Wall clock time and date at job start Tue Mar 31 2020 16:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35678 * 117.00191 * 2 1 4 4 C 1.38605 * 120.13005 * 0.02562 * 3 2 1 5 5 C 1.38155 * 120.17153 * 180.02562 * 4 3 2 6 6 C 1.38497 * 120.43501 * 359.97438 * 5 4 3 7 7 Br 1.89098 * 119.87156 * 179.97438 * 6 5 4 8 8 C 1.38193 * 120.25495 * 359.97438 * 6 5 4 9 9 F 1.35101 * 120.08414 * 179.97438 * 8 6 5 10 10 C 1.40011 * 119.82443 * 359.76247 * 8 6 5 11 11 C 1.47295 * 120.21296 * 180.25352 * 10 8 6 12 12 O 1.21640 * 119.99982 * 270.25128 * 11 10 8 13 13 N 1.34781 * 119.99677 * 90.25428 * 11 10 8 14 14 C 1.46497 * 120.00010 * 359.97438 * 13 11 10 15 15 C 1.36923 * 119.99531 * 180.02562 * 13 11 10 16 16 H 1.07998 * 119.99843 * 322.80539 * 15 13 11 17 17 C 1.39012 * 119.99967 * 142.81599 * 15 13 11 18 18 N 1.31387 * 119.99997 * 158.38688 * 17 15 13 19 19 Si 1.86799 * 119.99958 * 338.38167 * 17 15 13 20 20 H 1.48499 * 109.47139 * 95.71949 * 19 17 15 21 21 H 1.48496 * 109.47001 * 215.72422 * 19 17 15 22 22 H 1.48505 * 109.46985 * 335.72368 * 19 17 15 23 23 H 1.09000 * 109.47600 * 59.99519 * 1 2 3 24 24 H 1.09005 * 109.46981 * 300.00119 * 1 2 3 25 25 H 1.09000 * 109.46973 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.91130 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.78371 * 180.02562 * 5 4 3 28 28 H 1.09006 * 109.46968 * 85.14783 * 14 13 11 29 29 H 1.08997 * 109.46768 * 205.14210 * 14 13 11 30 30 H 1.08994 * 109.47336 * 325.14772 * 14 13 11 31 31 H 0.96998 * 120.00171 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2928 2.3731 0.0005 5 6 1.9191 3.6045 0.0000 6 6 3.3015 3.6884 -0.0005 7 35 4.1423 5.3822 -0.0020 8 6 4.0689 2.5391 0.0000 9 9 5.4172 2.6250 -0.0011 10 6 3.4454 1.2855 0.0061 11 6 4.2549 0.0550 0.0123 12 8 4.5933 -0.4558 -1.0385 13 7 4.6208 -0.5050 1.1825 14 6 4.2137 0.1105 2.4480 15 6 5.3738 -1.6485 1.1882 16 1 5.2015 -2.4122 0.4443 17 6 6.3598 -1.8266 2.1518 18 7 6.7845 -3.0357 2.4416 19 14 7.0812 -0.3468 3.0345 20 1 6.3749 -0.1477 4.3255 21 1 8.5253 -0.5789 3.2909 22 1 6.9168 0.8627 2.1887 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2142 2.3173 0.0014 27 1 1.3269 4.5076 0.0008 28 1 3.2158 -0.2366 2.7164 29 1 4.9184 -0.1690 3.2311 30 1 4.2039 1.1948 2.3381 31 1 7.4728 -3.1600 3.1136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197021125.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:07 Heat of formation + Delta-G solvation = -85.417178 kcal Electronic energy + Delta-G solvation = -20976.724197 eV Core-core repulsion = 17412.742767 eV Total energy + Delta-G solvation = -3563.981430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 331.001 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.28781 -41.65747 -40.13180 -38.42922 -36.85537 -34.29528 -33.17509 -32.19123 -30.04314 -28.42983 -28.14976 -27.27898 -24.74188 -23.24647 -21.36478 -19.61782 -19.21239 -18.45017 -18.24742 -17.66495 -17.29808 -17.14424 -16.58511 -16.26697 -15.88770 -15.73799 -15.51127 -14.66227 -14.41196 -14.28171 -13.97397 -13.77457 -13.73845 -13.50619 -13.02712 -12.77585 -12.60784 -12.39308 -12.33575 -11.91811 -11.43818 -11.40310 -11.19342 -10.70578 -10.11902 -9.84776 -9.40789 -8.61300 -6.24250 -0.29185 -0.21443 0.37783 1.10477 1.24679 1.39255 1.68033 1.99463 2.09455 2.13309 2.54508 2.80971 3.00796 3.45356 3.72648 3.84714 3.92193 4.12811 4.29548 4.36584 4.43599 4.44255 4.60302 4.61873 4.74009 4.80067 4.91446 5.29440 5.42060 5.92641 6.19194 6.41023 6.77548 7.12698 7.67262 8.55452 Molecular weight = 331.00amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.005992 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.783588 B = 4671.762976 C = 6128.518827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.332 6.332 3 C 0.196 3.804 4 C -0.191 4.191 5 C 0.006 3.994 6 C -0.175 4.175 7 Br -0.018 7.018 8 C 0.166 3.834 9 F -0.133 7.133 10 C -0.202 4.202 11 C 0.511 3.489 12 O -0.611 6.611 13 N -0.462 5.462 14 C 0.066 3.934 15 C -0.341 4.341 16 H 0.049 0.951 17 C 0.022 3.978 18 N -0.898 5.898 19 Si 0.940 3.060 20 H -0.232 1.232 21 H -0.279 1.279 22 H -0.268 1.268 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.198 0.802 27 H 0.195 0.805 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.593 20.732 0.887 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.245 6.245 3 C 0.147 3.853 4 C -0.210 4.210 5 C -0.013 4.013 6 C -0.255 4.255 7 Br 0.067 6.933 8 C 0.144 3.856 9 F -0.111 7.111 10 C -0.208 4.208 11 C 0.300 3.700 12 O -0.496 6.496 13 N -0.182 5.182 14 C -0.076 4.076 15 C -0.468 4.468 16 H 0.067 0.933 17 C -0.182 4.182 18 N -0.534 5.534 19 Si 0.762 3.238 20 H -0.156 1.156 21 H -0.205 1.205 22 H -0.193 1.193 23 H 0.102 0.898 24 H 0.108 0.892 25 H 0.129 0.871 26 H 0.215 0.785 27 H 0.212 0.788 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.864 20.734 0.525 26.112 hybrid contribution 1.014 -0.695 0.060 1.231 sum -14.849 20.038 0.586 24.948 Atomic orbital electron populations 1.23639 0.74427 1.06195 1.04032 1.86200 1.25272 1.26394 1.86618 1.18941 0.88863 0.86708 0.90796 1.21684 1.02676 0.89050 1.07558 1.21371 0.89833 1.00006 0.90086 1.21788 0.96625 0.90015 1.17087 1.96715 1.81045 1.17641 1.97946 1.17249 0.76926 0.92023 0.99379 1.91545 1.29600 1.96806 1.93183 1.19188 0.93590 0.92376 1.15611 1.18245 0.83119 0.84553 0.84064 1.90615 1.60259 1.65708 1.33048 1.43647 1.46492 1.23257 1.04811 1.22107 1.01430 0.97897 0.86128 1.18662 1.16984 0.94379 1.16809 0.93268 1.26078 0.95316 0.99498 0.97322 1.69818 1.29092 1.22823 1.31711 0.85974 0.78376 0.79565 0.79847 1.15635 1.20548 1.19287 0.89757 0.89168 0.87141 0.78536 0.78783 0.90388 0.91759 0.90834 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -10.32 9.95 -89.95 -0.89 -11.22 16 3 C 0.20 5.89 6.70 22.85 0.15 6.04 16 4 C -0.19 -3.36 9.03 22.34 0.20 -3.15 16 5 C 0.01 0.10 9.76 22.31 0.22 0.32 16 6 C -0.17 -4.51 6.22 22.32 0.14 -4.37 16 7 Br -0.02 -0.42 33.26 -20.37 -0.68 -1.10 16 8 C 0.17 6.04 6.84 22.69 0.16 6.19 16 9 F -0.13 -5.63 16.28 44.97 0.73 -4.90 16 10 C -0.20 -8.12 3.99 -19.98 -0.08 -8.20 16 11 C 0.51 27.43 6.24 86.62 0.54 27.97 16 12 O -0.61 -38.85 16.97 -4.16 -0.07 -38.92 16 13 N -0.46 -24.93 2.58 -662.78 -1.71 -26.64 16 14 C 0.07 2.79 8.79 127.77 1.12 3.92 16 15 C -0.34 -21.36 9.37 84.08 0.79 -20.57 16 16 H 0.05 3.56 7.90 -2.91 -0.02 3.54 16 17 C 0.02 1.27 5.29 84.95 0.45 1.72 16 18 N -0.90 -54.50 13.96 21.67 0.30 -54.19 16 19 Si 0.94 44.13 24.96 68.60 1.71 45.84 16 20 H -0.23 -9.32 6.69 99.48 0.67 -8.66 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 23 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 24 H 0.09 0.85 7.66 -2.38 -0.02 0.83 16 25 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.20 1.46 6.29 -2.91 -0.02 1.44 16 27 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 28 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 29 H 0.06 2.73 3.42 -2.39 -0.01 2.72 16 30 H 0.07 2.71 6.75 -2.39 -0.02 2.69 16 31 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -85.53 293.24 5.34 -80.19 By element: Atomic # 1 Polarization: -1.35 SS G_CDS: 1.15 Total: -0.20 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 4.80 Total: 11.14 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -1.41 Total: -80.83 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.97 Total: -50.14 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.73 Total: -4.90 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.71 Total: 45.84 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -0.68 Total: -1.10 kcal Total: -85.53 5.34 -80.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197021125.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.229 kcal (2) G-P(sol) polarization free energy of solvation -85.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds