Wall clock time and date at job start Tue Mar 31 2020 16:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35678 * 117.00191 * 2 1 4 4 C 1.38605 * 120.13005 * 0.02562 * 3 2 1 5 5 C 1.38155 * 120.17153 * 180.02562 * 4 3 2 6 6 C 1.38497 * 120.43501 * 359.97438 * 5 4 3 7 7 Br 1.89098 * 119.87156 * 179.97438 * 6 5 4 8 8 C 1.38193 * 120.25495 * 359.97438 * 6 5 4 9 9 F 1.35101 * 120.08414 * 179.97438 * 8 6 5 10 10 C 1.40011 * 119.82443 * 359.76247 * 8 6 5 11 11 C 1.47295 * 120.21296 * 180.25352 * 10 8 6 12 12 O 1.21640 * 119.99982 * 270.25128 * 11 10 8 13 13 N 1.34781 * 119.99677 * 90.25428 * 11 10 8 14 14 C 1.46497 * 120.00010 * 359.97438 * 13 11 10 15 15 C 1.36923 * 119.99531 * 180.02562 * 13 11 10 16 16 H 1.07998 * 119.99843 * 322.80539 * 15 13 11 17 17 C 1.39012 * 119.99967 * 142.81599 * 15 13 11 18 18 N 1.31387 * 119.99997 * 158.38688 * 17 15 13 19 19 Si 1.86799 * 119.99958 * 338.38167 * 17 15 13 20 20 H 1.48499 * 109.47139 * 95.71949 * 19 17 15 21 21 H 1.48496 * 109.47001 * 215.72422 * 19 17 15 22 22 H 1.48505 * 109.46985 * 335.72368 * 19 17 15 23 23 H 1.09000 * 109.47600 * 59.99519 * 1 2 3 24 24 H 1.09005 * 109.46981 * 300.00119 * 1 2 3 25 25 H 1.09000 * 109.46973 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.91130 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.78371 * 180.02562 * 5 4 3 28 28 H 1.09006 * 109.46968 * 85.14783 * 14 13 11 29 29 H 1.08997 * 109.46768 * 205.14210 * 14 13 11 30 30 H 1.08994 * 109.47336 * 325.14772 * 14 13 11 31 31 H 0.96998 * 120.00171 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2928 2.3731 0.0005 5 6 1.9191 3.6045 0.0000 6 6 3.3015 3.6884 -0.0005 7 35 4.1423 5.3822 -0.0020 8 6 4.0689 2.5391 0.0000 9 9 5.4172 2.6250 -0.0011 10 6 3.4454 1.2855 0.0061 11 6 4.2549 0.0550 0.0123 12 8 4.5933 -0.4558 -1.0385 13 7 4.6208 -0.5050 1.1825 14 6 4.2137 0.1105 2.4480 15 6 5.3738 -1.6485 1.1882 16 1 5.2015 -2.4122 0.4443 17 6 6.3598 -1.8266 2.1518 18 7 6.7845 -3.0357 2.4416 19 14 7.0812 -0.3468 3.0345 20 1 6.3749 -0.1477 4.3255 21 1 8.5253 -0.5789 3.2909 22 1 6.9168 0.8627 2.1887 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2142 2.3173 0.0014 27 1 1.3269 4.5076 0.0008 28 1 3.2158 -0.2366 2.7164 29 1 4.9184 -0.1690 3.2311 30 1 4.2039 1.1948 2.3381 31 1 7.4728 -3.1600 3.1136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197021125.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:08 Heat of formation + Delta-G solvation = -60.055018 kcal Electronic energy + Delta-G solvation = -20975.624411 eV Core-core repulsion = 17412.742767 eV Total energy + Delta-G solvation = -3562.881644 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 331.001 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.86661 -40.40673 -38.38135 -37.28977 -34.79742 -32.31991 -31.86811 -30.97850 -28.98338 -27.34378 -26.49109 -25.45762 -23.24419 -22.14326 -19.67568 -18.39278 -17.26873 -17.06383 -16.57224 -16.08953 -16.01696 -15.63397 -15.41429 -14.88561 -14.67606 -14.04796 -13.78171 -12.98302 -12.79776 -12.76129 -12.61349 -12.44779 -12.26423 -11.82692 -11.71722 -11.69049 -11.37093 -10.76806 -10.44130 -10.40369 -10.37031 -9.91577 -9.23206 -8.89017 -8.63960 -8.29930 -7.77019 -6.41851 -3.98181 0.88009 0.89920 1.44828 2.99629 3.03364 3.22756 3.23581 3.32239 3.55292 4.04980 4.15845 4.34470 4.54718 4.74823 4.93831 4.98162 5.02494 5.05119 5.27044 5.38540 5.60226 5.70449 5.74321 5.81722 5.96030 6.10775 6.27334 6.38256 7.15514 7.50838 8.23930 8.46218 8.90451 9.27446 9.70122 10.69486 Molecular weight = 331.00amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.005992 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.783588 B = 4671.762976 C = 6128.518827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.291 6.291 3 C 0.198 3.802 4 C -0.220 4.220 5 C -0.020 4.020 6 C -0.174 4.174 7 Br -0.035 7.035 8 C 0.192 3.808 9 F -0.107 7.107 10 C -0.161 4.161 11 C 0.512 3.488 12 O -0.549 6.549 13 N -0.450 5.450 14 C 0.066 3.934 15 C -0.315 4.315 16 H 0.109 0.891 17 C 0.063 3.937 18 N -0.858 5.858 19 Si 0.872 3.128 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.259 1.259 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 16.905 -0.714 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.202 6.202 3 C 0.150 3.850 4 C -0.239 4.239 5 C -0.039 4.039 6 C -0.255 4.255 7 Br 0.050 6.950 8 C 0.170 3.830 9 F -0.085 7.085 10 C -0.167 4.167 11 C 0.298 3.702 12 O -0.430 6.430 13 N -0.170 5.170 14 C -0.077 4.077 15 C -0.442 4.442 16 H 0.126 0.874 17 C -0.144 4.144 18 N -0.494 5.494 19 Si 0.699 3.301 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.183 1.183 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.124 0.876 26 H 0.163 0.837 27 H 0.163 0.837 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.891 16.904 -1.117 21.287 hybrid contribution 0.257 0.520 0.658 0.877 sum -12.633 17.424 -0.459 21.527 Atomic orbital electron populations 1.23207 0.77752 1.04736 1.01405 1.86241 1.21695 1.25538 1.86703 1.18793 0.90172 0.85049 0.91025 1.21186 1.00660 0.91135 1.10965 1.20727 0.91144 0.98230 0.93844 1.21575 0.95520 0.90623 1.17746 1.96692 1.80634 1.19645 1.98018 1.16967 0.77660 0.91128 0.97274 1.91621 1.27597 1.96652 1.92618 1.19583 0.92138 0.94716 1.10223 1.17430 0.83971 0.83505 0.85259 1.90686 1.58018 1.63329 1.30980 1.43526 1.46788 1.23928 1.02786 1.21973 1.00519 0.96640 0.88598 1.19056 1.14533 0.93508 1.17127 0.87353 1.25361 0.95855 0.96457 0.96727 1.69732 1.28437 1.20658 1.30585 0.87025 0.78888 0.84546 0.79615 1.20127 1.21116 1.18294 0.92259 0.92219 0.87620 0.83656 0.83706 0.92747 0.91273 0.93297 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.29 -4.68 9.95 -18.74 -0.19 -4.87 16 3 C 0.20 3.19 6.70 -38.69 -0.26 2.94 16 4 C -0.22 -2.54 9.03 -39.48 -0.36 -2.89 16 5 C -0.02 -0.22 9.76 -39.52 -0.39 -0.61 16 6 C -0.17 -2.52 6.22 -39.50 -0.25 -2.77 16 7 Br -0.03 -0.45 33.26 -68.01 -2.26 -2.71 16 8 C 0.19 3.55 6.84 -38.93 -0.27 3.29 16 9 F -0.11 -2.22 16.28 2.25 0.04 -2.18 16 10 C -0.16 -3.23 3.99 -104.80 -0.42 -3.64 16 11 C 0.51 13.03 6.24 -12.58 -0.08 12.95 16 12 O -0.55 -16.12 16.97 5.24 0.09 -16.03 16 13 N -0.45 -11.64 2.58 -123.47 -0.32 -11.96 16 14 C 0.07 1.41 8.79 59.85 0.53 1.94 16 15 C -0.32 -9.25 9.37 -14.99 -0.14 -9.39 16 16 H 0.11 3.53 7.90 -52.49 -0.41 3.12 16 17 C 0.06 1.77 5.29 -17.45 -0.09 1.68 16 18 N -0.86 -25.07 13.96 55.50 0.77 -24.29 16 19 Si 0.87 21.18 24.96 -169.99 -4.24 16.93 16 20 H -0.27 -6.13 6.69 56.52 0.38 -5.75 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 23 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 24 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 25 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.15 1.12 6.29 -52.49 -0.33 0.79 16 27 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.52 3.42 -51.93 -0.18 1.34 16 30 H 0.05 0.93 6.75 -51.93 -0.35 0.58 16 31 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 293.24 15.07 4.42 4.42 Total: -1.00 -34.53 293.24 -4.91 -39.45 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -2.49 Total: -3.47 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.73 Total: 4.71 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.46 Total: -36.25 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.10 Total: -20.90 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.24 Total: 16.93 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.26 Total: -2.71 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.53 -4.91 -39.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197021125.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.610 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds