Wall clock time and date at job start Tue Mar 31 2020 16:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86795 * 120.00175 * 2 1 4 4 H 1.48502 * 109.47211 * 269.99689 * 3 2 1 5 5 H 1.48503 * 109.47216 * 29.99427 * 3 2 1 6 6 H 1.48503 * 109.47502 * 149.99709 * 3 2 1 7 7 C 1.38804 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99647 * 0.02562 * 7 2 1 9 9 S 1.76194 * 119.99976 * 180.02562 * 7 2 1 10 10 C 1.81007 * 99.99951 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47245 * 179.97438 * 10 9 7 12 12 O 1.21295 * 119.99928 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00147 * 180.27716 * 11 10 9 14 14 C 1.40133 * 120.00068 * 175.24641 * 13 11 10 15 15 C 1.38621 * 120.01190 * 34.70164 * 14 13 11 16 16 C 1.38569 * 120.31923 * 179.97438 * 15 14 13 17 17 Cl 1.73595 * 119.82535 * 179.97438 * 16 15 14 18 18 C 1.37901 * 120.34523 * 359.97438 * 16 15 14 19 19 C 1.39827 * 120.01255 * 359.97438 * 18 16 15 20 20 C 1.47415 * 120.15758 * 180.02562 * 19 18 16 21 21 O 1.21503 * 120.00035 * 179.97438 * 20 19 18 22 22 O 1.34750 * 120.00009 * 0.02562 * 20 19 18 23 23 C 1.39279 * 120.01056 * 214.42734 * 14 13 11 24 24 O 1.35726 * 120.16769 * 0.02562 * 23 14 13 25 25 H 0.96999 * 120.00039 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46501 * 60.00098 * 10 9 7 27 27 H 1.09002 * 109.47447 * 300.00354 * 10 9 7 28 28 H 0.96995 * 119.99853 * 355.24284 * 13 11 10 29 29 H 1.07996 * 119.84027 * 359.97438 * 15 14 13 30 30 H 1.07993 * 119.99139 * 179.97438 * 18 16 15 31 31 H 0.96699 * 116.99955 * 179.97438 * 22 20 19 32 32 H 0.96695 * 114.00068 * 90.00194 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5730 -3.2326 0.0026 12 8 6.3441 -2.2963 0.0024 13 7 6.0457 -4.4948 -0.0021 14 6 7.4241 -4.7264 -0.1026 15 6 8.3194 -3.8510 0.4920 16 6 9.6837 -4.0742 0.3971 17 17 10.7935 -2.9692 1.1460 18 6 10.1644 -5.1695 -0.2892 19 6 9.2739 -6.0623 -0.8934 20 6 9.7842 -7.2345 -1.6273 21 8 9.0078 -8.0087 -2.1509 22 8 11.1116 -7.4479 -1.7166 23 6 7.8947 -5.8395 -0.7950 24 8 7.0214 -6.7019 -1.3743 25 1 -0.4850 0.8400 -0.0004 26 1 3.6440 -3.4321 -0.8874 27 1 3.6433 -3.4311 0.8926 28 1 5.4317 -5.2428 0.0641 29 1 7.9519 -2.9908 1.0318 30 1 11.2288 -5.3377 -0.3599 31 1 11.3985 -8.2300 -2.2078 32 1 6.7941 -6.4776 -2.2870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:18 Heat of formation + Delta-G solvation = -142.970094 kcal Electronic energy + Delta-G solvation = -22495.849027 eV Core-core repulsion = 18574.179683 eV Total energy + Delta-G solvation = -3921.669344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 331.016 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.32223 -40.23922 -38.86833 -37.58160 -36.45327 -36.20531 -34.88220 -32.52104 -31.50693 -30.25376 -28.58091 -25.70880 -25.33556 -23.13018 -22.18931 -20.60446 -19.11322 -18.69340 -18.00796 -17.85034 -16.93147 -16.43890 -16.31776 -15.98517 -15.81135 -15.32757 -15.07756 -14.93427 -14.15676 -13.91516 -13.69075 -13.59048 -13.09924 -12.87788 -12.83198 -12.52235 -11.98217 -11.73246 -11.58441 -11.35909 -11.32050 -11.08122 -10.88853 -10.75457 -10.59321 -9.96073 -9.81808 -9.18815 -9.08419 -8.64126 -8.52229 -7.04105 -6.36659 -4.10521 0.11401 0.55682 1.71477 2.05137 2.34727 2.58449 2.63583 3.06693 3.08573 3.26897 3.43042 3.47972 3.64268 4.24789 4.37188 4.51186 4.55718 4.69997 4.78526 4.97238 5.02290 5.21644 5.38860 5.54522 5.59023 5.67973 5.80389 5.88226 6.05217 6.32166 7.12526 7.17141 7.49179 7.86074 8.02365 8.33909 9.08773 10.72440 Molecular weight = 331.02amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.002894 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.721880 B = 9674.169100 C =10976.158223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.524 4.524 8 H 0.090 0.910 9 S -0.136 6.136 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.496 6.496 13 N -0.671 5.671 14 C 0.136 3.864 15 C -0.066 4.066 16 C -0.039 4.039 17 Cl -0.051 7.051 18 C -0.058 4.058 19 C -0.132 4.132 20 C 0.531 3.469 21 O -0.494 6.494 22 O -0.513 6.513 23 C 0.151 3.849 24 O -0.471 6.471 25 H 0.272 0.728 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.420 0.580 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.416 0.584 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.718 -14.252 -1.420 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.672 4.672 8 H 0.108 0.892 9 S 0.090 5.910 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.368 6.368 13 N -0.318 5.318 14 C 0.039 3.961 15 C -0.087 4.087 16 C -0.066 4.066 17 Cl -0.022 7.022 18 C -0.078 4.078 19 C -0.134 4.134 20 C 0.375 3.625 21 O -0.382 6.382 22 O -0.325 6.325 23 C 0.102 3.898 24 O -0.283 6.283 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.258 0.742 29 H 0.184 0.816 30 H 0.171 0.829 31 H 0.275 0.725 32 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 22.487 -12.608 -0.765 25.792 hybrid contribution -0.909 -0.896 -0.736 1.474 sum 21.578 -13.504 -1.501 25.500 Atomic orbital electron populations 1.69932 1.05916 1.27896 1.47636 1.24712 0.94462 0.98986 0.93090 0.86746 0.81865 0.83309 0.79977 1.19160 1.19832 1.15916 1.22279 0.87964 0.97643 1.59272 0.89220 1.84825 1.09729 0.98937 1.97481 1.23287 0.92357 1.05338 1.06524 1.20647 0.91369 0.81448 0.74543 1.90714 1.58361 1.41917 1.45837 1.43561 1.04548 1.09834 1.73901 1.17720 0.84935 0.94518 0.98937 1.21501 0.90306 1.00354 0.96559 1.20573 0.90822 0.93999 1.01232 1.98398 1.61465 1.61789 1.80543 1.21191 1.00841 0.91329 0.94446 1.18994 0.92287 0.96635 1.05531 1.20367 0.80186 0.84384 0.77607 1.90947 1.57510 1.45682 1.44066 1.84550 1.25005 1.50880 1.72062 1.18115 0.87037 0.89593 0.95088 1.84751 1.61861 1.49365 1.32299 0.91817 0.87807 0.87745 0.74223 0.81648 0.82925 0.72485 0.74120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.82 13.97 55.49 0.78 -25.04 16 2 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 3 Si 0.86 21.05 27.74 -169.99 -4.71 16.34 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 7 C -0.52 -14.45 10.04 30.94 0.31 -14.14 16 8 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 9 S -0.14 -3.22 18.55 -107.50 -1.99 -5.21 16 10 C -0.12 -2.16 6.16 36.00 0.22 -1.93 16 11 C 0.53 8.28 7.69 -10.99 -0.08 8.20 16 12 O -0.50 -9.26 13.27 5.54 0.07 -9.18 16 13 N -0.67 -7.82 5.19 -9.77 -0.05 -7.87 16 14 C 0.14 1.58 6.32 -83.53 -0.53 1.05 16 15 C -0.07 -0.81 8.47 -39.32 -0.33 -1.14 16 16 C -0.04 -0.41 6.31 -39.58 -0.25 -0.66 16 17 Cl -0.05 -0.52 28.94 -51.86 -1.50 -2.02 16 18 C -0.06 -0.53 9.38 -39.11 -0.37 -0.90 16 19 C -0.13 -1.30 5.88 -104.89 -0.62 -1.92 16 20 C 0.53 5.04 8.26 34.47 0.28 5.32 16 21 O -0.49 -5.89 15.94 -26.60 -0.42 -6.31 16 22 O -0.51 -3.22 12.68 -40.63 -0.51 -3.74 16 23 C 0.15 1.59 6.74 -38.52 -0.26 1.33 16 24 O -0.47 -4.62 11.12 -40.80 -0.45 -5.07 16 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 27 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 28 H 0.42 3.84 8.56 -40.82 -0.35 3.49 16 29 H 0.17 2.31 6.18 -52.49 -0.32 1.99 16 30 H 0.15 1.11 7.61 -52.49 -0.40 0.71 16 31 H 0.42 0.77 9.11 45.56 0.42 1.18 16 32 H 0.40 2.67 9.06 45.56 0.41 3.08 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -34.45 322.24 -6.33 -40.79 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -0.67 Total: 4.63 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.72 Total: -2.16 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.72 Total: -32.91 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -1.32 Total: -24.30 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.34 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -1.99 Total: -5.21 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.45 -6.33 -40.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.184 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds