Wall clock time and date at job start Tue Mar 31 2020 16:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00242 * 2 1 4 4 H 1.48499 * 109.47372 * 240.00138 * 3 2 1 5 5 H 1.48502 * 109.47199 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47321 * 120.00298 * 3 2 1 7 7 C 1.38800 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00278 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00257 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47269 * 179.97438 * 10 9 7 12 12 O 1.20831 * 119.99779 * 0.02562 * 11 10 9 13 13 O 1.34229 * 119.99925 * 179.97438 * 11 10 9 14 14 C 1.45200 * 116.99826 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.46966 * 180.02562 * 14 13 11 16 16 O 1.21290 * 120.00249 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00190 * 180.02562 * 15 14 13 18 18 C 1.40024 * 120.00246 * 185.27481 * 17 15 14 19 19 C 1.38867 * 120.03385 * 213.27859 * 18 17 15 20 20 C 1.38127 * 119.99306 * 180.02562 * 19 18 17 21 21 C 1.38426 * 120.07470 * 0.02562 * 20 19 18 22 22 F 1.35099 * 119.96476 * 180.27300 * 21 20 19 23 23 C 1.38670 * 120.06883 * 0.02562 * 21 20 19 24 24 F 1.35097 * 120.00013 * 180.02562 * 23 21 20 25 25 C 1.38323 * 119.99730 * 359.97438 * 23 21 20 26 26 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46986 * 60.00060 * 10 9 7 28 28 H 1.08999 * 109.46873 * 299.99598 * 10 9 7 29 29 H 1.08998 * 109.47061 * 60.00386 * 14 13 11 30 30 H 1.08998 * 109.47419 * 300.00700 * 14 13 11 31 31 H 0.97005 * 119.99505 * 5.27855 * 17 15 14 32 32 H 1.07993 * 120.00004 * 0.02562 * 19 18 17 33 33 H 1.08003 * 119.96074 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.02824 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9872 -5.3028 0.0001 12 8 0.7954 -5.5015 0.0000 13 8 2.8405 -6.3390 -0.0003 14 6 2.2608 -7.6702 0.0009 15 6 3.3629 -8.6980 0.0009 16 8 4.5228 -8.3434 0.0004 17 7 3.0598 -10.0112 0.0014 18 6 4.0788 -10.9650 0.1128 19 6 3.9601 -12.1879 -0.5345 20 6 4.9657 -13.1283 -0.4235 21 6 6.0920 -12.8537 0.3329 22 9 7.0767 -13.7730 0.4354 23 6 6.2130 -11.6339 0.9813 24 9 7.3131 -11.3671 1.7188 25 6 5.2078 -10.6900 0.8722 26 1 -0.4850 0.8400 0.0004 27 1 3.1243 -3.7314 0.8894 28 1 3.1243 -3.7314 -0.8906 29 1 1.6438 -7.7986 -0.8884 30 1 1.6455 -7.7978 0.8915 31 1 2.1355 -10.2956 -0.0755 32 1 3.0817 -12.4034 -1.1245 33 1 4.8730 -14.0790 -0.9275 34 1 5.3013 -9.7400 1.3774 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046026468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:16 Heat of formation + Delta-G solvation = -197.044408 kcal Electronic energy + Delta-G solvation = -23769.084302 eV Core-core repulsion = 19429.106534 eV Total energy + Delta-G solvation = -4339.977768 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.052 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.55897 -49.63608 -42.02613 -41.30578 -39.43962 -37.53705 -35.92201 -34.61118 -32.13959 -31.86804 -30.89881 -28.84980 -27.67724 -24.78766 -23.88020 -22.61039 -21.92910 -19.97252 -19.66741 -18.89609 -18.85290 -18.46581 -18.06945 -17.72941 -17.39341 -17.14845 -16.89333 -16.69741 -16.35840 -16.06548 -16.01255 -15.60611 -15.21240 -15.06844 -14.74324 -14.57481 -14.28906 -13.83431 -13.79238 -13.57827 -13.40754 -13.18074 -12.88027 -12.68786 -12.56279 -11.95277 -11.82375 -11.72655 -11.53613 -11.19352 -11.14708 -10.40148 -10.12643 -9.32180 -8.72714 -8.37696 -6.16670 -0.29737 -0.09146 0.77752 1.05285 1.19720 1.35285 1.44613 1.49148 1.58232 2.11351 2.23942 2.31608 2.75089 2.97411 3.14913 3.26834 3.37865 3.55418 3.80215 3.86534 3.95453 4.00381 4.05459 4.17029 4.27837 4.45381 4.68339 4.79464 4.93300 4.94187 5.05227 5.14063 5.41457 5.67416 6.11341 6.17981 6.59393 6.82520 7.04507 8.71027 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.001821 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.493014 B =15376.007604 C =16111.166173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.018 3.982 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.084 0.916 9 S -0.126 6.126 10 C -0.113 4.113 11 C 0.497 3.503 12 O -0.508 6.508 13 O -0.343 6.343 14 C 0.042 3.958 15 C 0.523 3.477 16 O -0.538 6.538 17 N -0.647 5.647 18 C 0.165 3.835 19 C -0.100 4.100 20 C -0.089 4.089 21 C 0.037 3.963 22 F -0.139 7.139 23 C 0.064 3.936 24 F -0.143 7.143 25 C -0.151 4.151 26 H 0.273 0.727 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.442 0.558 32 H 0.192 0.808 33 H 0.187 0.813 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.021 -29.233 -1.551 29.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.700 4.700 8 H 0.102 0.898 9 S 0.101 5.899 10 C -0.261 4.261 11 C 0.339 3.661 12 O -0.395 6.395 13 O -0.259 6.259 14 C -0.034 4.034 15 C 0.310 3.690 16 O -0.413 6.413 17 N -0.296 5.296 18 C 0.070 3.930 19 C -0.120 4.120 20 C -0.108 4.108 21 C 0.016 3.984 22 F -0.118 7.118 23 C 0.043 3.957 24 F -0.122 7.122 25 C -0.172 4.172 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.283 0.717 32 H 0.209 0.791 33 H 0.204 0.796 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.228 -29.124 -1.505 29.628 hybrid contribution 1.797 1.175 0.429 2.189 sum 7.025 -27.949 -1.076 28.839 Atomic orbital electron populations 1.70133 1.07769 1.28871 1.47566 1.26063 0.95991 1.03118 0.93553 0.85026 0.77853 0.75822 0.79464 1.18774 1.20229 1.18835 1.23168 0.95514 0.91799 1.59470 0.89812 1.85376 1.08637 0.98682 1.97170 1.23109 1.04556 0.90191 1.08245 1.22865 0.84627 0.86887 0.71751 1.90675 1.17581 1.85776 1.45505 1.86536 1.40076 1.14907 1.84385 1.22929 0.94058 0.78216 1.08242 1.20454 0.89749 0.83538 0.75247 1.90812 1.22228 1.80806 1.47431 1.43087 1.11078 1.03181 1.72286 1.17528 0.89227 0.90505 0.95711 1.21278 1.01447 0.90630 0.98673 1.21298 0.90017 1.02456 0.97029 1.17978 0.89915 0.86486 1.04032 1.91506 1.60681 1.64582 1.95017 1.17703 0.85891 0.94759 0.97324 1.91495 1.51435 1.94275 1.74978 1.20979 0.94470 0.99950 1.01781 0.91792 0.86267 0.86185 0.84875 0.85127 0.71659 0.79090 0.79569 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.69 13.22 21.65 0.29 -53.40 16 2 C 0.02 1.01 5.49 84.86 0.47 1.47 16 3 Si 1.00 42.65 29.55 68.60 2.03 44.68 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.55 -30.57 9.50 67.95 0.65 -29.93 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.13 -6.58 20.57 -56.49 -1.16 -7.74 16 10 C -0.11 -4.39 6.27 71.24 0.45 -3.94 16 11 C 0.50 17.25 7.98 71.24 0.57 17.82 16 12 O -0.51 -19.66 15.61 21.95 0.34 -19.32 16 13 O -0.34 -9.87 9.75 -45.06 -0.44 -10.31 16 14 C 0.04 0.76 5.95 71.23 0.42 1.18 16 15 C 0.52 9.55 7.65 87.66 0.67 10.22 16 16 O -0.54 -15.32 14.19 15.74 0.22 -15.10 16 17 N -0.65 -6.10 5.34 -303.47 -1.62 -7.72 16 18 C 0.17 2.04 6.28 38.12 0.24 2.28 16 19 C -0.10 -0.55 9.96 22.39 0.22 -0.33 16 20 C -0.09 -0.68 10.02 22.29 0.22 -0.45 16 21 C 0.04 0.59 7.30 22.42 0.16 0.75 16 22 F -0.14 -2.62 17.18 44.97 0.77 -1.85 16 23 C 0.06 1.32 7.30 22.39 0.16 1.48 16 24 F -0.14 -3.60 17.18 44.97 0.77 -2.82 16 25 C -0.15 -2.94 8.63 22.43 0.19 -2.75 16 26 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.12 4.32 8.14 -2.40 -0.02 4.30 16 28 H 0.12 4.33 8.14 -2.40 -0.02 4.31 16 29 H 0.13 1.73 8.13 -2.39 -0.02 1.72 16 30 H 0.13 1.80 8.13 -2.39 -0.02 1.78 16 31 H 0.44 0.08 8.82 -92.70 -0.82 -0.73 16 32 H 0.19 -0.61 8.06 -2.91 -0.02 -0.63 16 33 H 0.19 0.16 8.06 -2.91 -0.02 0.13 16 34 H 0.14 3.25 6.42 -2.91 -0.02 3.23 16 Total: -1.00 -80.05 336.27 5.99 -74.06 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 0.37 Total: 1.72 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 4.43 Total: -2.19 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -1.34 Total: -61.12 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: 0.13 Total: -44.73 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 1.55 Total: -4.67 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -6.58 SS G_CDS: -1.16 Total: -7.74 kcal Total: -80.05 5.99 -74.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046026468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.989 kcal (2) G-P(sol) polarization free energy of solvation -80.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds