38 H 1.09002 * 113.61726 * 270.88649 * 11 10 9 39 39 H 1.09001 * 113.61301 * 139.97920 * 11 10 9 40 40 H 1.08997 * 113.61255 * 254.52356 * 12 9 8 41 41 H 1.08993 * 113.61773 * 25.42871 * 12 9 8 42 42 H 1.09000 * 109.46417 * 65.81927 * 17 16 15 43 43 H 1.09005 * 109.45257 * 305.84680 * 17 16 15 44 44 H 1.08994 * 109.50502 * 180.87678 * 18 17 16 45 45 H 1.09005 * 109.53189 * 60.77858 * 18 17 16 46 46 H 1.08999 * 109.52314 * 297.67862 * 19 18 17 47 47 H 0.97001 * 119.99586 * 5.38489 * 23 22 20 48 48 H 1.08992 * 109.50743 * 62.32061 * 28 19 18 49 49 H 1.09001 * 109.49677 * 182.43475 * 28 19 18 50 50 H 1.09006 * 109.46685 * 294.17475 * 29 16 15 51 51 H 1.08999 * 109.46538 * 54.15342 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7650 6 1 1.6116 -1.8589 -1.2680 7 7 3.4932 -0.7906 -1.4413 8 6 3.7438 -0.8335 -2.7849 9 6 2.7696 -1.2344 -3.8626 10 6 3.4119 -2.0388 -5.0052 11 6 2.5249 -1.2308 -5.9672 12 6 2.5049 -0.1271 -4.8964 13 7 4.9810 -0.4648 -2.9605 14 7 5.5234 -0.1885 -1.8285 15 6 4.6570 -0.3769 -0.8612 16 7 4.8799 -0.1859 0.4931 17 6 5.8821 -1.1319 1.0000 18 6 5.9961 -0.9908 2.5196 19 6 6.4013 0.4448 2.8651 20 6 6.4568 0.6059 4.3625 21 1 5.8762 -0.0467 4.9977 22 6 7.2487 1.5864 4.9214 23 7 8.0255 2.3206 4.1551 24 14 7.2183 1.8721 6.7672 25 1 6.2690 0.9213 7.3997 26 1 6.7841 3.2647 7.0455 27 1 8.5781 1.6570 7.3238 28 6 5.3677 1.4137 2.2841 29 6 5.2710 1.2018 0.7715 30 1 -0.3633 -0.9261 0.4455 31 1 -0.3633 0.8488 0.5792 32 1 -0.3633 0.0772 -1.0248 33 1 1.6112 -1.8587 1.2680 34 1 3.1716 -0.8755 1.2684 35 1 1.8613 -1.6869 -3.4651 36 1 4.4777 -1.8471 -5.1289 37 1 3.1722 -3.1019 -4.9792 38 1 1.5495 -1.6834 -6.1461 39 1 3.0319 -0.9380 -6.8866 40 1 1.5331 0.3531 -4.7826 41 1 3.3227 0.5872 -4.9904 42 1 6.8478 -0.9180 0.5420 43 1 5.5796 -2.1492 0.7514 44 1 6.7512 -1.6821 2.8937 45 1 5.0345 -1.2183 2.9799 46 1 7.3814 0.6591 2.4391 47 1 7.9840 2.2264 3.1905 48 1 4.3958 1.2255 2.7400 49 1 5.6744 2.4392 2.4901 50 1 6.2396 1.4049 0.3146 51 1 4.5247 1.8796 0.3570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001742978225.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:20 Heat of formation + Delta-G solvation = 122.271474 kcal Electronic energy + Delta-G solvation = -29602.773070 eV Core-core repulsion = 25925.629233 eV Total energy + Delta-G solvation = -3677.143837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.212 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.97081 -39.04252 -38.41140 -38.01936 -34.30463 -33.17137 -31.56722 -30.25587 -29.47151 -28.48752 -26.06992 -25.88845 -25.26584 -23.74484 -22.47872 -22.44784 -21.53219 -21.09181 -20.13845 -19.53803 -18.81112 -17.57056 -16.87955 -16.26030 -15.99735 -15.81176 -15.30770 -14.48333 -14.32571 -14.25829 -13.76945 -13.69818 -13.46369 -13.32999 -13.08542 -12.81708 -12.68344 -12.47572 -12.44257 -12.14441 -11.79345 -11.72262 -11.49249 -11.35376 -11.26508 -11.13221 -10.82999 -10.79425 -10.75059 -10.60117 -10.55843 -10.49129 -10.23794 -10.13031 -9.73529 -9.48805 -9.26744 -8.79235 -8.51867 -8.36393 -8.26016 -6.33938 -4.05633 1.71305 2.22850 2.89538 3.43645 3.46535 3.50495 3.59946 3.81032 4.08267 4.30324 4.37683 4.41128 4.52440 4.54752 4.55614 4.61277 4.68462 5.03293 5.07696 5.14968 5.30533 5.33056 5.39566 5.46037 5.47985 5.55830 5.58190 5.62951 5.64949 5.69701 5.73642 5.78018 5.81898 5.90913 5.92793 5.97732 6.02897 6.09705 6.17414 6.23325 6.35577 6.40126 6.46442 6.65346 6.72884 6.84869 7.03092 7.11010 7.44751 7.50594 7.63458 8.23660 8.45556 8.85138 8.89288 9.66647 11.04487 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.003060 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.983991 B = 9147.752531 C = 9918.549780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.144 4.144 3 H 0.108 0.892 4 C -0.168 4.168 5 C 0.050 3.950 6 H 0.135 0.865 7 N -0.437 5.437 8 C 0.184 3.816 9 C -0.027 4.027 10 C -0.122 4.122 11 C -0.140 4.140 12 C -0.123 4.123 13 N -0.286 5.286 14 N -0.312 5.312 15 C 0.356 3.644 16 N -0.458 5.458 17 C 0.066 3.934 18 C -0.098 4.098 19 C 0.029 3.971 20 C -0.591 4.591 21 H 0.049 0.951 22 C 0.020 3.980 23 N -0.914 5.914 24 Si 1.070 2.930 25 H -0.290 1.290 26 H -0.288 1.288 27 H -0.288 1.288 28 C -0.102 4.102 29 C 0.067 3.933 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.031 0.969 47 H 0.271 0.729 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.047 0.953 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.999 -8.212 -15.005 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.164 4.164 3 H 0.126 0.874 4 C -0.205 4.205 5 C -0.054 4.054 6 H 0.153 0.847 7 N -0.127 5.127 8 C -0.083 4.083 9 C -0.048 4.048 10 C -0.160 4.160 11 C -0.178 4.178 12 C -0.161 4.161 13 N -0.126 5.126 14 N -0.156 5.156 15 C 0.000 4.000 16 N -0.185 5.185 17 C -0.060 4.060 18 C -0.136 4.136 19 C 0.010 3.990 20 C -0.629 4.629 21 H 0.068 0.932 22 C -0.185 4.185 23 N -0.550 5.550 24 Si 0.899 3.101 25 H -0.216 1.216 26 H -0.215 1.215 27 H -0.214 1.214 28 C -0.141 4.141 29 C -0.060 4.060 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.168 0.832 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.049 0.951 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.065 0.935 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.414 -7.077 -14.210 22.127 hybrid contribution -1.292 -1.034 -0.898 1.883 sum -16.706 -8.111 -15.108 23.940 Atomic orbital electron populations 1.21381 0.91944 1.02585 1.01900 1.22780 0.95488 0.95333 1.02764 0.87402 1.24170 1.05719 0.99936 0.90680 1.22040 0.85737 1.03290 0.94361 0.84719 1.45802 1.10541 1.49593 1.06806 1.24559 0.96028 1.05126 0.82556 1.21000 0.95090 0.99220 0.89488 1.22952 1.01020 0.98531 0.93524 1.22805 1.00164 0.97189 0.97625 1.22953 1.02549 0.96346 0.94282 1.73925 1.04225 1.16226 1.18266 1.74689 1.25078 1.20835 0.94951 1.22658 0.83623 1.01008 0.92662 1.59015 1.47304 1.07796 1.04386 1.22307 0.92235 0.93367 0.98106 1.21652 1.01071 1.00562 0.90279 1.18911 0.94036 0.89365 0.96717 1.21948 1.30915 1.19163 0.90892 0.93240 1.25786 0.92542 0.93440 1.06708 1.70736 1.36165 1.41271 1.06812 0.83531 0.76085 0.75941 0.74538 1.21568 1.21454 1.21441 1.21854 1.01263 1.01448 0.89496 1.22341 0.99100 0.84474 1.00049 0.92162 0.91434 0.92218 0.87899 0.83176 0.87929 0.88479 0.91169 0.90037 0.90774 0.91134 0.89081 0.93468 0.92099 0.91943 0.92371 0.95131 0.91750 0.92523 0.91861 0.93485 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.19 37.16 0.38 -0.56 16 2 C -0.14 -1.54 6.32 -90.62 -0.57 -2.12 16 3 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 4 C -0.17 -1.95 9.57 -26.73 -0.26 -2.20 16 5 C 0.05 0.56 6.33 -67.93 -0.43 0.13 16 6 H 0.14 1.15 7.55 -51.93 -0.39 0.76 16 7 N -0.44 -6.33 3.14 -107.01 -0.34 -6.67 16 8 C 0.18 2.62 7.12 -154.01 -1.10 1.52 16 9 C -0.03 -0.27 4.09 -90.96 -0.37 -0.64 16 10 C -0.12 -1.07 7.62 -25.91 -0.20 -1.27 16 11 C -0.14 -0.99 8.08 -25.91 -0.21 -1.20 16 12 C -0.12 -1.07 7.63 -25.92 -0.20 -1.27 16 13 N -0.29 -5.02 11.79 32.99 0.39 -4.63 16 14 N -0.31 -6.07 12.17 30.31 0.37 -5.70 16 15 C 0.36 6.21 6.30 -318.87 -2.01 4.20 16 16 N -0.46 -7.97 1.77 -174.55 -0.31 -8.28 16 17 C 0.07 1.20 5.35 -3.83 -0.02 1.18 16 18 C -0.10 -1.94 5.36 -26.65 -0.14 -2.09 16 19 C 0.03 0.67 1.88 -91.64 -0.17 0.50 16 20 C -0.59 -15.79 8.32 -34.43 -0.29 -16.08 16 21 H 0.05 1.33 7.81 -52.49 -0.41 0.92 16 22 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 23 N -0.91 -26.99 13.62 55.43 0.76 -26.23 16 24 Si 1.07 24.79 29.91 -169.99 -5.08 19.71 16 25 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 C -0.10 -2.18 5.37 -26.65 -0.14 -2.32 16 29 C 0.07 1.27 5.35 -3.83 -0.02 1.25 16 30 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 34 H 0.15 2.20 5.22 -51.93 -0.27 1.93 16 35 H 0.10 0.80 7.37 -51.93 -0.38 0.41 16 36 H 0.10 1.04 7.78 -51.93 -0.40 0.64 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.03 0.80 6.70 -51.93 -0.35 0.46 16 47 H 0.27 7.98 6.67 -40.82 -0.27 7.71 16 48 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 49 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 50 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.06 1.04 8.10 -51.93 -0.42 0.61 16 LS Contribution 399.23 15.07 6.02 6.02 Total: -1.00 -30.86 399.23 -12.91 -43.76 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.86 Total: 2.53 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -5.85 Total: -20.51 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.87 Total: -51.51 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.86 -12.91 -43.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001742978225.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.036 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds