Wall clock time and date at job start Tue Mar 31 2020 17:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 115.56355 * 2 1 4 4 C 1.52999 * 117.49753 * 145.68662 * 2 1 3 5 5 C 1.52998 * 117.49983 * 214.30947 * 2 1 3 6 6 H 1.09001 * 117.51988 * 359.97438 * 5 2 1 7 7 N 1.46495 * 117.49933 * 145.02290 * 5 2 1 8 8 C 1.36744 * 127.13934 * 243.08471 * 7 5 2 9 9 C 1.50699 * 126.34052 * 359.97438 * 8 7 5 10 10 C 1.53789 * 113.60915 * 217.49433 * 9 8 7 11 11 C 1.53784 * 87.07964 * 220.01869 * 10 9 8 12 12 C 1.53781 * 113.61229 * 120.00097 * 9 8 7 13 13 N 1.30291 * 107.30701 * 180.02562 * 8 7 5 14 14 N 1.28531 * 110.05488 * 359.73294 * 13 8 7 15 15 C 1.31221 * 109.85861 * 0.44930 * 14 13 8 16 16 N 1.38576 * 126.47176 * 179.82434 * 15 14 13 17 17 C 1.46844 * 110.99996 * 294.95701 * 16 15 14 18 18 C 1.53039 * 109.52412 * 185.83844 * 17 16 15 19 19 C 1.53117 * 109.27600 * 300.82027 * 18 17 16 20 20 C 1.50710 * 109.51834 * 177.55775 * 19 18 17 21 21 H 1.07998 * 120.00071 * 335.56788 * 20 19 18 22 22 C 1.37881 * 119.99480 * 155.56886 * 20 19 18 23 23 N 1.31515 * 120.00267 * 355.33899 * 22 20 19 24 24 Si 1.86804 * 119.99501 * 175.33600 * 22 20 19 25 25 H 1.48496 * 109.47097 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46922 * 239.99770 * 24 22 20 27 27 H 1.48499 * 109.46926 * 120.00199 * 24 22 20 28 28 C 1.53122 * 109.21295 * 57.62383 * 19 18 17 29 29 C 1.46843 * 110.99888 * 59.16466 * 16 15 14 30 30 H 1.09004 * 109.47064 * 205.68871 * 1 2 3 31 31 H 1.08994 * 109.47269 * 325.69123 * 1 2 3 32 32 H 1.09000 * 109.46832 * 85.69309 * 1 2 3 33 33 H 1.09001 * 117.50275 * 0.02562 * 4 2 1 34 34 H 1.09003 * 117.51574 * 214.97233 * 4 2 1 35 35 H 1.08993 * 112.85354 * 348.79672 * 9 8 7 36 36 H 1.08996 * 113.61702 * 334.56633 * 10 9 8 37 37 H 1.09001 * 113.61471 * 105.47296 * 10 9 8 38 38 H 1.09002 * 113.61726 * 270.88649 * 11 10 9 39 39 H 1.09001 * 113.61301 * 139.97920 * 11 10 9 40 40 H 1.08997 * 113.61255 * 254.52356 * 12 9 8 41 41 H 1.08993 * 113.61773 * 25.42871 * 12 9 8 42 42 H 1.09000 * 109.46417 * 65.81927 * 17 16 15 43 43 H 1.09005 * 109.45257 * 305.84680 * 17 16 15 44 44 H 1.08994 * 109.50502 * 180.87678 * 18 17 16 45 45 H 1.09005 * 109.53189 * 60.77858 * 18 17 16 46 46 H 1.08999 * 109.52314 * 297.67862 * 19 18 17 47 47 H 0.97001 * 119.99586 * 5.38489 * 23 22 20 48 48 H 1.08992 * 109.50743 * 62.32061 * 28 19 18 49 49 H 1.09001 * 109.49677 * 182.43475 * 28 19 18 50 50 H 1.09006 * 109.46685 * 294.17475 * 29 16 15 51 51 H 1.08999 * 109.46538 * 54.15342 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7650 6 1 1.6116 -1.8589 -1.2680 7 7 3.4932 -0.7906 -1.4413 8 6 3.7438 -0.8335 -2.7849 9 6 2.7696 -1.2344 -3.8626 10 6 3.4119 -2.0388 -5.0052 11 6 2.5249 -1.2308 -5.9672 12 6 2.5049 -0.1271 -4.8964 13 7 4.9810 -0.4648 -2.9605 14 7 5.5234 -0.1885 -1.8285 15 6 4.6570 -0.3769 -0.8612 16 7 4.8799 -0.1859 0.4931 17 6 5.8821 -1.1319 1.0000 18 6 5.9961 -0.9908 2.5196 19 6 6.4013 0.4448 2.8651 20 6 6.4568 0.6059 4.3625 21 1 5.8762 -0.0467 4.9977 22 6 7.2487 1.5864 4.9214 23 7 8.0255 2.3206 4.1551 24 14 7.2183 1.8721 6.7672 25 1 6.2690 0.9213 7.3997 26 1 6.7841 3.2647 7.0455 27 1 8.5781 1.6570 7.3238 28 6 5.3677 1.4137 2.2841 29 6 5.2710 1.2018 0.7715 30 1 -0.3633 -0.9261 0.4455 31 1 -0.3633 0.8488 0.5792 32 1 -0.3633 0.0772 -1.0248 33 1 1.6112 -1.8587 1.2680 34 1 3.1716 -0.8755 1.2684 35 1 1.8613 -1.6869 -3.4651 36 1 4.4777 -1.8471 -5.1289 37 1 3.1722 -3.1019 -4.9792 38 1 1.5495 -1.6834 -6.1461 39 1 3.0319 -0.9380 -6.8866 40 1 1.5331 0.3531 -4.7826 41 1 3.3227 0.5872 -4.9904 42 1 6.8478 -0.9180 0.5420 43 1 5.5796 -2.1492 0.7514 44 1 6.7512 -1.6821 2.8937 45 1 5.0345 -1.2183 2.9799 46 1 7.3814 0.6591 2.4391 47 1 7.9840 2.2264 3.1905 48 1 4.3958 1.2255 2.7400 49 1 5.6744 2.4392 2.4901 50 1 6.2396 1.4049 0.3146 51 1 4.5247 1.8796 0.3570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001742978225.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:19 Heat of formation + Delta-G solvation = 109.994054 kcal Electronic energy + Delta-G solvation = -29603.305459 eV Core-core repulsion = 25925.629233 eV Total energy + Delta-G solvation = -3677.676226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.212 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.20131 -40.30194 -39.41025 -38.99851 -36.14005 -34.29428 -33.38523 -31.92667 -30.77510 -29.21455 -27.48264 -26.66034 -26.53690 -25.05307 -24.12693 -24.05305 -22.64359 -21.99146 -21.26848 -20.83013 -20.04092 -18.92988 -18.51764 -17.61145 -17.26486 -16.70508 -16.04665 -15.85565 -15.73131 -15.66265 -15.48814 -15.23710 -14.59959 -14.43855 -14.21117 -13.96186 -13.80822 -13.46466 -13.44923 -13.30815 -13.08260 -12.92398 -12.76584 -12.67170 -12.63337 -12.44990 -12.26822 -12.19730 -11.96136 -11.91135 -11.77938 -11.55187 -11.41514 -11.34463 -11.14950 -11.13188 -10.51973 -10.46688 -10.39036 -10.08140 -9.83087 -8.56270 -6.27995 0.51643 1.09034 1.54719 1.62123 1.63007 1.78806 2.47111 2.59425 2.64580 3.15468 3.22613 3.49632 3.59078 3.67687 3.68809 3.74160 3.78113 3.93172 3.96291 3.97015 4.01746 4.21263 4.26004 4.28163 4.31956 4.41940 4.43706 4.60644 4.69367 4.71595 4.71899 4.81883 4.86998 4.89693 4.90541 4.95506 4.97356 5.02160 5.03398 5.12412 5.13189 5.16988 5.19896 5.29854 5.41944 5.43851 5.55095 5.57204 5.61546 5.75089 6.12363 6.17740 6.27560 6.68410 7.52677 7.58448 8.82106 Molecular weight = 330.21amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.003060 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.983991 B = 9147.752531 C = 9918.549780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.137 4.137 3 H 0.079 0.921 4 C -0.176 4.176 5 C 0.045 3.955 6 H 0.174 0.826 7 N -0.433 5.433 8 C 0.202 3.798 9 C -0.031 4.031 10 C -0.125 4.125 11 C -0.124 4.124 12 C -0.124 4.124 13 N -0.324 5.324 14 N -0.353 5.353 15 C 0.339 3.661 16 N -0.439 5.439 17 C 0.077 3.923 18 C -0.085 4.085 19 C 0.024 3.976 20 C -0.595 4.595 21 H 0.050 0.950 22 C -0.034 4.034 23 N -0.943 5.943 24 Si 1.116 2.884 25 H -0.268 1.268 26 H -0.283 1.283 27 H -0.285 1.285 28 C -0.085 4.085 29 C 0.082 3.918 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.070 0.930 46 H -0.006 1.006 47 H 0.257 0.743 48 H 0.064 0.936 49 H 0.036 0.964 50 H 0.022 0.978 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.039 -10.246 -15.568 28.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.157 4.157 3 H 0.097 0.903 4 C -0.213 4.213 5 C -0.057 4.057 6 H 0.191 0.809 7 N -0.123 5.123 8 C -0.065 4.065 9 C -0.052 4.052 10 C -0.163 4.163 11 C -0.161 4.161 12 C -0.163 4.163 13 N -0.163 5.163 14 N -0.196 5.196 15 C -0.018 4.018 16 N -0.165 5.165 17 C -0.050 4.050 18 C -0.123 4.123 19 C 0.005 3.995 20 C -0.633 4.633 21 H 0.069 0.931 22 C -0.231 4.231 23 N -0.581 5.581 24 Si 0.938 3.062 25 H -0.192 1.192 26 H -0.209 1.209 27 H -0.211 1.211 28 C -0.124 4.124 29 C -0.045 4.045 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.148 0.852 34 H 0.137 0.863 35 H 0.155 0.845 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.012 0.988 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.054 0.946 50 H 0.040 0.960 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.480 -9.131 -14.788 26.106 hybrid contribution -0.063 -0.427 -0.809 0.917 sum -19.544 -9.558 -15.597 26.769 Atomic orbital electron populations 1.21383 0.89195 1.03464 1.03093 1.22768 0.97325 0.93644 1.01959 0.90304 1.24121 1.05043 1.01268 0.90891 1.22565 0.84529 1.04351 0.94294 0.80916 1.46025 1.10715 1.48712 1.06857 1.25497 0.95624 1.02167 0.83238 1.21480 0.95229 1.00136 0.88309 1.22934 0.99816 0.99789 0.93794 1.22790 1.01006 0.95565 0.96738 1.22929 1.02450 0.96210 0.94719 1.73853 1.06276 1.18360 1.17837 1.74583 1.26947 1.22036 0.96081 1.22553 0.84820 1.02391 0.92016 1.59030 1.46258 1.06274 1.04951 1.22138 0.91606 0.94671 0.96564 1.21465 1.01381 0.97798 0.91669 1.18900 0.92960 0.92315 0.95340 1.22306 1.30096 1.18487 0.92447 0.93124 1.27185 0.92182 0.93292 1.10471 1.70860 1.38091 1.42971 1.06188 0.82950 0.76686 0.76550 0.69972 1.19242 1.20900 1.21117 1.21550 1.00541 0.99206 0.91089 1.22044 0.98198 0.86241 0.98048 0.90446 0.91580 0.90676 0.85239 0.86307 0.84534 0.91244 0.89362 0.87231 0.90642 0.89248 0.91852 0.95748 0.89921 0.92131 0.91146 0.98810 0.93289 0.91735 0.94557 0.95985 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.19 71.98 0.73 -0.60 16 2 C -0.14 -2.60 6.32 -10.79 -0.07 -2.67 16 3 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.18 -3.62 9.57 30.59 0.29 -3.33 16 5 C 0.05 0.87 6.33 44.99 0.28 1.16 16 6 H 0.17 2.00 7.55 -2.39 -0.02 1.98 16 7 N -0.43 -11.97 3.14 -492.48 -1.54 -13.51 16 8 C 0.20 5.53 7.12 137.64 0.98 6.51 16 9 C -0.03 -0.51 4.09 -11.01 -0.05 -0.56 16 10 C -0.12 -1.90 7.62 31.12 0.24 -1.66 16 11 C -0.12 -1.33 8.08 31.12 0.25 -1.08 16 12 C -0.12 -1.87 7.63 31.12 0.24 -1.63 16 13 N -0.32 -11.60 11.79 -49.54 -0.58 -12.19 16 14 N -0.35 -14.27 12.17 -58.00 -0.71 -14.97 16 15 C 0.34 11.97 6.30 260.11 1.64 13.61 16 16 N -0.44 -15.57 1.77 -706.14 -1.25 -16.82 16 17 C 0.08 2.85 5.35 86.33 0.46 3.31 16 18 C -0.09 -3.44 5.36 30.65 0.16 -3.27 16 19 C 0.02 1.17 1.88 -11.46 -0.02 1.14 16 20 C -0.60 -32.42 8.32 25.60 0.21 -32.21 16 21 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 22 C -0.03 -1.91 5.46 84.66 0.46 -1.45 16 23 N -0.94 -57.99 13.62 21.45 0.29 -57.69 16 24 Si 1.12 50.07 29.91 68.60 2.05 52.12 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 28 C -0.09 -3.80 5.37 30.65 0.16 -3.64 16 29 C 0.08 3.27 5.35 86.33 0.46 3.74 16 30 H 0.08 0.67 7.90 -2.38 -0.02 0.66 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.13 1.96 8.05 -2.39 -0.02 1.94 16 34 H 0.12 3.33 5.22 -2.39 -0.01 3.31 16 35 H 0.14 1.38 7.37 -2.39 -0.02 1.36 16 36 H 0.07 1.47 7.78 -2.39 -0.02 1.45 16 37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.32 8.09 -2.39 -0.02 1.30 16 42 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 2.72 8.10 -2.38 -0.02 2.70 16 44 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 46 H -0.01 -0.36 6.70 -2.39 -0.02 -0.37 16 47 H 0.26 16.09 6.67 -92.71 -0.62 15.47 16 48 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 49 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 51 H 0.07 2.56 8.10 -2.39 -0.02 2.55 16 Total: -1.00 -71.91 399.23 5.76 -66.15 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 1.05 Total: 19.55 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 6.45 Total: -22.63 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -3.79 Total: -115.19 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Total: -71.91 5.76 -66.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001742978225.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.147 kcal (2) G-P(sol) polarization free energy of solvation -71.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds